View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17758_low_32 (Length: 332)

Name: NF17758_low_32
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17758_low_32
NF17758_low_32
[»] chr3 (25 HSPs)
chr3 (196-319)||(54101613-54101736)
chr3 (82-152)||(54101781-54101851)
chr3 (1-68)||(4222188-4222255)
chr3 (1-61)||(53412992-53413052)
chr3 (1-68)||(15048023-15048090)
chr3 (1-55)||(14186694-14186748)
chr3 (3-69)||(34062509-34062575)
chr3 (1-69)||(2667909-2667977)
chr3 (1-69)||(10445100-10445168)
chr3 (1-69)||(30311353-30311421)
chr3 (1-65)||(32651403-32651467)
chr3 (1-69)||(44069805-44069873)
chr3 (1-69)||(51903839-51903907)
chr3 (14-69)||(478809-478864)
chr3 (1-68)||(36720428-36720495)
chr3 (15-69)||(10969878-10969932)
chr3 (1-39)||(36010789-36010827)
chr3 (4-69)||(11642170-11642235)
chr3 (1-69)||(8075088-8075156)
chr3 (1-69)||(8170719-8170787)
chr3 (1-69)||(14339657-14339725)
chr3 (1-61)||(28531027-28531087)
chr3 (1-61)||(30510168-30510228)
chr3 (1-69)||(49452920-49452987)
chr3 (1-69)||(52769944-52770012)
[»] chr1 (28 HSPs)
chr1 (3-68)||(10150831-10150896)
chr1 (1-68)||(33700735-33700802)
chr1 (1-69)||(6650642-6650710)
chr1 (1-39)||(9165186-9165224)
chr1 (1-69)||(2799909-2799977)
chr1 (1-69)||(21547441-21547509)
chr1 (5-69)||(29753700-29753764)
chr1 (1-66)||(8904461-8904526)
chr1 (1-69)||(4566595-4566662)
chr1 (1-69)||(6122841-6122909)
chr1 (1-69)||(8177143-8177211)
chr1 (1-65)||(15786286-15786349)
chr1 (1-69)||(40257446-40257514)
chr1 (1-49)||(51703826-51703874)
chr1 (1-68)||(3799953-3800020)
chr1 (1-68)||(44961812-44961879)
chr1 (1-68)||(52116743-52116810)
chr1 (3-69)||(16893443-16893509)
chr1 (1-67)||(23566302-23566368)
chr1 (1-42)||(1600280-1600321)
chr1 (1-38)||(3265971-3266008)
chr1 (1-69)||(21392884-21392952)
chr1 (15-68)||(28283592-28283645)
chr1 (4-69)||(40810517-40810582)
chr1 (1-69)||(10526870-10526938)
chr1 (1-69)||(12587317-12587384)
chr1 (1-61)||(43446010-43446070)
chr1 (1-61)||(51814541-51814601)
[»] chr8 (18 HSPs)
chr8 (1-61)||(23361618-23361678)
chr8 (1-69)||(6536567-6536635)
chr8 (1-56)||(35690038-35690093)
chr8 (1-69)||(33017261-33017328)
chr8 (7-66)||(42740547-42740606)
chr8 (4-69)||(8059682-8059747)
chr8 (4-69)||(27871718-27871783)
chr8 (1-69)||(11819823-11819891)
chr8 (1-65)||(19703452-19703516)
chr8 (1-69)||(30483845-30483913)
chr8 (1-69)||(40791856-40791924)
chr8 (18-69)||(7347901-7347952)
chr8 (1-68)||(14701379-14701446)
chr8 (1-68)||(26688912-26688979)
chr8 (1-68)||(40872923-40872990)
chr8 (15-69)||(16317671-16317725)
chr8 (1-42)||(3174793-3174834)
chr8 (1-69)||(44780075-44780143)
[»] chr4 (22 HSPs)
chr4 (1-69)||(7949415-7949483)
chr4 (3-69)||(2732043-2732109)
chr4 (1-69)||(7292759-7292827)
chr4 (1-69)||(23378003-23378071)
chr4 (1-69)||(37274420-37274488)
chr4 (1-68)||(33632098-33632165)
chr4 (3-69)||(27104989-27105055)
chr4 (15-69)||(47386752-47386806)
chr4 (1-69)||(4249224-4249292)
chr4 (1-69)||(9693459-9693527)
chr4 (1-69)||(16581740-16581808)
chr4 (1-69)||(32992659-32992727)
chr4 (1-61)||(37109320-37109380)
chr4 (1-69)||(38869815-38869883)
chr4 (1-68)||(32662801-32662868)
chr4 (1-68)||(46295144-46295211)
chr4 (5-68)||(51948531-51948594)
chr4 (1-31)||(43728442-43728472)
chr4 (3-68)||(18404845-18404910)
chr4 (1-69)||(7539637-7539704)
chr4 (1-69)||(8030165-8030233)
chr4 (1-53)||(13015474-13015526)
[»] chr7 (18 HSPs)
chr7 (1-56)||(2882997-2883052)
chr7 (1-61)||(9183160-9183220)
chr7 (1-69)||(21558175-21558243)
chr7 (1-61)||(15137600-15137660)
chr7 (1-69)||(26459371-26459439)
chr7 (5-69)||(30579386-30579450)
chr7 (1-69)||(41519226-41519293)
chr7 (2-65)||(21569997-21570060)
chr7 (2-69)||(39631892-39631959)
chr7 (7-61)||(33222423-33222477)
chr7 (3-68)||(279916-279981)
chr7 (1-66)||(38374563-38374628)
chr7 (15-68)||(41975948-41976001)
chr7 (1-69)||(7309403-7309470)
chr7 (1-61)||(11700212-11700271)
chr7 (1-61)||(42712005-42712065)
chr7 (1-69)||(43590954-43591022)
chr7 (8-68)||(48983695-48983755)
[»] scaffold0337 (1 HSPs)
scaffold0337 (1-69)||(1800-1868)
[»] chr6 (12 HSPs)
chr6 (1-69)||(24507497-24507565)
chr6 (1-68)||(24333987-24334054)
chr6 (3-69)||(2484769-2484835)
chr6 (4-68)||(3925794-3925858)
chr6 (1-69)||(11103396-11103464)
chr6 (1-69)||(13227119-13227187)
chr6 (1-69)||(20213088-20213156)
chr6 (1-69)||(22107111-22107179)
chr6 (1-68)||(15951264-15951331)
chr6 (1-69)||(11306135-11306203)
chr6 (9-69)||(24256783-24256843)
chr6 (1-69)||(28363984-28364052)
[»] chr5 (16 HSPs)
chr5 (1-69)||(25627104-25627171)
chr5 (1-68)||(37258328-37258395)
chr5 (1-69)||(16773854-16773922)
chr5 (1-69)||(17028225-17028293)
chr5 (1-69)||(17155869-17155937)
chr5 (1-69)||(21589335-21589403)
chr5 (1-68)||(29173537-29173604)
chr5 (1-68)||(30700580-30700647)
chr5 (1-39)||(14285208-14285246)
chr5 (1-34)||(29692382-29692415)
chr5 (1-42)||(43442243-43442284)
chr5 (1-61)||(16457857-16457917)
chr5 (28-68)||(17877122-17877162)
chr5 (1-61)||(18974007-18974067)
chr5 (5-69)||(30000167-30000231)
chr5 (4-68)||(31074282-31074346)
[»] chr2 (13 HSPs)
chr2 (1-65)||(11251134-11251198)
chr2 (1-69)||(4060175-4060243)
chr2 (1-61)||(19244156-19244216)
chr2 (1-69)||(29503318-29503385)
chr2 (1-69)||(35203344-35203412)
chr2 (1-68)||(9577883-9577950)
chr2 (1-39)||(33839251-33839289)
chr2 (1-67)||(37971942-37972008)
chr2 (1-69)||(1435111-1435178)
chr2 (1-69)||(21303955-21304023)
chr2 (1-69)||(23230566-23230634)
chr2 (1-69)||(34041549-34041617)
chr2 (1-68)||(42922461-42922529)
[»] scaffold0122 (1 HSPs)
scaffold0122 (1-69)||(6883-6948)
[»] scaffold0115 (1 HSPs)
scaffold0115 (4-69)||(42625-42690)
[»] scaffold0074 (1 HSPs)
scaffold0074 (15-68)||(45721-45774)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-61)||(41602-41662)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-49)||(94952-95000)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-40)||(19952-19991)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-68)||(49353-49420)
[»] scaffold0238 (1 HSPs)
scaffold0238 (1-39)||(2702-2740)
[»] scaffold0258 (1 HSPs)
scaffold0258 (1-69)||(15284-15352)
[»] scaffold0211 (1 HSPs)
scaffold0211 (1-69)||(24100-24168)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-69)||(25308-25376)
[»] scaffold0070 (1 HSPs)
scaffold0070 (1-49)||(42501-42549)
[»] scaffold0065 (1 HSPs)
scaffold0065 (1-69)||(12236-12304)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 196 - 319
Target Start/End: Complemental strand, 54101736 - 54101613
Alignment:
Q  196 aatggggagttctattgactatttttatgacatcctgattcctgccaaaactagaagggaaaaactttgaaaagtggcgaatttagatgaatgtgatatt 295  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54101736 aatggggagctctattgacaatttttatgacatcctgattcctgccaaaactagaagggaaaaactttcaaaagtggcgaatttagatgaatgtgatatt 54101637  T
