View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1775_low_1 (Length: 1522)
Name: NF1775_low_1
Description: NF1775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1775_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 890; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 890; E-Value: 0
Query Start/End: Original strand, 29 - 1234
Target Start/End: Original strand, 39444100 - 39445292
Alignment:
| Q |
29 |
ccaaaatattattcaaatagcatacctcatttcataagtgcgcacatatgtccaatttatcatgtactg------ccatcgatcgccttatatactatac |
122 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
39444100 |
ccaaaatattcttcaaatagcatacctcatttcataagtgcgcacatatgtccaatttatcatgtactgatgctgccatcgatcgtcttataaactatac |
39444199 |
T |
|
| Q |
123 |
tagaagcagaaccaaacatcactcctccttcctaagccttcatattatcagcatctgttaccatcatcagttaaaagacatcttatactttccctcgaaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
39444200 |
tagaagcagaaccaaacatcactcctccatcctaagccttcatattatcagcatctgttaccatcatcagttaaaaaatatcttaaactttccctcgaaa |
39444299 |
T |
|
| Q |
223 |
gagttaatgaataatcaaacttccgcaaaaatagatttgtttggtaatgttttcttttgcataagcttatagtcttttaatactaataccttaaaagcgn |
322 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39444300 |
gagttaacgaataatcaaacttccgctaaaatagatttgtttggtattgttttcttttgcataagcttatagtcttttaatactactaccttaaaagcgt |
39444399 |
T |
|
| Q |
323 |
nnnnnn-aagctacatcaagtgaatcatggaagactgtgtgtttggactacatcaagtgaatcttctcttatctttgctgtatgagcaattctagggata |
421 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39444400 |
tttttgtaagctacatcaagtgaatcatggaagattgtgtgtttggactacatcaagtgaatcttctcttatctttgctgtatgagcaattctaggaata |
39444499 |
T |
|
| Q |
422 |
tttttatttagtccactcttaaaatggatttagcaagttgtatattttaacaagcaatgatgtcttccacttataaacacatttccattatactttgcat |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39444500 |
tttttatttagtccactcttaaaatggatttagcaagttgtatattttaacaagcgatgatgtcttccactt-----cacatttccattatactttgcat |
39444594 |
T |
|
| Q |
522 |
agtgcaaattcaaactggagaagacaannnnnnnnnnnnnnnncaaattagctgctatgtttactatt-aaacttctgatttacgtgggaattttctttt |
620 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
39444595 |
agtgcaaattcaaactagagaagacaattattttttcctttttcaaattagctgctatgtttactatttaaacttctgatttacgtgggatttttctttt |
39444694 |
T |
|
| Q |
621 |
aaactcagcacacaagggagcacacaattcgcggcacaaagaagcatatcttaagagaagattatgaggaaaactagttattaattataaactcgcacaa |
720 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
39444695 |
aaactcagc----------gcacacaattcgcagcacaaagaagcatagctta-gagaagattatgaggaaaacgagttatta----taaactcgcacaa |
39444779 |
T |
|
| Q |
721 |
ctgttcatgcatcttgaaagtcctcctaccaatagtatattgaattttgtatcttgaaacttgctcatatataatcttttgatttgatgcacaattcagg |
820 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39444780 |
ctgttgatgcatcttgaaagtcctcctaccaatagtatattgaattttgcatcttgaaacttgctcatatataatcttttgatttgatgcacaattcagg |
39444879 |
T |
|
| Q |
821 |
atcggatgttcaggtttttctctctctcattactttagatctggtattcttcctaaaaggaaaggctctttctatattcatagagattttatcatgaatt |
920 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39444880 |
atcggatgttcaggttttt-tctctctcattactttagatctggtcttcttcctaaaaggaaaggctctttctatattcatagagattttatcatgaatt |
39444978 |
T |
|
| Q |
921 |
tccccagggccatgttgaattaacaaaccagggccatctaattcaatgtgtgatagtgaacgggataaacgtaattagaggtgtaagttagggaacagaa |
