View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17758_low_29 (Length: 348)

Name: NF17758_low_29
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17758_low_29
NF17758_low_29
[»] chr4 (4 HSPs)
chr4 (22-194)||(4106632-4106804)
chr4 (128-249)||(36907649-36907770)
chr4 (67-118)||(36907870-36907921)
chr4 (18-62)||(36908034-36908078)
[»] chr2 (2 HSPs)
chr2 (115-319)||(15764523-15764734)
chr2 (47-118)||(15764376-15764447)
[»] chr5 (2 HSPs)
chr5 (188-311)||(14278206-14278329)
chr5 (291-319)||(14278445-14278473)
[»] chr1 (6 HSPs)
chr1 (115-249)||(23076432-23076566)
chr1 (115-249)||(22770640-22770774)
chr1 (67-118)||(22770857-22770908)
chr1 (67-118)||(23076649-23076700)
chr1 (18-62)||(22771021-22771065)
chr1 (18-62)||(23076813-23076857)
[»] chr6 (2 HSPs)
chr6 (270-319)||(18749500-18749548)
chr6 (270-326)||(18749439-18749494)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 4106804 - 4106632
Alignment:
Q  22 tttgcttagaaaatgggggatgaggaggaacctccaattcttgttcccttcattttctggaactttctcttctctctttgctcacctcttccacactaat 121  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4106804 tttgcttaaaaaatgggggatgaggaggaacctccaattcttgttctcttcattttctggaactttctcttctctctttgctcacctcttccacactaat 4106705  T
Q  122 tttcctttcttctattttgtaatttatgtgcttaacttaattttgtagttgaaaacttgaaatggatgaaaag 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4106704 tttcctttcttctattttgtaatttatgtgcttaacttaattttgtagttgaaaacttgaaatggatgaaaag 4106632  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 36907770 - 36907649
Alignment:
Q  128 ttcttctattttgtaatttatgtgcttaacttaattttgtagttgaaaacttgaaatggatgaaaagggtcattgtaaagttgttgtttttaatattata 227  Q
    ||||||| |||| ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  36907770 ttcttcttttttctaatttatgtgcttaacttgattctgtagttgaaaaattgaaatgggtgaaaagggtcattgtaaagtttctgtttttaatattata 36907671  T
Q  228 acaaaaatttacatatttgtta 249  Q
    | | ||||||||||||||||||    
T  36907670 aaagaaatttacatatttgtta 36907649  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 36907921 - 36907870
Alignment:
Q  67 cccttcattttctggaactttctcttctctctttgctcacctcttccacact 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36907921 cccttcattttctggagctttctcttctctctttgctcacctcttccacact 36907870  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 36908078 - 36908034
Alignment:
Q  18 ggtgtttgcttagaaaatgggggatgaggaggaacctccaattct 62  Q
    ||||||||||| ||||||||||||||| || |||| |||||||||    
T  36908078 ggtgtttgcttggaaaatgggggatgaagaagaacatccaattct 36908034  T

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Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 115 - 319
Target Start/End: Original strand, 15764523 - 15764734
Alignment:
Q  115 cactaattttcctttcttctattttgtaatttatgtgcttaacttaattttgtagttgaaaacttgaaatggatgaaaagggtcattgtaaagttgttgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||   ||    
T  15764523 cactaattttcctttcttctattttgtaatttatgtgcttaacttgattttgtagttgaaaacttgaaatgagtgaaaagggtcattgtaaagtttcagt 15764622  T
Q  215 ttttaatattataacaaaaatttacatatttgttac-------aacttgattttgatattagagattttgttgtgtaatgggttgatgaatttttgttga 307  Q
    |||||||||||||||| ||||||  |||||| ||||       ||||| |||||||| ||||||||||| |||||| |||||||||||||||||||||||    
T  15764623 ttttaatattataacataaatttcaatattttttactacgtataacttaattttgatgttagagattttcttgtgttatgggttgatgaatttttgttga 15764722  T
Q  308 ttagcttaggtg 319  Q
    ||| ||||||||    
T  15764723 ttaccttaggtg 15764734  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 15764376 - 15764447
Alignment:
Q  47 aggaacctccaattcttgttcccttcattttctggaactttctcttctctctttgctcacctcttccacact 118  Q
    |||| ||||| |||||| ||||||||||||||| || |||| ||||||||||||||||||||||||||||||    
T  15764376 aggagcctcccattctttttcccttcattttctagagctttatcttctctctttgctcacctcttccacact 15764447  T

