View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17758_low_9 (Length: 562)

Name: NF17758_low_9
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17758_low_9
NF17758_low_9
[»] chr2 (3 HSPs)
chr2 (14-544)||(13280169-13280699)
chr2 (291-365)||(27725082-27725156)
chr2 (291-365)||(27736330-27736404)
[»] chr8 (9 HSPs)
chr8 (305-449)||(27183074-27183218)
chr8 (306-474)||(27231068-27231236)
chr8 (323-449)||(18140245-18140371)
chr8 (321-375)||(31135829-31135883)
chr8 (336-457)||(24465491-24465612)
chr8 (291-486)||(13473678-13473871)
chr8 (323-437)||(12723980-12724094)
chr8 (327-377)||(26531546-26531596)
chr8 (326-474)||(12721446-12721594)
[»] chr5 (4 HSPs)
chr5 (289-474)||(9763456-9763641)
chr5 (348-437)||(19163981-19164070)
chr5 (410-454)||(42841524-42841568)
chr5 (342-457)||(42777087-42777202)
[»] chr1 (2 HSPs)
chr1 (301-403)||(40399690-40399792)
chr1 (289-388)||(44188381-44188480)
[»] scaffold2107 (1 HSPs)
scaffold2107 (309-431)||(1-123)
[»] chr3 (2 HSPs)
chr3 (333-475)||(15861795-15861937)
chr3 (305-471)||(2702865-2703031)
[»] chr6 (2 HSPs)
chr6 (323-457)||(32745710-32745844)
chr6 (323-377)||(29136450-29136504)
[»] chr4 (2 HSPs)
chr4 (321-457)||(9594605-9594741)
chr4 (323-377)||(4876027-4876081)
[»] scaffold0129 (1 HSPs)
scaffold0129 (334-377)||(9634-9677)
[»] chr7 (1 HSPs)
chr7 (327-377)||(25627373-25627423)


Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 14 - 544
Target Start/End: Complemental strand, 13280699 - 13280169
Alignment:
Q  14 aggtagagactcgggaaggttagaaggaatgacatgaacttcgttagtagttgggttccacaacactatctgtgaaggatcaaaccagttgaagatacaa 113  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13280699 aggtagagactcgggaaggttagaaggaacgacatgaacttcgttagtagttgggttccacaacactatctgtgaaggatcaaaccagttgtagatacaa 13280600  T
Q  114 agaataccatcaatagcagaacacaaaatactaatataatcaaggaagtcattctgttgaatttgaacttgaggtggcagatccaatttgatctctttct 213  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13280599 agaataccattaatagcagaacacaaaatactaatataatcaaggaagtcattctgttgaatttgaacttgaggtggcagatccaatttgatctctttct 13280500  T
Q  214 caaacttctcgcctgtaagtaaagacagcttcttcattggatccaaaaaccagtgaaagatgaggcaagcgtcatcatcatcataccgtgaatgagattt 313  Q
    |||||||||| ||||| || ||||||| |||||||| ||||||||||| ||||||| ||||||| |||||||| ||||||||||||| ||  ||||||||    
T  13280499 caaacttctcacctgtgaggaaagacaacttcttcactggatccaaaacccagtgacagatgagacaagcgtcgtcatcatcataccctgtttgagattt 13280400  T
Q  314 ggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaagaggtttaata 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  13280399 ggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatttgcgaacacaagcaaagcgtttaagatgtttaata 13280300  T
Q  414 gggagtttagagagaatagagaaaacaatatcatcgggtatataagtaccactaaccttctcaaacgttggaggagacataaaggagtttttgaacctgc 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13280299 gggagtttagagagaatagagaaaacaatatcatcgggtatataagtaccactaaccttctcaaacgttggaggagacataaaggagtttttgaacctgc 13280200  T
Q  514 cgtgacgtgaattaatgttctgtgcaaagga 544  Q
    ||||||||||||||||| |||||||||||||    
T  13280199 cgtgacgtgaattaatgctctgtgcaaagga 13280169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 27725082 - 27725156
Alignment:
Q  291 tcatcataccgtgaatgagatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaa 365  Q
    |||| |||| |||||||| |||||||||||| ||| |||   |||||||| ||||||  ||||||||||||||||    
T  27725082 tcatgatacagtgaatgatatttggaaacaatatttttgtaaaacatgttgatgaaataagggttttcaaataaa 27725156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 27736330 - 27736404
Alignment:
Q  291 tcatcataccgtgaatgagatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaa 365  Q
    ||||||||| ||||||||  ||||||||||| ||| |||   |||||||| ||||||  ||||||||||||||||    
T  27736330 tcatcatacagtgaatgatgtttggaaacaatatttttgtaaaacatgttgatgaaataagggttttcaaataaa 27736404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 305 - 449
Target Start/End: Complemental strand, 27183218 - 27183074
Alignment:
Q  305 atgagatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaaga 404  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||||| ||||||||||| ||  |||||||| ||| || || |||    
