View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_20 (Length: 425)
Name: NF17758_low_20
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 32835897 - 32836294
Alignment:
| Q |
18 |
attaaagatgtgtttactttctacatggttattgtctgtgcatgatcactatagagaatgctttctacggaggaaattgcatttgatttcattgttgatg |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32835897 |
attacagatgtgtttactttctacatggttattgtctgtgcatgatcactatagagaatgctttctacggaggaaattgcatttgatttcattgttgatg |
32835996 |
T |
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| Q |
118 |
tatatccctgatttgtatgtttatgtgcaacattattaattttgtgtgctgattgctgtttcaggtttggtataatcgtcgcaggacatgatcactattg |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32835997 |
tatatccctgatttgtatgtttctgtgcaacattattaattttgtgtgctgattgttgtttcaggtttggtataatcgtcgtaggacatgatcactattg |
32836096 |
T |
|
| Q |
218 |
gcattggtttagcaatttaaagcacatgttacacacgagaagctaaaccaaattcacaagttgtggcaaattttttgaccttatttcattgaggccatta |
317 |
Q |
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| T |
32836097 |
gcattggtttagcaatttaaagcacatgttacacacgagaagttaaaccaaattcacaagttgtggcaaattttttgaccttatttcattgaggccatta |
32836196 |
T |
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| Q |
318 |
ccagacatagacattgtttcttttgttttctgtatgttgattccccccannnnnnnngttagcattaccgccacttcgacatggatatagttcctttg |
415 |
Q |
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| T |
32836197 |
ccagacatagacattgtttcttttgttttctgtatgttgattacccccattttttttgttagcattaccgccacttcgacatggatatagttcctttg |
32836294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 32842024 - 32842321
Alignment:
| Q |
19 |
ttaaagatgtgtttactttctacatggttattgtctgtgcatgatcactatagagaatgctttctacggaggaaattgcatttgatttcattgttgatgt |
118 |
Q |
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| T |
32842024 |
ttaatgatgtgtttactttctacatggttattgtctgtgcatgatcactatagagaatgctttctacggaggaaattgcatttgatttcattgttgatgt |
32842123 |
T |
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| Q |
119 |
atatccctgatttgtatgtttatgtgcaacattattaattttgtgtgctgattgctgtttcaggtttggtataatcgtcgcaggacatgatcactattgg |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32842124 |
atatccctgatttgtatgtttctgtgcaacattattaattatgtgtgctgattgttgtttcaggtttggtataatcgtcgtaggacatgatcactattgg |
32842223 |
T |
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| Q |
219 |
cattggtttagcaatttaaagcacatgttacacacgagaagctaaaccaaattcacaagttgtggcaaattttttgaccttatttcattgaggccatt |
316 |
Q |
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| T |
32842224 |
cattggtttagcaatttaaagcacatgttacacacgagaagctaaaccaaattcacaagttgtggcgaattttttgaccttatttcatcgaggtcatt |
32842321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 32842456 - 32842538
Alignment:
| Q |
333 |
gtttcttttgttttctgtatgttgattccccccannnnnnnngttagcattaccgccacttcgacatggatatagttcctttg |
415 |
Q |
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| T |
32842456 |
gtttcttttgttttctgtatgttgattacccccattttttttgttagcattaccaccacttcgacatggatatagttcctttg |
32842538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 32842344 - 32842398
Alignment:
| Q |
312 |
ccattaccagacatagacattgtttcttttgttttctgtatgttgattcccccca |
366 |
Q |
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| T |
32842344 |
ccattaccagacatagacatcatttcttttgttttctgtatgttgattaccccca |
32842398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 19374868 - 19374775
Alignment:
| Q |
220 |
attggtttagcaatttaaagcacatgttacacacgagaagctaaaccaaattcacaagttgtggcaaattttttgaccttatttcattgaggcca |
314 |
Q |
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| T |
19374868 |
attggtttagaaacttcaagcacatgtcacccataagaagctaaaccaaattcacaagctgtcgcgaa-tttttgatctcatttcattgaggcca |
19374775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 28402885 - 28402821
Alignment:
| Q |
93 |
attgcatttgatttcattgttgatgtatatccctgatttgtatgtttatgtgcaacattattaat |
157 |
Q |
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| T |
28402885 |
attgcatttaatttcatggttgatgtatgtcccttatttatatgtttctatgcaacattattaat |
28402821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 19940576 - 19940458
Alignment:
| Q |
128 |
atttgtatgtttatgtgcaacat--tattaattttgtgtgctgattgctgtttcaggtttggtataatcgtcgcaggacatgatcactattggcattggt |
225 |
Q |
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|||||||| ||| |||||||||| ||||||| |||| |||||| ||||||||| |||| || | |||| |||||||||| ||||||||||| ||| |
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| T |
19940576 |
atttgtatatttttgtgcaacatattattaataaagtgttatgattgttgtttcaggcatggtctattagtcgtaggacatgatgactattggcatcggt |
19940477 |
T |
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| Q |
226 |
ttagcaatttaaagcacat |
244 |
Q |
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| T |
19940476 |
ttagcggtttcaagcacat |
19940458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 19940453 - 19940408
Alignment:
| Q |
266 |
caaattcacaagttgtggcaaattttttgaccttatttcattgagg |
311 |
Q |
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| T |
19940453 |
caaatttacaagttccggcgaattttttgaccttatttcattgagg |
19940408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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