View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_6 (Length: 626)
Name: NF17758_low_6
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 6 - 610
Target Start/End: Complemental strand, 51909695 - 51909089
Alignment:
| Q |
6 |
atcacagataactaatctaaagcatgcaagtttcagggcaaacaggctgtgtggagaaataccacaaactagaccattcaacatctttccaccagttgct |
105 |
Q |
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| T |
51909695 |
atcacagataactaatctaaagcatgcaagtttcagggcaaacaggctgtgtggagaaataccacaaactagaccattcaacatctttccaccagttgct |
51909596 |
T |
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| Q |
106 |
tatgcccacaacttgtgcttatgtggcaaacctttggggccatgcaagggatagaaataagggacaattggtcagtgagatgctgactaaactataatat |
205 |
Q |
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| T |
51909595 |
tatgcccacaacttgtgcttatgtggcaaacctttggggccatgcaagggatagaaataagggacaattggtcagtgagatgctgactaaactataatat |
51909496 |
T |
|
| Q |
206 |
attttcatgccttatgaccattgttacacgagatagattaggctccacctatattaattatctttcatttccagctagagcagcacaatgcttattgttt |
305 |
Q |
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| T |
51909495 |
attttcatgccttatgaccattgttacacgagatagattaggctccacctatattaattatctttcatttccagctagagcagcacaatgcttattgttt |
51909396 |
T |
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| Q |
306 |
agttcaatttattcacaattcaatatta-tttgaataataatgtattgatttttatttttacatgttatatttgaagtaaagatagtcctacccatgttt |
404 |
Q |
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| T |
51909395 |
agttcaatttattcacaattcaatattattttgaataataatgtattgatttttatttttacatgttatatttgaagtaaagatagtcctacccatgttt |
51909296 |
T |
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| Q |
405 |
gattcatactttgtataatgcgtggtcacactgaactgcagcaaactggccactggcacatgtgtggaactttatttcagttgattgcctcaatactcag |
504 |
Q |
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| T |
51909295 |
gattcatactttgtataatgcgtggtcacactgaactgcagcaaactggccactggcacatgtgtggaactttatttcagttgattgcctcaatactcag |
51909196 |
T |
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| Q |
505 |
ttaacaatccctcaaagtgcatacttcaataatcatgttgcatacttgatgcaaaattatcattagtttgcatt-aaaaagaattgactaaaactgtgtt |
603 |
Q |
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| T |
51909195 |
ttaacaatccctcaaagtgcatacttcaataatcatgttgcatacttgatacaaaattatcattagtttgcattaaaaaagaattgactaaaactgtgtt |
51909096 |
T |
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| Q |
604 |
taaaaag |
610 |
Q |
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| T |
51909095 |
taaaaag |
51909089 |
T |
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