T  27183218 atgagatttggaaacaagattgttgcggaacaagttgatgaaattagggttttgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgaga 27183119  T
Q  405 ggtttaatagggagtttagagagaatagagaaaacaatatcatcg 449  Q
    | ||||||||||||||||||||||||||| ||| |||| ||||||    
T  27183118 gatttaatagggagtttagagagaatagataaagcaatgtcatcg 27183074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 306 - 474
Target Start/End: Original strand, 27231068 - 27231236
Alignment:
Q  306 tgagatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaagag 405  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||||| ||||||||||| ||  |||||||| ||| || || ||||    
T  27231068 tgagatttggaaacaagattgttgcggaacaagttgatgaaattagggttttgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagag 27231167  T
Q  406 gtttaatagggagtttagagagaatagagaaaacaatatcatcgggtatataagtaccactaaccttct 474  Q
     |||||||| |||||||||||||||||| | | |||| |||||| | |||||  ||| |||||||||||    
T  27231168 atttaatagcgagtttagagagaatagatatagcaatgtcatcgtggatatagctacaactaaccttct 27231236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 449
Target Start/End: Original strand, 18140245 - 18140371
Alignment:
Q  323 attgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaagaggtttaatagggagttta 422  Q
    |||| |||||||||||||||||||| |||||||||  |||||| | ||||||||| |   | |||| | ||||||||| |||| ||||||||| | ||||    
T  18140245 attggtgcggaacatgttcatgaaattagggttttggaataaaagtgaccatgattttttagcacaggtaaaacgtttgagagatttaataggcaattta 18140344  T
Q  423 gagagaatagagaaaacaatatcatcg 449  Q
    |||||||| |||||| |||| ||||||    
T  18140345 gagagaatggagaaagcaatgtcatcg 18140371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 31135829 - 31135883
Alignment:
Q  321 agattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatg 375  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  31135829 agattgttgcggaacatgttcataaaaatagggttttcaaataaaagagaccatg 31135883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 336 - 457
Target Start/End: Complemental strand, 24465612 - 24465491
Alignment:
Q  336 atgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaagaggtttaatagggagtttagagagaatagaga 435  Q
    ||||| |||||| || ||||||| |||| | ||| ||||||| |||||||||||| ||| ||| | |||| ||||| ||| |||||||||||||| ||||    
T  24465612 atgttgatgaaattatggttttctaatagacgagtccatgatttgcgaacacaagaaaagcgtcttagagatttaacaggaagtttagagagaattgaga 24465513  T
Q  436 aaacaatatcatcgggtatata 457  Q
    |||||| |||||  ||||||||    
T  24465512 aaacaaaatcatttggtatata 24465491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 486
Target Start/End: Original strand, 13473678 - 13473871
Alignment:
Q  291 tcatcataccgtgaatgagatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaag 390  Q
    |||||||||  |||||| ||||||||||| | |||||||||||||||| | | |||| |||| ||  |||| ||| | ||||||| | | ||||| || |    
T  13473678 tcatcatacaatgaatgggatttggaaaccaaattgttgcggaacatggttaggaaagtaggattgccaaacaaaagtgaccatggtttacgaacgcatg 13473777  T
Q  391 caaaacgtttaagaggtttaatagggagtttagagagaatagagaaaacaatatcatcgggtatataagtaccactaaccttctcaaacgttggag 486  Q
     ||| || |||| || ||| | ||| ||||||||||||||| || |  |||||||||||||||||||  ||| ||| ||||||||||| |||||||    
T  13473778 taaaccgcttaacagatttgacaggaagtttagagagaatacagta--caatatcatcgggtatatagctactactcaccttctcaaatgttggag 13473871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 437
Target Start/End: Complemental strand, 12724094 - 12723980
Alignment:
Q  323 attgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaagaggtttaatagggagttta 422  Q
    |||| |||||||||||||||||||||||| |||||  || ||| ||||||||||| |  || ||||||  |||||| | |||| ||||| ||| | |||     
T  12724094 attggtgcggaacatgttcatgaaaatagagttttggaacaaaagagaccatgatttttgagcacaagtgaaacgtgtgagagatttaagaggcaatttg 12723995  T
Q  423 gagagaatagagaaa 437  Q
    |||||||| ||||||    
T  12723994 gagagaattgagaaa 12723980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 377
Target Start/End: Complemental strand, 26531596 - 26531546
Alignment:
Q  327 ttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgat 377  Q
    ||||||||||| ||||| ||| ||||||||||||||||| |||||||||||    