Q  296 tgcttccaagaagtgttgaaagtg 319  Q
    ||||||||||||||||||||||||    
T  54101636 tgcttccaagaagtgttgaaagtg 54101613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 54101851 - 54101781
Alignment:
Q  82 taatcaatttttaagtttaccacaaaatacagtgaatcaatctccaataaactgatatcaaagtcattgct 152  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54101851 taatcaatttttaagtttaccacaaaatagagtgaatcaatctccaataaactgatatcaaagtcattgct 54101781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4222188 - 4222255
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    |||||||||||||||||| |||||| |||||||||||||||| |||| ||| | ||||||||||||||    
T  4222188 tgctcctcctcaaagtcttaggttcgattctctctggtgtcaatttaggtgagttagtttaacttctt 4222255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 53412992 - 53413052
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||| || ||| |||||||    
T  53412992 tgctcctcctcaaggtctcaggttcaattctctctggtgccaatttgagggggttagttta 53413052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 15048090 - 15048023
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||||| ||||||||||| ||| ||||||||| || ||| || ||| ||||||||||||||    
T  15048090 tgctcctcctcaaggtctcaggttcgattatctctggtgccaatttgagggggttagtttaacttctt 15048023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14186694 - 14186748
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggct 55  Q
    ||||||||||||| ||||||||||| |||||||| ||||||| |||| |||||||    
T  14186694 tgctcctcctcaaggtctcaggttcgattctctccggtgtcaatttaggtgggct 14186748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 34062575 - 34062509
Alignment:
Q  3 ctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||| ||||||||||||||||||||||||| || ||| ||   | |||||||||||||||    
T  34062575 ctcctcctcaaggtctcaggttcaattctctctggtgccaatttgaggatgttagtttaacttcttc 34062509  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2667909 - 2667977
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||| ||||| | ||||||||||| ||| ||||| |||||| |||| ||||||||||||| |||||||    
T  2667909 tgctcttcctcgaggtctcaggttcgattatctctagtgtcaatttaggtgggctagtttagcttcttc 2667977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10445168 - 10445100
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||| | ||||||||||| |||||||||||||  | ||| ||||||||| |||| |||||||    
T  10445168 tgctcctcctcgaggtctcaggttcgattctctctggtgctaatttgagtgggctaatttagcttcttc 10445100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30311353 - 30311421
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| ||||||| ||||| || ||| || ||| ||||||| |||||||    
T  30311353 tgctcctcctcaaggtctcaggttcgattctctttggtgccaatttgagggggttagtttagcttcttc 30311421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32651467 - 32651403
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaactt 65  Q
    |||||||||||||  |||||| ||| ||||||||| |||||| ||||  ||||||||||||||||    
T  32651467 tgctcctcctcaagatctcagattcgattctctctagtgtcaatttagatgggctagtttaactt 32651403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 44069805 - 44069873
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||  ||||| || |||| || |||| ||||||||||||| |||||||    
T  44069805 tgctcctcctcaaggtctcaggtttgattctttccggtgccaatttaggtgggctagtttagcttcttc 44069873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 51903907 - 51903839
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||||||||||   ||||||||||| |||||||| ||||||| ||| ||||||||| |||| |||||||    
T  51903907 tgctcctcctcgtggtctcaggttcgattctctccggtgtcaatttgagtgggctaatttagcttcttc 51903839  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 478864 - 478809
Alignment:
Q  14 agtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||| ||||||||| ||| ||||||| ||||||||||||| |||| |||||||    
T  478864 agtctcaagttcaattcactccggtgtcaatttaagtgggctaatttagcttcttc 478809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 36720428 - 36720495
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||| | || |||||||| ||||||||| |||||| |||| ||||||| ||||| ||||||    
T  36720428 tgctcctcctcgaggtttcaggttcgattctctctagtgtcaatttaggtgggctggtttagcttctt 36720495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 10969932 - 10969878
Alignment:
Q  15 gtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||| ||||||||||||| || |||||| ||| ||||||| |||||||    
T  10969932 gtctcaggttcgattctctctggtgccaatttaagggggttagtttagcttcttc 10969878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 36010789 - 36010827
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtg 39  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  36010789 tgctcctcctcaaagtctcaagttcgattctctctggtg 36010827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 11642235 - 11642170
Alignment:
Q  4 tcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||||||||| ||||||||||| ||| ||| | |||||| |||||| ||| ||||||| |||||||    
T  11642235 tcctcctcaaggtctcaggttcgattatctttagtgtcaatttaagagggttagtttagcttcttc 11642170  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8075156 - 8075088
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| || |||||||| |||| |||| |||||| |||  |||||||| |||| |||||||    
T  8075156 tgctcctcctcaaggtttcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttcttc 8075088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8170719 - 8170787
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||| ||||| ||||||||||| |||  ||||||||||| |||  |||||||| ||||| ||||||    
T  8170719 tgctcctactcaaggtctcaggttcgatttcctctggtgtcaatttgggtgggctaatttaaattcttc 8170787  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14339657 - 14339725
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| |||||| || ||| || || | |||||||| |||| |||||||    
T  14339657 tgctcctcctcaatgtctcaggttcgattctccctagtgccaattaaggtgggctaatttagcttcttc 14339725  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28531087 - 28531027
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||| | |||| ||| ||||||||||||||||||| |||  |||||||| ||||    
T  28531087 tgctcctcctcgaggtcttaggctcaattctctctggtgtcaatttgggtgggctaattta 28531027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30510228 - 30510168
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||| ||| | ||||||||||| ||||||||| |||||| | ||||||||||| ||||    
T  30510228 tgctccttctcgaggtctcaggttcgattctctctagtgtcaatctaagtgggctaattta 30510168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49452920 - 49452987
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||||| || |||| |||||| |||   ||||||| ||||||||||||    
