View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_45 (Length: 276)
Name: NF17758_low_45
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 25953767 - 25953522
Alignment:
| Q |
16 |
cataggatataagcatataaagaatgaaaagcttagctatcataggataagaaacatattaagaatgaaaaggctagctaccactttcttcatcaacatt |
115 |
Q |
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| T |
25953767 |
cataggataggagcatataaagaatgaaaagcttagctatcataggataagaaacatattaagaatgaaaaggctagctaccactttcttcatcaacatt |
25953668 |
T |
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| Q |
116 |
tcttgattagcctatgtaattattatttgtaatcttttctcttgtaattttcattaattagttagagatttctcaacattttttcaagttgaaaatacag |
215 |
Q |
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| T |
25953667 |
tcttgattagcctatgtaattattatttg-aatcttttcacttgtaattttcattaattagttagagatttctcaacattttttcaagttgaaaatacag |
25953569 |
T |
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| Q |
216 |
ttagaagttagatatgattaggtggaaatttgttaggttagtttttg |
262 |
Q |
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| T |
25953568 |
ttagaagttagatatgattaggtggaaatttgttaggttagtttttg |
25953522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 25950455 - 25950412
Alignment:
| Q |
103 |
cttcatcaacatttcttgattagcctatgtaattattatttgta |
146 |
Q |
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| T |
25950455 |
cttcatcaacatttcttgattagcctatgtgattattatttgta |
25950412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 25950266 - 25950219
Alignment:
| Q |
214 |
agttagaagttagatatgattaggtggaaatttgttaggttagttttt |
261 |
Q |
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| T |
25950266 |
agttagaagttagctatgatttggtggaagtttgttatgttagttttt |
25950219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 46959071 - 46959029
Alignment:
| Q |
216 |
ttagaagttagatatgattaggtggaaatttgttaggttagtt |
258 |
Q |
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| T |
46959071 |
ttagaagttagttatgattaggtggaagtttgttagattagtt |
46959029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 38467139 - 38467175
Alignment:
| Q |
222 |
gttagatatgattaggtggaaatttgttaggttagtt |
258 |
Q |
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| T |
38467139 |
gttagttatgattaggtggaaatttgttatgttagtt |
38467175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 8750853 - 8750885
Alignment:
| Q |
93 |
ctaccactttcttcatcaacatttcttgattag |
125 |
Q |
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| T |
8750853 |
ctaccactttcttcatcaacattacttgattag |
8750885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 41973921 - 41973949
Alignment:
| Q |
94 |
taccactttcttcatcaacatttcttgat |
122 |
Q |
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| T |
41973921 |
taccactttcttcatcaacatttcttgat |
41973949 |
T |
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