View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1775_high_3 (Length: 287)
Name: NF1775_high_3
Description: NF1775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1775_high_3 |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 31 - 277
Target Start/End: Complemental strand, 24422347 - 24422101
Alignment:
| Q |
31 |
ataagcaaaactgtatatgtatttagtccaaatttggattaaatgtactacttacttcttttacatatattttattccatttgaacatgagagaattatg |
130 |
Q |
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| T |
24422347 |
ataagcaaatttgtatatgtatttagtccaaatttggattaaatgtactacttacttcttttacatatattttattccatttgaacattagagaattctg |
24422248 |
T |
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| Q |
131 |
gcaaatttggaattaatttgactttatcataagtttcacacttgggctctcaatcatgcttgccaattcttctatctaaaagacaaaggatatactaatt |
230 |
Q |
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| T |
24422247 |
gcaaatttggaattaatttgactttatcatatgtttcacacttgggctctcaatcatgcttgccaattcttctatctaaaagacaaaggatatactaatt |
24422148 |
T |
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| Q |
231 |
tgaaatacacctgctttgacgcgttttcacaaatatttgttgttcat |
277 |
Q |
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| T |
24422147 |
tgaaatacaccttctttgacgcgttttcacaaatatttgttgttcat |
24422101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 24469414 - 24469668
Alignment:
| Q |
16 |
catattacatgtatcataagcaaaactgtatatgtatttagtccaaatttggattaaatgtactacttacttcttttacatatattttattccatttgaa |
115 |
Q |
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| T |
24469414 |
catattacatgtatcataagcaaaactgtatatgtatttagtccaaattttgattaaatgcactact----tcttttacgtatattttatttcaattgat |
24469509 |
T |
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| Q |
116 |
catgagagaattatggcaaatttggaattaatttgactttatcataagtttcacacttgggctctcaatcatgcttgccaattcttctatctaaaagaca |
215 |
Q |
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| T |
24469510 |
cattagaaaattctgtaaaaatggaaattaatttgactttatcaaatgtttcacacttgagttctcaatcatgcttgccaattcttctctctaaaagcca |
24469609 |
T |
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| Q |
216 |
aaggatatactaatttgaaatacacctgctttgacgcgttttcacaaatatttgttgtt |
274 |
Q |
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| T |
24469610 |
aaggatatactaatttgaaatacacctgcacgaacgcgttctcacatatttttgttgtt |
24469668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 24406959 - 24406887
Alignment:
| Q |
129 |
tggcaaatttggaattaatttgactttatcataagtttcacacttg-ggctctcaatcatgcttgccaattct |
200 |
Q |
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| T |
24406959 |
tggcaagttttgaattaatttgactttatcaattgtttcacacttgatgttctcaatcatgcttgccagttct |
24406887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 3674 - 3928
Alignment:
| Q |
16 |
catattacatgtatcataagcaaaactgtatatgtatttagtccaaatttggattaaatgtactacttacttcttttacatatattttattccatttgaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||||| || |||| |
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| T |
3674 |
catattacatgtatcataagcaaaactgtatatgtatttagtccaaattttgattaaatgcactact----tcttttacgtatattttatttcaattgat |
3769 |
T |
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| Q |
116 |
catgagagaattatggcaaatttggaattaatttgactttatcataagtttcacacttgggctctcaatcatgcttgccaattcttctatctaaaagaca |
215 |
Q |
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| T |
3770 |
cattagaaaattctgtaaaaatggaaattaatttgactttatcaaatgtttcacacttgagttctcaatcatgcttgccaattcttctctctaaaagcca |
3869 |
T |
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| Q |
216 |
aaggatatactaatttgaaatacacctgctttgacgcgttttcacaaatatttgttgtt |
274 |
Q |
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| T |
3870 |
aaggatatactaatttgaaatacacctgcacgaacgcgttctcacatatttttgttgtt |
3928 |
T |
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