T  49452920 tgctcctcctcaaggtctcaggttcaa-tccctctagtgtcaatttggatgggctaatttaacttcttc 49452987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 52770012 - 52769944
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||  | ||||||||||| ||||||| | |||||| |||| |||||||| |||| |||||||    
T  52770012 tgctcctccttgaggtctcaggttcgattctctttagtgtcaatttaggtgggctaatttagcttcttc 52769944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 10150896 - 10150831
Alignment:
Q  3 ctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||| ||||||    
T  10150896 ctcctcctcaaagtctcaggttcaattctctcaggtgtcagtttgagtggactaatttagcttctt 10150831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 33700802 - 33700735
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||||| ||||||||||| ||||||||||||| || |||||| ||| ||||||||||||||    
T  33700802 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttaagggggttagtttaacttctt 33700735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6650642 - 6650710
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| |||||||||||||||| |||| ||||  ||||||| |||||||    
T  6650642 tgctcctcctcaatgtctcaggttcgattctctctggtgtcaatttaggtggattagtttagcttcttc 6650710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9165224 - 9165186
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtg 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9165224 tgctcctcctcaaagtctcaggttcaattctctctggtg 9165186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2799909 - 2799977
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| ||||||||||||| || ||| || ||| ||||||| |||||||    
T  2799909 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagtttagcttcttc 2799977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21547509 - 21547441
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||| | || |||||||| |||||||||| || || |||| |||||||||||||||||||||    
T  21547509 tgctcctcctcgaggtttcaggttcgattctctctgatgccaatttaggtgggctagtttaacttcttc 21547441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 29753700 - 29753764
Alignment:
Q  5 cctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||| ||||||||||| ||||||||||||| || |||||| ||| ||||||| |||||||    
T  29753700 cctcctcaaggtctcaggttcgattctctctggtgccaatttaagagggttagtttagcttcttc 29753764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8904461 - 8904526
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttc 66  Q
    ||||||||||||| |||||| |||| ||||||||||||| || ||| || ||| ||||||||||||    
T  8904461 tgctcctcctcaaggtctcaagttcgattctctctggtgccaatttgagggggttagtttaacttc 8904526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 4566595 - 4566662
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||  ||||||||||| |||||||||| ||||| |||||| ||| ||||||| |||||||    
T  4566595 tgctcctcctcagggtctcaggttcgattctctctgatgtcaatttaag-gggttagtttagcttcttc 4566662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6122841 - 6122909
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| |||| |||| |||||| |||  |||||||| |||| |||||||    
T  6122841 tgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttcttc 6122909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8177211 - 8177143
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| || |||||||| ||||||||||||| || ||| || ||| ||||||| |||||||    
T  8177211 tgctcctcctcaaggtttcaggttcgattctctctggtgccaatttgagggggttagtttagcttcttc 8177143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15786349 - 15786286
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaactt 65  Q
    ||||||||||||| ||||||||||| ||||||| |||||||| ||| || ||| |||||||||||    
T  15786349 tgctcctcctcaaggtctcaggttcgattctctttggtgtcaatttgag-gggttagtttaactt 15786286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 40257446 - 40257514
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||| | |||||| |||||||||| || ||||||| |||  ||||||||||||| |||||||    
T  40257446 tgctcctcctcgaggtctcaagttcaattctatccggtgtcaatttgggtgggctagtttagcttcttc 40257514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51703826 - 51703874
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaag 49  Q
    |||||||||||||||| |||||||| |||||||||||| ||| ||||||    
T  51703826 tgctcctcctcaaagtttcaggttcgattctctctggtatcaatttaag 51703874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3799953 - 3800020
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||| |||| |||||||| ||||||||| ||| || |||| |||||||| |||| ||||||    
T  3799953 tgctcctcctcgaagtttcaggttcgattctctctagtgccaatttaggtgggctaatttagcttctt 3800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 44961812 - 44961879
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||||  ||||||||||| ||||||||| |||||| |||  |||||||| |||| ||||||    
T  44961812 tgctcctcctcagggtctcaggttcgattctctctagtgtcaatttgggtgggctaatttagcttctt 44961879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 52116810 - 52116743
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||||| |||||||||||||||||| || ||| || || | |||||||| |||| ||||||    
T  52116810 tgctcctcctcaatgtctcaggttcaattctccctagtgccaattaaggtgggctaatttagcttctt 52116743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 16893443 - 16893509
Alignment:
Q  3 ctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||| | ||||||||||| ||| |||| ||||||| ||| ||||||||| |||| |||||||    
T  16893443 ctcctcctcgaggtctcaggttcgattttctccggtgtcaatttgagtgggctaatttagcttcttc 16893509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 23566368 - 23566302
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttct 67  Q
    |||||||||| || || |||||||| ||||||||||||| ||||||| |||||| | |||| |||||    
T  23566368 tgctcctcctaaaggtttcaggttctattctctctggtggcagtttaggtgggcaaatttagcttct 23566302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1600321 - 1600280
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtca 42  Q
    |||||||||| ||||| |||||||| ||||||||||||||||    
T  1600321 tgctcctccttaaagtttcaggttcgattctctctggtgtca 1600280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3265971 - 3266008
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggt 38  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  3265971 tgctcctcctcaaggtctcaggttcgattctctctggt 3266008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 21392884 - 21392952
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattct-ctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| || || |||| ||| |||||| ||||||||| ||||||||||||    
T  21392884 tgctcctcctcaaggtctcaggttcgatcctcctct-gtgccagtttgagtgggctaatttaacttcttc 21392952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 28283592 - 28283645
Alignment:
Q  15 gtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||| |||||||||||||||| |||| || | ||| |||||||||||    
