View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_23 (Length: 398)
Name: NF17758_low_23
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 26 - 386
Target Start/End: Original strand, 9574618 - 9574980
Alignment:
| Q |
26 |
aataatacttttcaaaaagacatgtgttgtgtttttgggttatgtataaacaagcacacttcttgaacttcagaagagatatttgatcttgtaaatgtca |
125 |
Q |
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| T |
9574618 |
aataatacttttcataaagacatgtgttgtgtttttggggtatgtataaacaagcacacttcttgaacttcataagagatatttgatcttgtaaatgtca |
9574717 |
T |
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| Q |
126 |
ggtattgcaaagatcaagcgaggttatgatattatgttggatcttcataggagtttcttgaagaaccactgagttttgcctttgtattcacatgtgtggg |
225 |
Q |
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| T |
9574718 |
ggtactacaatgctcaagcgaggctatgatattatgttggatcttcataggggtttcatgaagaaccactgagttttgcctttgtattcacatgtatggg |
9574817 |
T |
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| Q |
226 |
tgatgacttgccagcagacatacatgtgtgctcaataacttcctctgcatatttattttgagaaagaaaaataactggacggg--tgatgacttcacgaa |
323 |
Q |
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| T |
9574818 |
tgatgacttgccagtagacatacatgtgtgctcaataacttcctctgcatatttattttgagaaagaaaaataactggacgggcctcaatccttcatgga |
9574917 |
T |
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| Q |
324 |
aaattcaaagttaagcttagacataatcaattcataaagagagtcagaagaagcggcaagaat |
386 |
Q |
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| T |
9574918 |
aaattcaaagttaagcttagacataatcaattcataaagatagtcagaagaagcggcaagaat |
9574980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 25745419 - 25745339
Alignment:
| Q |
43 |
agacatgtgttgtgtttttgggttatgtataaacaagcacacttcttgaacttcagaagagatatttgatcttgtaaatgt |
123 |
Q |
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| T |
25745419 |
agacatatgttatgtttttggatcatgcataaacaagcatacatgttgaactacataagagatatctggtcttgtaaatgt |
25745339 |
T |
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