View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_5 (Length: 630)
Name: NF17758_low_5
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 150 - 617
Target Start/End: Complemental strand, 2176388 - 2175921
Alignment:
| Q |
150 |
gttttacttctaagaacaatttattcgagtcaatcagttaattattgattttcttgacattggaactgggcaatggaattggccaactttctatttatga |
249 |
Q |
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| T |
2176388 |
gttttacttctaagaacaatttattcgagtcaatcagttaattattgattttcttgacattggaactgggcaatggaattggccaactttctatttatga |
2176289 |
T |
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| Q |
250 |
tgatctgaatgatttggtttgacaaaagcatgttattttttagggaaggcttcccttcttgagcgttttatacatagataattttcagttatgtggtaga |
349 |
Q |
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| T |
2176288 |
tgatctgaatgatttggtttgacaaaagcctgttattttttagggaaggcttcccttcttgagcgttttatacatagataattttcagttatgtggtaga |
2176189 |
T |
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| Q |
350 |
aagtttttatcagaggttcgtaaggcnnnnnnnnnaatggcaaggtaagaagatatatatcaactatgaagcacgaacaccgaacacgatactaacatgg |
449 |
Q |
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| T |
2176188 |
aagtttttatcagaggttcgcaaggctttttttttaatggcaaggtaagaagatatatatcaactatgaagcacgaacaccagacacgacactgacatgg |
2176089 |
T |
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| Q |
450 |
acatgtcgatatggataaaattttnnnnnnntgagtgttgatgtcgcacacgacacatgttgaacatcaggacatatcttcaatgaggcgtgtcggtgcc |
549 |
Q |
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| T |
2176088 |
acatgtcgatatggataaaattttaagaaaatgagtgtcggtgtcgcacacgacatatgttgaacatcagggcatatcttcaatgaggcgtgtcggtgcc |
2175989 |
T |
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| Q |
550 |
atatataggagaaaacagaagtacaaactagacatatgacatataggtcaagtattacatgatattga |
617 |
Q |
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| T |
2175988 |
atatatatgagaaagcaaaagtacaaactaaacatatgacatataggtcaagtattacatgatattga |
2175921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 2176537 - 2176453
Alignment:
| Q |
1 |
atttgatatcttatcaatttcaatatgaaagtagttttagcaacatnnnnnnntgactgataatttgtattttcaacatctaact |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
2176537 |
atttgatatcttatcaatttcaatatgaaagtagttttagcaacataaaaaaatgactgataatttgtcttttcaacatctaact |
2176453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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