T  28283592 gtctcaggttcgattctctctggtgtcaatttatgtagtctaatttaacttctt 28283645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 40810517 - 40810582
Alignment:
Q  4 tcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||| |||| ||||||||||| ||||||||||||| || ||| || ||| ||||||| |||||||    
T  40810517 tcctcttcaaggtctcaggttcgattctctctggtgccaatttgagagggttagtttagcttcttc 40810582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10526870 - 10526938
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||| ||| ||||||||||| |||| |||  ||||| || |||| |||||||    
T  10526870 tgctcctcctcaaggtctcagattcgattctctctggagtcaatttgggtgggttaatttagcttcttc 10526938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12587317 - 12587384
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||| | ||||||||||| |||||||| |||| || |||| |||||||| |||| |||||||    
T  12587317 tgctcctcctcgaggtctcaggttcgattctctccggtg-caatttaggtgggctaatttagcttcttc 12587384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43446010 - 43446070
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||||| |||||| |||| |||||| | |||| || ||| ||||||||||||||    
T  43446010 tgctcctcctcaaggtctcatgttcgattctccccggtgccaatttgagtgggctagttta 43446070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 51814541 - 51814601
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||||| ||||||||||| |||||||| |||| || |||  |||||||| ||||    
T  51814541 tgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaattta 51814601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23361678 - 23361618
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| ||||    
T  23361678 tgctcctcctcaaggtctcaggttcaattctctctggtgtcaatttaggtgggctaattta 23361618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6536567 - 6536635
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||| ||||| || |||| |||||||    
T  6536567 tgctcctcctcaaggtctcaggttcaattctctctggtgccaatttaggtgggttaatttagcttcttc 6536635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 35690093 - 35690038
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggcta 56  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||||| |||||    
T  35690093 tgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaagtaggcta 35690038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33017261 - 33017328
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| ||||||||||||| || ||| || ||| |||||||||||||||    
T  33017261 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgag-gggttagtttaacttcttc 33017328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 42740547 - 42740606
Alignment:
Q  7 tcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttc 66  Q
    ||||||| |||||||||||||||||||||||||||| |||||| | | ||||||| ||||    
T  42740547 tcctcaaggtctcaggttcaattctctctggtgtcaatttaagggagttagtttagcttc 42740606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 8059682 - 8059747
Alignment:
Q  4 tcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||||||||| ||||||||||| |||||| ||| ||||| ||| |||| ||||||||| |||||||    
T  8059682 tcctcctcaaggtctcaggttccattctccctgatgtcaatttgagtgagctagtttagcttcttc 8059747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 27871718 - 27871783
Alignment:
Q  4 tcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||||||| |||| |||||||||  | ||| ||| |||| |||||||||||||||||    
T  27871718 tcctcctcaaagtctcaagttcgattctctctaatatcaatttgagtgagctagtttaacttcttc 27871783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11819823 - 11819891
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| |||| |||| |||||| |||  |||||||| |||| |||||||    
T  11819823 tgctcctcctcaaggtctcaggttcgattcactctagtgtcaatttgggtgggctaatttagcttcttc 11819891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19703516 - 19703452
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaactt 65  Q
    ||||||||||||| ||||||||||| |||||| || |||||| || | |||||||| ||||||||    
T  19703516 tgctcctcctcaaggtctcaggttcgattctccctagtgtcaattaaggtgggctaatttaactt 19703452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30483913 - 30483845
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||||||||||| |||||||||||||||||||||| ||| || ||| | ||| ||| |||| |||||||    
T  30483913 tgctcctcctcagagtctcaggttcaattctctcttgtgccaatttgaatggactaatttatcttcttc 30483845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40791924 - 40791856
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||  |||||| |||||| ||| ||||| |||||| ||||||||||||| |||| |||||||    
T  40791924 tgctcctccttgaagtcttaggttcgattttctctagtgtcaatttaagtgggctaatttagcttcttc 40791856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 7347901 - 7347952
Alignment:
Q  18 tcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||||||||||||||||| |||||| |||| |||||||| |||| |||||||    
T  7347901 tcaggttcaattctctcttgtgtcaatttaggtgggctaatttagcttcttc 7347952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 14701446 - 14701379
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||| ||||||||||||| ||||||||||| |||||||| |||   || |||| |||||||||||    
T  14701446 tgctccttctcaaagtctcagattcaattctctttggtgtcaatttggatgagctaatttaacttctt 14701379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 26688912 - 26688979
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||||| |||||||||||| ||||  || |||||| |||  ||||||||||||| ||||||    
T  26688912 tgctcctcctcaaggtctcaggttcagttcttcctagtgtcaatttgggtgggctagtttagcttctt 26688979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 40872923 - 40872990
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    |||||||| |||| || | |||||| |||||||| |||| || |||| ||||||||||||||||||||    
T  40872923 tgctcctcttcaaggttttaggttccattctctccggtgccaatttaggtgggctagtttaacttctt 40872990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 16317671 - 16317725
Alignment:
Q  15 gtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||||| |||| ||||||||||||| || ||| |||||||||||||| |||||||    
T  16317671 gtctcatgttcgattctctctggtgccaatttcagtgggctagtttagcttcttc 16317725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3174834 - 3174793
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtca 42  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||    
T  3174834 tgctcatcctcaaggtctcaggttcgattctctctggtgtca 3174793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 44780143 - 44780075
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||  |||| |||| |||||| |||  |||||||| |||| |||||||    
T  44780143 tgctcctcctcaaggtctcaggtttgattccctctagtgtcaatttgggtgggctaatttagcttcttc 44780075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7949483 - 7949415
