View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_24 (Length: 376)
Name: NF17758_low_24
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 39076426 - 39076051
Alignment:
| Q |
1 |
caggggcaggagctgaaagttaagaattaacaacacagaatatcataagcagactaatatcattaactgatatgataaacttctgaaaacaacacaaaag |
100 |
Q |
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| T |
39076426 |
caggggcaggagatgatagttaagaattaacaacacagaatatcataagcagactaatatcattaactgatatgataaacttctgaaaacaacacaaaag |
39076327 |
T |
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| Q |
101 |
aaagagcatgatgaatgatctaagataatctacatcacaaattttaaccacagtttgcatccatagagagataatatagcttttcaaatggtttcttgta |
200 |
Q |
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| T |
39076326 |
aaagagcatgatgaatgatctaagataatctacatcacaaattttaaccacagtttgcatccatagagagataatatagcttttcaaatggtttcttgta |
39076227 |
T |
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| Q |
201 |
atccatccgtattgctcccactattgtcccaaagttaacaaaagagagtaagatagggatgttatttaccccaacaataatctaaaactaaaattaaatc |
300 |
Q |
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| T |
39076226 |
atccatccgtattgctcccactattgtcccaaagttaacaaaagagagtaagatagggatgttatttaccccaacaataatctaaaactaaaattaaatc |
39076127 |
T |
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| Q |
301 |
ccgcgcattcttatctgaacatacttatagcatccatcaaagaatatagaaccgttcaaacttcatcttcagaagt |
376 |
Q |
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| T |
39076126 |
ccgtgcattcttatctgaacacacttatagcatccataaaagaatatagaacagttcaaacttcatcttcagaagt |
39076051 |
T |
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