View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_50 (Length: 250)
Name: NF17758_low_50
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 38279248 - 38279144
Alignment:
| Q |
137 |
ttggctggatcaaaattgagaaatcttagagacaatcaatttagtcccctccactttcaccctaacttataagacatttcacctagattataaacatagt |
236 |
Q |
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| T |
38279248 |
ttggctggatcaaaattgagaaatcttagagacaatcaatttaatcccctccactttcatcataatttataagacatttcacctcgattataaacatagt |
38279149 |
T |
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| Q |
237 |
attat |
241 |
Q |
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||||| |
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| T |
38279148 |
attat |
38279144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 38274025 - 38273944
Alignment:
| Q |
26 |
tagtgatttatggtttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaacgt |
107 |
Q |
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| T |
38274025 |
tagtgatttataatttggaatgtgggttaaatttgatcataactgtgaaaacacagttcggactttttaatcaaaaaaacgt |
38273944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 26574092 - 26574026
Alignment:
| Q |
39 |
tttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaac |
105 |
Q |
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| T |
26574092 |
tttgaaatgtgagttgagtttgatcaagactatgtaaacacaatttggattttataatccaaaaaac |
26574026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 26573895 - 26573813
Alignment:
| Q |
22 |
attttagtgatttatggtttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaa |
104 |
Q |
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| T |
26573895 |
attttagtgatttataatttgaaatgtgagctgaatttaattaaaactgtgtaaacaaagttcgaattatataatctaaaaaa |
26573813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 35756398 - 35756369
Alignment:
| Q |
74 |
aaacacaatttggattttataatccaaaaa |
103 |
Q |
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| T |
35756398 |
aaacacaatttggattttataatccaaaaa |
35756369 |
T |
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