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| |||||||||||||||| |||| |||||||| |||| |||||||    
T  7949483 tgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaatttagcttcttc 7949415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 2732043 - 2732109
Alignment:
Q  3 ctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||||||||||||| |||||||| |||| || |||  ||||||||||||| |||||||    
T  2732043 ctcctcctcaaagtctcaggttcgattctctccggtgccaatttgggtgggctagtttagcttcttc 2732109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7292827 - 7292759
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||||||||||||||| ||||||||| ||| || ||| || ||| ||||||| |||||||    
T  7292827 tgctcctcctcaaagtctcaggttcgattctctctagtgccaatttgagggggttagtttagcttcttc 7292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 23378003 - 23378071
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| ||||||||| ||| || ||| || ||||||||||| |||||||    
T  23378003 tgctcctcctcaaggtctcaggttcgattctctctagtgccaatttgagggggctagtttagcttcttc 23378071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37274488 - 37274420
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| |||| |||||| |||||||||||||  | ||||||||||||| |||| |||||||    
T  37274488 tgctcctcctcaaggtcttaggttcgattctctctggtgctaatttaagtgggctaatttagcttcttc 37274420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 33632165 - 33632098
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||||| ||| |||| || |||||||||||||||| ||| || ||| ||||||||||||||    
T  33632165 tgctcctcctcaaggtcccaggatcgattctctctggtgtcaatttgagggggttagtttaacttctt 33632098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 27105055 - 27104989
Alignment:
Q  3 ctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||| || ||||||| |||||| |||||||| ||||||| ||| ||||||||| ||||||||||||    
T  27105055 ctccttcttaaagtctgaggttcgattctctccggtgtcaatttgagtgggctaatttaacttcttc 27104989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 47386806 - 47386752
Alignment:
Q  15 gtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||||||||||| |||||| |||| |||||||| |||| |||||||    
T  47386806 gtctcaggttcaattctctctagtgtcaatttaggtgggctaatttagcttcttc 47386752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 4249224 - 4249292
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||  ||||||||||||| || ||| || ||| ||||||| |||||||    
T  4249224 tgctcctcctcaaggtctcaggtttgattctctctggtgccaatttgagggggttagtttagcttcttc 4249292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9693527 - 9693459
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| |||| |||| |||||| |||  |||||||| |||| |||||||    
T  9693527 tgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttaccttcttc 9693459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 16581740 - 16581808
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| ||| ||||||||| || ||| || ||| ||||||| |||||||    
T  16581740 tgctcctcctcaaggtctcaggttctattatctctggtgccaatttgagagggttagtttagcttcttc 16581808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32992659 - 32992727
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| |||||| |||| |||||| | ||||||| ||| ||||| |||||||| |||||||    
T  32992659 tgctcctcctcaaggtctcaagttcgattctccccggtgtcaatttgagtggactagtttagcttcttc 32992727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 37109380 - 37109320
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||||| ||||||||||| ||||||||||||| || ||| || ||| |||||||    
T  37109380 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagttta 37109320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38869815 - 38869883
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| |||| |||||||| || ||| || ||| ||||||| |||||||    
T  38869815 tgctcctcctcaaggtctcaggttcgattccctctggtgccaatttgagggggttagtttagcttcttc 38869883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 32662801 - 32662868
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||  | ||||||||||| ||| |||  ||||||| ||||||||||||| |||||||||||    
T  32662801 tgctcctccttgaggtctcaggttcgattttcttcggtgtcaatttaagtgggctaatttaacttctt 32662868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 46295144 - 46295211
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||||| ||||||||||| |||||| | |||| || |||  ||||||||||||| ||||||    
T  46295144 tgctcctcctcaaggtctcaggttcgattctccccggtgccaatttgggtgggctagtttagcttctt 46295211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 51948531 - 51948594
Alignment:
Q  5 cctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||| | ||||||||||||||||||||  |||||| ||||| ||| ||| |||||||||||    
T  51948531 cctcctcgaggtctcaggttcaattctctccagtgtcaatttaaatggactaatttaacttctt 51948594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 43728442 - 43728472
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattct 31  Q
    |||||||||||||||||||||||||||||||    
T  43728442 tgctcctcctcaaagtctcaggttcaattct 43728472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 18404910 - 18404845
Alignment:
Q  3 ctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    |||||| |||| ||||||||||| ||| |||  ||||||| |||||||||| ||||||| ||||||    
T  18404910 ctcctcatcaatgtctcaggttcgattatctaaggtgtcaatttaagtgggttagtttagcttctt 18404845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7539637 - 7539704
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||| ||||| ||||||||||| |||||||||  ||||| ||| || ||| |||||||||||||||    
T  7539637 tgctccttctcaaggtctcaggttcgattctctcttctgtcaatttgag-gggttagtttaacttcttc 7539704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8030233 - 8030165
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| |||||| |||| |||| |||| |||||| |||  |||||||| |||| |||||||    
T  8030233 tgctcctcctcaaggtctcaagttcgattccctctagtgtcaatttgggtgggctaatttagcttcttc 8030165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13015474 - 13015526
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtggg 53  Q
    ||||||||||| |||||||| |||| |||||||| ||||||| |||| |||||    
T  13015474 tgctcctcctcgaagtctcatgttcgattctctcaggtgtcaatttaggtggg 13015526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2882997 - 2883052
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggcta 56  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||    
T  2882997 tgctcctcctcaaggtctcaggttcaattctctctggtggcaatttaggtgggcta 2883052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9183220 - 9183160
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||  |||||||| ||||    
T  9183220 tgctcctcctcaaagtctcaggttcgattatctctggtgtcaatttgggtgggctaattta 9183160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 21558175 - 21558243
