View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_36 (Length: 302)
Name: NF17758_low_36
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 38038722 - 38039013
Alignment:
| Q |
1 |
acatcattaagtgtttttagtattctgcaacaaacatgattttactagcttattgggtattatggtataaggtaccacttttttgatgtacaatataaaa |
100 |
Q |
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| T |
38038722 |
acatcattaagtgtttttagtattttgcaacaaacatcattttactagcttattgggtattatggtataaggtaccacttttttgatgtacaatataaaa |
38038821 |
T |
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| Q |
101 |
gag-aaatacagtaaaaagagactgactatgattaagcaattctgaaaactggggtttatatcttgttgtagattcaccaatttttcttgcttatacaag |
199 |
Q |
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| T |
38038822 |
gaggaaatacagtaaaaagagactaactatgattaagcaattctgaaaactggggtttatatcttgttgtagattcaccaatttttcttgcttatacaag |
38038921 |
T |
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| Q |
200 |
cttaagcatatagtataaatgaatcatcatctaacggaactgctagtccttaagccaattctttgtatttgaggtgatgacaccacaggttc |
291 |
Q |
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| T |
38038922 |
cttaagcatatagtataaatgaatcatcatctaacggaactgctagtccttaagccaattctttgtatttgaggtgatgacaccacaggttc |
38039013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 38025340 - 38025404
Alignment:
| Q |
21 |
tattctgcaacaaacatgattttactagcttattgggtattatggtataaggtaccacttttttg |
85 |
Q |
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| T |
38025340 |
tattttgcaacgaacaagattttacttgcttattgggttttgtggtgtaaggtaccacttttttg |
38025404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 38030739 - 38030803
Alignment:
| Q |
21 |
tattctgcaacaaacatgattttactagcttattgggtattatggtataaggtaccacttttttg |
85 |
Q |
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| T |
38030739 |
tattttgcaacgaacaagattttacttgcttattgggttttgtggtgtaaggtaccacttttttg |
38030803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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