View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_7 (Length: 606)
Name: NF17758_low_7
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 16406898 - 16406495
Alignment:
| Q |
1 |
caaacaaacaaaaaacatgtcgattgtcagaacacgcaaaaaatttaaagtgttgatgatgcatggtcttctttatgttgaatacactgatttttggagg |
100 |
Q |
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| T |
16406898 |
caaacaaacaaaaaacatgttgattatcataacacgctaaaattttgaagtgttgatggtgcatggttttctttatgttgaatacattgatttttgtagg |
16406799 |
T |
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| Q |
101 |
ctccatttgaggtgagcaacttactcaaacttgtcgttaggagaaaacatttaccaccgtccagtgagaaagttctatactataggataggataaaccac |
200 |
Q |
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| T |
16406798 |
ctccatttgaggtgagcaacttactcaaacttgtcgttaggagaaaaca--------------gtgagaaagttctatactataggataggataaactac |
16406713 |
T |
|
| Q |
201 |
atcgattgtccacaccaaaattataacatacccctctacgtctctcacttttcctttacaaggataacgcccaaggagttacaaagatattgttttcgct |
300 |
Q |
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| T |
16406712 |
atcgattgtccacaccaaaattataacatacccctctacgtctctcacttc-cctttacaaggagaatgcccaaggagttacaaagatattgttttcgct |
16406614 |
T |
|
| Q |
301 |
aaaaaggtgaaatatatggtcatggttcgataaaaatgaaaataaatattcattgcaattaggataatatattctgaattcatgcagctaatatatggat |
400 |
Q |
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| T |
16406613 |
aaaaaggtgaaatatatgatcatggtttgataaaaacgaaaataaatattcattgcaattaggataatatattctaacttcatgcagctaatatatggat |
16406514 |
T |
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| Q |
401 |
gacaattggatcaagatat |
419 |
Q |
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| T |
16406513 |
gacaattggatcaagatat |
16406495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 485 - 588
Target Start/End: Complemental strand, 16406464 - 16406361
Alignment:
| Q |
485 |
agcttgaatcatgatctaatgaacactaatctagtagcagttggagtgcaaactagaagtagagaatgaagacttgagctcgagaaagtggtggtggtgt |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16406464 |
agcttgaatcatgatctaatgaacactaatctagtagcagttggagtgcaaactagaagtagagaatgaagacttgagctcgagaaagcagtggtggtgt |
16406365 |
T |
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| Q |
585 |
atct |
588 |
Q |
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|||| |
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| T |
16406364 |
atct |
16406361 |
T |
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