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| ||||||||||||| || |||| ||||| || |||| |||||||    
T  21558175 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttaggtgggttaatttagcttcttc 21558243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15137600 - 15137660
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||||| ||||||||||  |||||||||||||||| |||  |||||||| ||||    
T  15137600 tgctcctcctcaaggtctcaggttagattctctctggtgtcaatttgggtgggctaattta 15137660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 26459439 - 26459371
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| ||||||||||||| || ||| |  ||| ||||||| |||||||    
T  26459439 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgaaggggttagtttagcttcttc 26459371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 30579386 - 30579450
Alignment:
Q  5 cctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||| ||||||||||| ||| ||||||||| || |||| |||||||| |||| |||||||    
T  30579386 cctcctcaaggtctcaggttcgattttctctggtgccaatttaggtgggctaatttagcttcttc 30579450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 41519293 - 41519226
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| |||||||||||  |||||||| |||||| |||| |||||||| |||| |||||||    
T  41519293 tgctcctcctcaaggtctcaggttcgcttctctct-gtgtcaatttaggtgggctaatttagcttcttc 41519226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 21570060 - 21569997
Alignment:
Q  2 gctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaactt 65  Q
    |||||||||||| |||||| |||| ||| |||||||||||| ||| || ||| |||||||||||    
T  21570060 gctcctcctcaaggtctcaagttcgattttctctggtgtcaatttgagggggttagtttaactt 21569997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 39631892 - 39631959
Alignment:
Q  2 gctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||||||||||| ||||||||||| ||||||||| ||| || ||| || ||| ||||||| |||||||    
T  39631892 gctcctcctcaaggtctcaggttcgattctctcttgtgccaatttgagggggttagtttagcttcttc 39631959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 33222423 - 33222477
Alignment:
Q  7 tcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||| ||||||||||| |||||||||||||||| ||| || ||| |||||||    
T  33222423 tcctcaaggtctcaggttcgattctctctggtgtcaatttgagagggttagttta 33222477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 279981 - 279916
Alignment:
Q  3 ctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    |||||||| || |||||||||||||||||||| |||| || |||  |||||||| |||| ||||||    
T  279981 ctcctccttaaggtctcaggttcaattctctccggtgccaatttgggtgggctaatttagcttctt 279916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38374628 - 38374563
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttc 66  Q
    ||||||||||||| |||| |||||| |||||| | |||| || |||| ||||||||||||| ||||    
T  38374628 tgctcctcctcaaggtcttaggttcgattctccccggtgccaatttaggtgggctagtttagcttc 38374563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 41975948 - 41976001
Alignment:
Q  15 gtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    |||||| |||| ||||||||| |||||| ||||||||||||| |||| ||||||    
T  41975948 gtctcaagttcgattctctctagtgtcaatttaagtgggctaatttagcttctt 41976001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7309403 - 7309470
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||| | |||||| |||| |||||||| | ||||| ||||||||||||| |||| |||||||    
T  7309403 tgctcctcctcgaggtctcaagttcgattctctccg-tgtcaatttaagtgggctaatttagcttcttc 7309470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11700212 - 11700271
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||||| ||||||||||| ||||||||| ||| || ||| ||||||||| ||||    
T  11700212 tgctcctcctcaaggtctcaggttcgattctctct-gtgccaatttgagtgggctaattta 11700271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 42712005 - 42712065
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||||| |||||| |||| |||||| || |||||| |||| |||||||| ||||    
T  42712005 tgctcctcctcaaggtctcatgttcgattctccctagtgtcaatttaggtgggctaattta 42712065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 43590954 - 43591022
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| |||||| || ||| || || | |||||||| |||| |||||||    
T  43590954 tgctcctcctcaatgtctcaggttcgattctccctagtgccaattaaggtgggctaatttagcttcttc 43591022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 48983755 - 48983695
Alignment:
Q  8 cctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    |||||| ||||||||||| |||| |||| |||||| |||  |||||||| |||||||||||    
T  48983755 cctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttaacttctt 48983695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1800 - 1868
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||  |||||||||||||| ||| ||| |||| ||||| |||||||||||||||    
T  1800 tgctcctcctcaaggtctagggttcaattctctccggtatcaatttaggtgggttagtttaacttcttc 1868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24507565 - 24507497
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||  |||||||||||||| ||| ||| |||| ||||| |||||||||||||||    
T  24507565 tgctcctcctcaaggtctagggttcaattctctccggtatcaatttaggtgggttagtttaacttcttc 24507497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 24334054 - 24333987
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||||| |||||||||||||||||| | |||| || |||  ||||||||||||| ||||||    
T  24334054 tgctcctcctcaaggtctcaggttcaattctcaccggtgccaatttgggtgggctagtttagcttctt 24333987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 2484769 - 2484835
Alignment:
Q  3 ctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||| || ||||||| |||||| |||||||| ||||||| ||| ||||||||| ||||||||||||    
T  2484769 ctccttcttaaagtctgaggttcgattctctccggtgtcaatttgagtgggctaatttaacttcttc 2484835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 3925794 - 3925858
Alignment:
Q  4 tcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    |||| ||||||||||||| |||||||||||||||| ||| ||| || ||| ||||||| ||||||    
T  3925794 tccttctcaaagtctcagattcaattctctctggtatcaatttgagggggttagtttagcttctt 3925858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 11103464 - 11103396
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||||||||| || ||||| | ||| ||||||||||||| || |||||||| |||| ||||||||||||    
T  11103464 tgctcctccttaaggtctccgattcgattctctctggtgccaatttaagtgagctaatttaacttcttc 11103396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13227187 - 13227119
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||| |||||||| |||| ||||||||   |||||||||| |||||| | ||||||||||||    
T  13227187 tgctcctcctcgaagtctcaagttcgattctctcatatgtcagtttaggtgggccaatttaacttcttc 13227119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20213088 - 20213156
