View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17758_low_54 (Length: 233)
Name: NF17758_low_54
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_54 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 34547842 - 34547646
Alignment:
| Q |
17 |
aaaagccttatatcaaaattcgtatgccaattgttaaaagaactgcccctgtgattagagtatttttaatgaccgtaccttcggaatatttttcttccac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
34547842 |
aaaagccttatatcaaaattcgtatgccaattgttaaaagaactgtccctgtgattagagtatttttaatggccgtaccttcggaataattttcttccac |
34547743 |
T |
|
| Q |
117 |
taataaaagtttactttagttgattaaccgggttgtgtctagggtcagaacatgcctcaaactcaaagaacaatgacataagtattaacatattacatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34547742 |
taataaaagtttactttagttgattaaccggg--ctgtctagggtcagaacatgcctcaaactcaaagaacaatgacataagtattaacatattacatc |
34547646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 34551121 - 34551023
Alignment:
| Q |
31 |
aaaattcgtatgccaattgttaaaagaactgcccctgtgattagagtatttttaatgaccgtaccttcggaatatttttcttccactaataaaagtttac |
130 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||| | ||| |||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
34551121 |
aaaattcctatgccaattgttaaaagaattgctcctataatttgagtatttttaacagccgtacc-tcggaatatttttcttccataaataaaaatttac |
34551023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University