T  26531596 ttgcggaacatattcataaaactagggttttcaaataaaagagaccatgat 26531546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 12721594 - 12721446
Alignment:
Q  326 gttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaagaggtttaatagggagtttagag 425  Q
    |||||||||||| |||||||| ||||||||||  |||||| || |||||||| |   ||||||||  || ||||| |||| |||||  || | ||| |||    
T  12721594 gttgcggaacatattcatgaatatagggttttggaataaaagaaaccatgattttttaacacaagtgaatcgtttgagagatttaagcggcaatttggag 12721495  T
Q  426 agaatagagaaaacaatatcatcgggtatataagtaccactaaccttct 474  Q
    |||||||||||| |||| || ||| |||| | || |  |||||||||||    
T  12721494 agaatagagaaagcaatgtcgtcgtgtatgtgagaattactaaccttct 12721446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 289 - 474
Target Start/End: Complemental strand, 9763641 - 9763456
Alignment:
Q  289 catcatcataccgtgaatgagatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacaca 388  Q
    ||||||||||  ||| |||||||||| | |  |||||| |||| ||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  9763641 catcatcatagagtggatgagatttgaatatgagattggtgcgaaacatgttcataaaaatagggttttcaaacaaaagagaccatgatttgcgaacaca 9763542  T
Q  389 agcaaaacgtttaagaggtttaatagggagtttagagagaatagagaaaacaatatcatcgggtatataagtaccactaaccttct 474  Q
    || |||| | |||| || ||||| ||| ||||||||||||||| ||||| |||| ||||| ||||||||  ||| |||||||||||    
T  9763541 agaaaaatgcttaacagatttaacaggaagtttagagagaatacagaaagcaatgtcatctggtatatagctactactaaccttct 9763456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 19163981 - 19164070
Alignment:
Q  348 atagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaagaggtttaatagggagtttagagagaatagagaaa 437  Q
    ||||||||||||||||||  |||||||||| | | ||||||||  || ||||||| || ||||| ||| |||||||||||||| ||||||    
T  19163981 atagggttttcaaataaaacagaccatgatttacaaacacaagagaagcgtttaatagatttaacaggaagtttagagagaatggagaaa 19164070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 42841524 - 42841568
Alignment:
Q  410 aatagggagtttagagagaatagagaaaacaatatcatcgggtat 454  Q
    |||||||||||| ||||||||| |||| |||||||||||||||||    
T  42841524 aatagggagttttgagagaatatagaagacaatatcatcgggtat 42841568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 457
Target Start/End: Complemental strand, 42777202 - 42777087
Alignment:
Q  342 atgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaagaggtttaatagggagtttagagagaatagagaaaacaa 441  Q
    |||||| ||||||| ||||||||  ||||||||||| |||  |||||  |||| |||||    | ||||||||| | ||| ||||||||||||||| |||    
T  42777202 atgaaattagggttatcaaataagagagaccatgatttgcacacacattcaaatcgtttggttgatttaataggtaattttgagagaatagagaaagcaa 42777103  T
Q  442 tatcatcgggtatata 457  Q
    |||||||  |||||||    
T  42777102 tatcatcatgtatata 42777087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 301 - 403
Target Start/End: Original strand, 40399690 - 40399792
Alignment:
Q  301 gtgaatgagatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgttt 400  Q
    ||||||||||||||||||  | |||||||||| |||||||||||||| |||||||||| |||||| ||| ||||||| || ||||||||| ||| || ||    
T  40399690 gtgaatgagatttggaaatgatattgttgcggtacatgttcatgaaattagggttttcgaataaaagagtccatgatttgtgaacacaagaaaatcgctt 40399789  T
Q  401 aag 403  Q
    |||    
T  40399790 aag 40399792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 388
Target Start/End: Original strand, 44188381 - 44188480
Alignment:
Q  289 catcatcataccgtgaatgagatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacaca 388  Q
    ||||||||||  ||| ||||||||||||||  ||||||| ||||||||| || | |||| |||||||||||| |||    ||||||||| ||||||||||    
T  44188381 catcatcatagagtggatgagatttggaaatgagattgtcgcggaacattttgaagaaattagggttttcaagtaacaatgaccatgatttgcgaacaca 44188480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2107 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold2107
Description:

Target: scaffold2107; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 1 - 123
Alignment:
Q  309 gatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaagaggtt 408  Q
    ||||||| ||||||||||||||||||| | |  |||||| ||||| ||| ||||||| ||||||||||| | ||||| |||| ||| || || ||||  |    