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| |||| |||| |||||| |||  |||||||| |||| |||||||    
T  20213088 tgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttcttc 20213156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 22107111 - 22107179
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| |||| |||| |||||| |||  |||||||| |||| |||||||    
T  22107111 tgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttcttc 22107179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 15951331 - 15951264
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||||| |||||| |||||||||||||||||  || ||| || ||| ||||||| ||||||    
T  15951331 tgctcctcctcaaggtctcatgttcaattctctctggtaccaatttgagagggttagtttagcttctt 15951264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 11306203 - 11306135
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||| || |||| ||||||||||| ||||||||||||| || ||| || ||| ||||||| |||||||    
T  11306203 tgctcatcttcaaggtctcaggttcgattctctctggtgccaatttgagggggttagtttagcttcttc 11306135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 24256843 - 24256783
Alignment:
Q  9 ctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||| |||||| |||| |||||||||||||||| |||| || || ||||||| |||||||    
T  24256843 ctcaaggtctcaagttcgattctctctggtgtcaatttaggtaggttagtttagcttcttc 24256783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28363984 - 28364052
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||| ||| ||| |||||||||||| |||   ||||||| ||||| ||||||    
T  28363984 tgctcctcctcaaggtctcagattcgattatctctggtgtcaatttggatgggctaatttaatttcttc 28364052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 25627104 - 25627171
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||| || ||| ||||||| |||||||    
T  25627104 tgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttgag-gggttagtttagcttcttc 25627171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 37258395 - 37258328
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||||| || |||||||| |||||||||||||||| ||| || ||| ||||||| ||||||    
T  37258395 tgctcctcctcaaggtttcaggttcgattctctctggtgtcaatttgagggggttagtttagcttctt 37258328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 16773854 - 16773922
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||| | ||||||||||| |||||||||| || || |||| |||||||| |||| |||||||    
T  16773854 tgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaatttagcttcttc 16773922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17028293 - 17028225
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||  |||| |||| |||||| |||| |||||||| |||| |||||||    
T  17028293 tgctcctcctcaaggtctcaggtttgattccctctagtgtcaatttaggtgggctaatttagcttcttc 17028225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 17155869 - 17155937
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||  ||||||| || || || ||| ||||||||| ||||||||||||    
T  17155869 tgctcctcctcaaggtctcaggtttgattctctgtgctgccaatttgagtgggctaatttaacttcttc 17155937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 21589335 - 21589403
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||| |||||| | ||||||||||| |||| |||||||| || |||| ||||||||||||| |||||||    
T  21589335 tgctactcctcgatgtctcaggttcgattccctctggtgccaatttaggtgggctagtttagcttcttc 21589403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29173537 - 29173604
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||| | || |||||||| ||| |||||||||||| |||| |||||||| |||| ||||||    
T  29173537 tgctcctcctcgaggtttcaggttcgattatctctggtgtcaatttaggtgggctaatttagcttctt 29173604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30700647 - 30700580
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||| || || ||||||||||||||| |||||||||||| || ||  ||| ||||||||||||||    
T  30700647 tgctccttcttaaggtctcaggttcaattatctctggtgtcaattgaaaggggttagtttaacttctt 30700580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14285208 - 14285246
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtg 39  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  14285208 tgctcctcctcaaggtctcaggttcgattctctctggtg 14285246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 29692415 - 29692382
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctc 34  Q
    |||||||||||||||||||||||| |||||||||    
T  29692415 tgctcctcctcaaagtctcaggtttaattctctc 29692382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43442243 - 43442284
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtca 42  Q
    ||||||||||||| ||||||||||| |||||||||| |||||    
T  43442243 tgctcctcctcaaggtctcaggttcgattctctctgttgtca 43442284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 16457857 - 16457917
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||||| |||||| ||||||||||| | |||| || |||  |||||||||||||    
T  16457857 tgctcctcctcaaggtctcatgttcaattctccccggtgccaatttgcgtgggctagttta 16457917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 17877162 - 17877122
Alignment:
Q  28 ttctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||||||| |||| |||||||| |||||||||||    
T  17877162 ttctctctggtgtcaatttaggtgggctaatttaacttctt 17877122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18974007 - 18974067
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||||| || |||||||| |||||| |||||| || ||| |||||| |||||||    
T  18974007 tgctcctcctcaaggtgtcaggttcgattctccctggtgccaatttgagtgggttagttta 18974067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 30000167 - 30000231
Alignment:
Q  5 cctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||| | ||||||||||| | |||||||| || || |||||||||| || ||||||||||||    
T  30000167 cctcctcgaggtctcaggttcgactctctctgatgccaatttaagtgggttaatttaacttcttc 30000231  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 31074282 - 31074346
Alignment:
Q  4 tcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||  |||||||||| ||||||||||||| || |||||| ||  ||||||| ||||||    
T  31074282 tcctcctcaagatctcaggttcgattctctctggtgccaatttaagaggattagtttagcttctt 31074346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11251134 - 11251198
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaactt 65  Q
    ||||||||||||| ||||||||||  |||||||||||||||| |||| ||| |||| ||||||||    
T  11251134 tgctcctcctcaaggtctcaggtttgattctctctggtgtcaatttaggtgtgctaatttaactt 11251198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4060243 - 4060175
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||| ||||||||  |||||||||| |||||||||||||||| ||| || ||| ||||||| |||||||    
T  4060243 tgcttctcctcaagatctcaggttcgattctctctggtgtcaatttgagggggttagtttagcttcttc 4060175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19244156 - 19244216