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Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 188 - 311
Target Start/End: Complemental strand, 14278329 - 14278206
Alignment:
Q  188 tgaaaagggtcattgtaaagttgttgtttttaatattataacaaaaatttacatatttgttacaacttgattttgatattagagattttgttgtgtaatg 287  Q
    ||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||| ||     
T  14278329 tgaaaagggtcattgtaaagtttctgtttataatattataacagaaatttacatatttgttataaattgattttgatgttagagattttgttgtgttatt 14278230  T
Q  288 ggttgatgaatttttgttgattag 311  Q
    ||||||||||||||||||||||||    
T  14278229 ggttgatgaatttttgttgattag 14278206  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Original strand, 14278445 - 14278473
Alignment:
Q  291 tgatgaatttttgttgattagcttaggtg 319  Q
    |||||||||||||||||||||||||||||    
T  14278445 tgatgaatttttgttgattagcttaggtg 14278473  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 23076566 - 23076432
Alignment:
Q  115 cactaattttcctttcttctattttgtaatttatgtgcttaacttaattttgtagttgaaaacttgaaatggatgaaaagggtcattgtaaagttgttgt 214  Q
    ||||||||||  |||||||| |||| ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||||||||||||||||  |||    
T  23076566 cactaatttttttttcttcttttttctaatttatgtgcttaacttgattctgtagttgaaaaattgaaatgggtgaaaagggtcattgtaaagtttctgt 23076467  T
Q  215 ttttaatattataacaaaaatttacatatttgtta 249  Q
    |||||||||| ||||| ||||||||||||||||||    
T  23076466 ttttaatattttaacagaaatttacatatttgtta 23076432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 22770774 - 22770640
Alignment:
Q  115 cactaattttcctttcttctattttgtaatttatgtgcttaacttaattttgtagttgaaaacttgaaatggatgaaaagggtcattgtaaagttgttgt 214  Q
    ||||||||||  | |||||| |||| ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||||||||||||||||  |||    
T  22770774 cactaatttttttctcttcttttttctaatttatgtgcttaacttgattctgtagttgaaaaattgaaatgggtgaaaagggtcattgtaaagtttctgt 22770675  T
Q  215 ttttaatattataacaaaaatttacatatttgtta 249  Q
    |||||||||| ||||| ||||||||||||||||||    
T  22770674 ttttaatattgtaacagaaatttacatatttgtta 22770640  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 22770908 - 22770857
Alignment:
Q  67 cccttcattttctggaactttctcttctctctttgctcacctcttccacact 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22770908 cccttcattttctggagctttctcttctctctttgctcacctcttccacact 22770857  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 23076700 - 23076649
Alignment:
Q  67 cccttcattttctggaactttctcttctctctttgctcacctcttccacact 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23076700 cccttcattttctggagctttctcttctctctttgctcacctcttccacact 23076649  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 22771065 - 22771021
Alignment:
Q  18 ggtgtttgcttagaaaatgggggatgaggaggaacctccaattct 62  Q
    ||||||||||| ||||||||||||||| || |||| |||||||||    
T  22771065 ggtgtttgcttggaaaatgggggatgaagaagaacatccaattct 22771021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 23076857 - 23076813
Alignment:
Q  18 ggtgtttgcttagaaaatgggggatgaggaggaacctccaattct 62  Q
    ||||||||||| ||||||||||||||| || |||| |||||||||    
T  23076857 ggtgtttgcttggaaaatgggggatgaagaagaacatccaattct 23076813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 18749548 - 18749500
Alignment:
Q  270 agattttgttgtgtaatgggttgatgaatttttgttgattagcttaggtg 319  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||    
T  18749548 agattttgttgttta-tgggttgatgaatttttgttgattagcttaggtg 18749500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 18749494 - 18749439
Alignment:
Q  270 agattttgttgtgtaatgggttgatgaatttttgttgattagcttaggtgctgttat 326  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||| ||||||    
T  18749494 agattttgttgttta-tgggttgatgaatttttgttgattagtttaggtggtgttat 18749439  T

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