View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_3 (Length: 723)
Name: NF17758_low_3
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 661; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 18 - 723
Target Start/End: Original strand, 51273412 - 51274117
Alignment:
| Q |
18 |
aaagacatataaagaaacaattgttcaacaaaaatttgcacaatcaagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273412 |
aaagacatataaagaaacaattgttcaacaaaaatttgcacaaccaagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacat |
51273511 |
T |
|
| Q |
118 |
aacaatattctagcaatatatactaaaatcaacatggagaatttatcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51273512 |
aacaatattctagcaatatatactaaaatcaacatggagaatttatcagatgatttattgatagagatatggagtcgtgtttcgtacaagacagcagtga |
51273611 |
T |
|
| Q |
218 |
gttgcaaatcaatctcaaagcgtttcttagctttaatctcacagctccaattcattgaacgatcaattcttcatcaccatactttgctccaacaaatgaa |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273612 |
gttgcaaatccatctcaaagcgtttcttagctttaatctcacagctccaattcattgaacgatcaattcttcatcaccatactttgctccaacaaatgaa |
51273711 |
T |
|
| Q |
318 |
agaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatcttaatctttctactcctgaaaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51273712 |
agaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctcaatctttctactcctgaaaat |
51273811 |
T |
|
| Q |
418 |
caaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagnnnnnnncatgtcttatattcgagaattgtcggattttcaa |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51273812 |
caaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagaaaaaaacatgtcttatattcgagaattgtcggattttcaa |
51273911 |
T |
|
| Q |
518 |
atggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgcc |
617 |
Q |
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| T |
51273912 |
atggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgcc |
51274011 |
T |
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| Q |
618 |
gggaaccggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccat |
717 |
Q |
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| T |
51274012 |
gggaaccggtcacaataaacgtgaccgtgtactagaaggctttgtttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccat |
51274111 |
T |
|
| Q |
718 |
cacagg |
723 |
Q |
| |
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|||||| |
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| T |
51274112 |
cacagg |
51274117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 48403187 - 48403146
Alignment:
| Q |
332 |
agaaaaaatggcacttcaattttatctcaaagcgtaaacttc |
373 |
Q |
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| T |
48403187 |
agaaagaatggcacttcaattttatctcaaagtgtaaacttc |
48403146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 63 - 516
Target Start/End: Complemental strand, 5051910 - 5051458
Alignment:
| Q |
63 |
aagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggagaattta |
162 |
Q |
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||||||||||||| ||||||||||| ||||||||||| | ||||||| |||||||| |||| | ||||||||||||||| ||||||||||||||| ||| |
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| T |
5051910 |
aagtatcagaatcaattatccaatttaaatttggtaggtaatagctcgtgaacata-caatctattagcaatatatactacaatcaacatggagaactta |
5051812 |
T |
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| Q |
163 |
tcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtgagttgcaaatcaatctcaaagcgtttcttagctttaatctcacagc |
262 |
Q |
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||||||||| ||| ||| ||||||||||||||||| |||||||||||| |||||| |||||||| ||| ||||||| |||||||| |||||||||||| |
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| T |
5051811 |
tcagatgatatatggatggagatatggagtcgtgtc-catacaagacaggagtgagatgcaaatccatcgcaaagcgcttcttagcaataatctcacagc |
5051713 |
T |
|
| Q |
263 |
tccaattcattgaacgatcaattcttcatcacca---tactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctc |
359 |
Q |
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||||||||| |||||| || ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
5051712 |
tccaattcaatgaacggccagttcttcatcaccaatatactttggtccaacaaatgaaagaagaagaaaaccagaaaag-tagcacttcaattttatctc |
5051614 |
T |
|
| Q |
360 |
aaagcgtaaacttctcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaa |
459 |
Q |
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|||||||||||| ||| | | ||||||| | ||||| ||||||||||||||| ||| |||||||| | | ||||||| ||| |||||||||| |||||| |
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| T |
5051613 |
aaagcgtaaactcctcgtatggttctcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccctaaa |
5051514 |
T |
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| Q |
460 |
cttgacaatataacaagnnnnnnncatgtcttatattcgagaattgtcggattttca |
516 |
Q |
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|| |||||||||||||| ||| |||||||||||||||||| ||||||||| |
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| T |
5051513 |
ctcgacaatataacaagataaaatcat-ccttatattcgagaattgttggattttca |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 572 - 723
Target Start/End: Complemental strand, 5051458 - 5051302
Alignment:
| Q |
572 |
acatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaa-taaacgtgaccgtgtactcgaaggccttgtttgtgaac |
670 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||||||||||||||| | ||||| |||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
671 |
ctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacagg |
723 |
Q |
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|||| ||||||||| | | || |||||| |||||||||||||||||||||||| |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacagg |
5051302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 374 - 671
Target Start/End: Original strand, 14907797 - 14908094
Alignment:
| Q |
374 |
tcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataac |
473 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||| |||||||| ||||||||||| |
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| T |
14907797 |
tcatttcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataac |
14907896 |
T |
|
| Q |
474 |
aagnnnnnnncatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaac |
573 |
Q |
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||| |||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
14907897 |
aagaaaataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaac |
14907996 |
T |
|
| Q |
574 |
atcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaacc |
671 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||| ||||| |||| ||| | ||||||||||||| |||||| ||||||| ||||| |
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| T |
14907997 |
atcctcacaaaagataggatcaaatttccactccctccaccgctacgaaccagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaacc |
14908094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 14907599 - 14907773
Alignment:
| Q |
128 |
tagcaatatatactaaaatcaacatggagaatttatcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtgagttgcaaatc |
227 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||| |||||| |
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| T |
14907599 |
tagcaatatatacttaaatcaacatggagaatttatcagatgatttattgatagagacatggattcgtgtttcatacaaaacatcagtgagttacaaatc |
14907698 |
T |
|
| Q |
228 |
aatctcaaagcgtttcttagcttt-aatctcacagctccaattcattgaacgatcaattcttcatcaccatactt |
301 |
Q |
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||||||||||| |||||||||| ||| ||| | ||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
14907699 |
catctcaaagcgcatcttagctttaaatttcaaatctccaattcattgaatgatccattattcatcaccatactt |
14907773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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