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||| ||| ||||||||||| ||||||||||||| || ||| ||||||||| ||||    
T  19244156 tgctcctccccaaggtctcaggttcgattctctctggtgccaatttgagtgggctaattta 19244216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29503318 - 29503385
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||| |||||| | ||||||| ||||||||||| | |||| |||||||    
T  29503318 tgctcctcctcaaggtctcaggttcgattctc-ccggtgtcaatttaagtgggcaaatttagcttcttc 29503385  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 35203412 - 35203344
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||| |||||||||||||| |||| ||| ||| |||||||| |||||||||| || |||| |||||||    
T  35203412 tgctcatcctcaaagtctcatgttcgattatctttggtgtcaatttaagtgggttaatttagcttcttc 35203344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 9577883 - 9577950
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    |||||||||||||  ||||||||||||||| |||| |||| | |||| ||| |||| |||||||||||    
T  9577883 tgctcctcctcaatatctcaggttcaattccctctagtgttaatttaggtgtgctaatttaacttctt 9577950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33839289 - 33839251
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  33839289 tgctcctcctcaaggtctcaggttcaattctttctggtg 33839251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37971942 - 37972008
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttct 67  Q
    |||||||  |||||||||||||||| |||||||| |||| || |||| |||||||| |||| |||||    
T  37971942 tgctccttgtcaaagtctcaggttcgattctctccggtgccaatttaggtgggctaatttagcttct 37972008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1435111 - 1435178
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||| |||||||| ||||||| ||| |||||||||||||||| |||  |||||||| |||| |||||||    
T  1435111 tgcttctcctcaaggtctcag-ttcgattctctctggtgtcaatttgggtgggctaatttagcttcttc 1435178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21304023 - 21303955
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||||||||| || || |||||||| |||||||||||||||| ||| || ||| || |||| |||||||    
T  21304023 tgctcctcctgaaggtttcaggttcgattctctctggtgtcaatttgagggggttaatttagcttcttc 21303955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 23230634 - 23230566
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||||||  ||||||||||||||||  |||||| |||   || |||| ||||||||||||    
T  23230634 tgctcctcctcaaagttccaggttcaattctctccagtgtcaatttggatgagctaatttaacttcttc 23230566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 34041617 - 34041549
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| ||||||||||  |||| |||||||| || ||| || ||| ||||||| |||||||    
T  34041617 tgctcctcctcaaggtctcaggtttgattccctctggtgccaatttgagggggttagtttagcttcttc 34041549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 42922461 - 42922529
Alignment:
Q  1 tgctcctcctcaaag-tctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    ||||||||||||||| |||||||||| ||||||||||||| || ||| |  ||| ||||||| ||||||    
T  42922461 tgctcctcctcaaaggtctcaggttcgattctctctggtgccaatttgatggggttagtttagcttctt 42922529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6948 - 6883
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||||||||||||||| |   |||||||||||| ||| ||||||||| |||| |||||||    
T  6948 tgctcctcctcaaagtctcaggttcga---tctctggtgtcaatttgagtgggctaatttagcttcttc 6883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 42690 - 42625
Alignment:
Q  4 tcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||  ||||| |||| ||||||| |||||||| |||| |||||||| ||||||||||||    
T  42690 tcctcctcaagatctcaagttcgattctctatggtgtcaatttaggtgggctaatttaacttcttc 42625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 45774 - 45721
Alignment:
Q  15 gtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    |||||| |||| |||||||||||||||| |||| ||||| ||||||||||||||    
T  45774 gtctcatgttcgattctctctggtgtcaatttaggtgggttagtttaacttctt 45721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 41662 - 41602
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagttta 61  Q
    ||||||||||| | |||||||||||||||||||||| ||||| |||  |||||||| ||||    
T  41662 tgctcctcctcgaggtctcaggttcaattctctctgatgtcaatttgggtgggctaattta 41602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 95000 - 94952
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaag 49  Q
    ||||||||||||| ||||||||||||||| ||||||||| || ||||||    
T  95000 tgctcctcctcaaggtctcaggttcaattatctctggtgccaatttaag 94952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19991 - 19952
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgt 40  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  19991 tgctcctcctcaaggtctcaggttcgattctctctggtgt 19952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 49353 - 49420
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttctt 68  Q
    |||||||| || | || |||||||| |||||||| ||||||| |||||||||| || |||||||||||    
T  49353 tgctcctcttcgaggtatcaggttcgattctctccggtgtcaatttaagtgggttaatttaacttctt 49420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2740 - 2702
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtg 39  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  2740 tgctcctcctcaaggtctcaggttcgattctctctggtg 2702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15352 - 15284
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||| | ||||||||||| |||||||| | || || |||| |||||||| |||| |||||||    
T  15352 tgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgggctaatttagcttcttc 15284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24100 - 24168
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    |||||||| || |||| |||||||| ||| |||||| || || ||| ||||||||| ||||||||||||    
T  24100 tgctcctcttcgaagtgtcaggttcgattatctctgatgccaatttgagtgggctaatttaacttcttc 24168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 25376 - 25308
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||| ||||| ||||||||||| ||| |||||||||||| ||| | || |||| |||| |||||||    
T  25376 tgctccttctcaaggtctcaggttcgattatctctggtgtcaatttgaatgagctattttagcttcttc 25308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42549 - 42501
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaag 49  Q
    |||||||||||| |||||||||||| ||||||| ||||| || ||||||    
T  42549 tgctcctcctcagagtctcaggttcgattctctttggtgccaatttaag 42501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12236 - 12304
Alignment:
Q  1 tgctcctcctcaaagtctcaggttcaattctctctggtgtcagtttaagtgggctagtttaacttcttc 69  Q
    ||||||||||||| |||| | ||| ||||||||||||| ||| |||| ||||  ||||||| |||||||    
T  12236 tgctcctcctcaaggtctaaagttaaattctctctggtatcaatttaggtggattagtttagcttcttc 12304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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