View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_53 (Length: 238)
Name: NF17758_low_53
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_53 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 4242795 - 4242578
Alignment:
| Q |
21 |
cctctagtactcttgctttatttgcatccactgctactacaataatagatccatcacaacgccaatagcaaaaactactctagttttctccataaggtgc |
120 |
Q |
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| T |
4242795 |
cctccagtactcttgctttgtttgcatccactgctactacaataatagatccatcacaacaccaatagcaaaaactactctagttttctccataaggtcc |
4242696 |
T |
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| Q |
121 |
catcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaaatgtggcggacctg |
220 |
Q |
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| T |
4242695 |
catcttgtttcacatccttcttcattggtgtgaacctttcttcttgtccttgttccagatgtgtatactttagaaggcctatgaaaaagtggcggacctg |
4242596 |
T |
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| Q |
221 |
agcaaatttgctaactcc |
238 |
Q |
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| T |
4242595 |
agcaactttgctaactcc |
4242578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 4235687 - 4235597
Alignment:
| Q |
117 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaaa |
207 |
Q |
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| T |
4235687 |
gtgccatcttgtttcaattccttcttcatcagtgtgaacctttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaa |
4235597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 28948905 - 28948995
Alignment:
| Q |
117 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaaa |
207 |
Q |
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| T |
28948905 |
gtgccatcttgtttcacttccttcttcatcagtttgaacctttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaaa |
28948995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 34830050 - 34830139
Alignment:
| Q |
117 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaa |
206 |
Q |
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| T |
34830050 |
gtgccatcttgtttcacttccttcttcatcagtttgaacctttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaa |
34830139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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