T  1 gatttggtaacaagattgttgcggaacttttgaatgaaattagggctttgaaataaaagagaccatgatttacgaacgcaagtaaatcgcttgagagact 100  T
Q  409 taatagggagtttagagagaata 431  Q
    | |||||||||||||||||||||    
T  101 tgatagggagtttagagagaata 123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 475
Target Start/End: Original strand, 15861795 - 15861937
Alignment:
Q  333 aacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaagaggtttaatagggagtttagagagaatag 432  Q
    ||||| || |||||| ||||||||||||||||| |||||||| || ||||| | |||| ||| |  || |  | ||||| ||| || ||||||||||||     
T  15861795 aacatattgatgaaattagggttttcaaataaaagagaccataatttgcgagcgcaagaaaatctcttgatggatttaacaggaaggttagagagaataa 15861894  T
Q  433 agaaaacaatatcatcgggtatataagtaccactaaccttctc 475  Q
    |||||||||| |||| |||||||||| ||| || |||||||||    
T  15861895 agaaaacaatttcattgggtatataattactaccaaccttctc 15861937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 305 - 471
Target Start/End: Complemental strand, 2703031 - 2702865
Alignment:
Q  305 atgagatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaaga 404  Q
    |||||||||||| |  ||||||||||||||| |||| |||||| ||||||||||||| |||  |||||||||| |||   | || | ||| |  || | |    
T  2703031 atgagatttggacaacagattgttgcggaacttgtttatgaaattagggttttcaaacaaagaagaccatgatttgcaggcgcaggaaaacctcttgata 2702932  T
Q  405 ggtttaatagggagtttagagagaatagagaaaacaatatcatcgggtatataagtaccactaacct 471  Q
    | |||||  |  |||||||| | ||||||||||||||||||||| ||||||||  ||| ||||||||    
T  2702931 gatttaacggaaagtttagataaaatagagaaaacaatatcatcaggtatatatttactactaacct 2702865  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 457
Target Start/End: Original strand, 32745710 - 32745844
Alignment:
Q  323 attgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaagaggtttaatagggagttta 422  Q
    ||||||||| |||||||||||||||  ||  |||||| ||||  ||||||||||| ||||||| ||  |||| ||||||| || ||||| ||| |||||     
T  32745710 attgttgcgaaacatgttcatgaaatgagtattttcagataagagagaccatgatttgcgaacgcattcaaatcgtttaaaagatttaagaggtagtttt 32745809  T
Q  423 gagagaatagagaaaacaatatcatcgggtatata 457  Q
    || || || |||||  |||||||||| ||||||||    
T  32745810 gataggatggagaaggcaatatcatcaggtatata 32745844  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 29136504 - 29136450
Alignment:
Q  323 attgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgat 377  Q
    |||||||||||||||||||||||||  ||  |||||||||||  |||||||||||    
T  29136504 attgttgcggaacatgttcatgaaacgagtattttcaaataagagagaccatgat 29136450  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 9594605 - 9594741
Alignment:
Q  321 agattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatgtgcgaacacaagcaaaacgtttaagaggtttaatagggagtt 420  Q
    ||||||||||||||||||||||||||   |  ||||||| ||||  ||||||||| | ||||||||||  |||| || |||| || ||||||||| | ||    
T  9594605 agattgttgcggaacatgttcatgaagtgatcgttttcacataagagagaccatgctttgcgaacacattcaaatcgcttaaaagatttaataggtaatt 9594704  T
Q  421 tagagagaatagagaaaacaatatcatcgggtatata 457  Q
    |||| ||||| |||||   ||||||||| | ||||||    
T  9594705 tagatagaatggagaaggaaatatcatcagctatata 9594741  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 4876081 - 4876027
Alignment:
Q  323 attgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgat 377  Q
    |||| |||||||||||||||||||| ||||||||| ||||||| ||||| |||||    
T  4876081 attggtgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgat 4876027  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 377
Target Start/End: Complemental strand, 9677 - 9634
Alignment:
Q  334 acatgttcatgaaaatagggttttcaaataaatgagaccatgat 377  Q
    |||||||||||||| ||||||||||||||||  |||||||||||    
T  9677 acatgttcatgaaattagggttttcaaataagcgagaccatgat 9634  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 377
Target Start/End: Complemental strand, 25627423 - 25627373
Alignment:
Q  327 ttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgat 377  Q
    |||||||||||| ||||||||  |||||||||||||||  |||||||||||    
T  25627423 ttgcggaacatggtcatgaaagaagggttttcaaataagagagaccatgat 25627373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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