1020 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39444979 |
tccccagggccatgttgaattaacaaaccagggccatctaattcaatgtgtgatagtgaacgggataaacgtaattggaggtgtaagttagggaacagaa |
39445078 |
T |
|
| Q |
1021 |
aaatcataattgcacatgtatccttttaatcatgttttgaagatgaatagggaaattgattttggcgtattagggcttcttataacaatacttttttgat |
1120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
39445079 |
aaatcataattgcacatgtagccttttaatcatgttttgaagatgaatagggaaattgattttggcggattagggcttcttataacaatactttttttat |
39445178 |
T |
|
| Q |
1121 |
tttgaagttttgttagctgtggcattacatccattgttgttgccgcaaagagtgatgaaaccaaatacatctgctaaagaaaaatttcaagaaaattata |
1220 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
39445179 |
tttgaaattttgttagcagtggcattacatccattgttgttgccgcaaagagtgatgaaaccaaatacagcacctaaagaaaaatttcaagaaaattata |
39445278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 2e-99
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 39466485 - 39466719
Alignment:
| Q |
19 |
ataagttgtcccaaaatattattcaaatagcatacctcatttcataagtgcgcacatatgtccaatttatcatgtact------gccatcgatcgcctta |
112 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
39466485 |
ataagttgtcc-aaaatattcttcaaatagcatacctcatttgataagtgcgcacatatgtccaatttatcatgtactaatgctgccatcgatcgtctta |
39466583 |
T |
|
| Q |
113 |
tatactatactagaagcagaaccaaacatcactcctccttcctaagccttcatattatcagcatctgttaccatcatcagttaaaagacatcttatactt |
212 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39466584 |
taaactatactagaggcagaaccaaacatcactcctccttcctaagccttcatattatcagcatctgttaccatcatcagttaaaagacatcttatactt |
39466683 |
T |
|
| Q |
213 |
tccctcgaaagagttaatgaataatcaaacttccgc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
39466684 |
tccctcgaaagagttaatgaataatcaaacttccgc |
39466719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 1229 - 1507
Target Start/End: Original strand, 39446083 - 39446352
Alignment:
| Q |
1229 |
atttttctatatactggaggattgaattaaattaaatagaacttgacattggaaataaatctaacaaacatttgctaaggagagattttttattattann |
1328 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || | |
|
|
| T |
39446083 |
atttttctatatattggaggattgaattaaattaaatagaacttgacattggaaataaatctaacaaacatttgttaaggagagattttttttttct--- |
39446179 |
T |
|
| Q |
1329 |
nnnnnnnnnngtatttaccctctagtttcaacgagaagggctctcgtaatcctgaattcggttgggagataagtaaaatttgaccaaaaaatatttcact |
1428 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| |||| ||||||| |
|
|
| T |
39446180 |
------ttttgtatttaccctctggtttcaacgagaagggctctcgtaatcctgaattcggttgggagagaaataaaatttggccaacaaatgtttcact |
39446273 |
T |
|
| Q |
1429 |
taagaattgaacccaagttctcctaaaaaattcgttattggtggagttcatcaacaattgagctcaaatgtttggttat |
1507 |
Q |
| |
|
| ||||| ||| |||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39446274 |
ttagaatcgaatccaaattctcctaaaaaatttgttatcggtggagttcatcaacaattgaggtcaaatgtttggttat |
39446352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 144; E-Value: 5e-75
Query Start/End: Original strand, 250 - 547
Target Start/End: Original strand, 39466745 - 39467023
Alignment:
| Q |
250 |
aaaatagatttgtttggtaatgttttcttttgcataagcttatagtcttttaatactaataccttaaaagcgnnnnnnn-----aagctacatcaagtga |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
39466745 |
aaaatagatttgtttggtaatgttttcttttgcataagcttatagtcttttaatactactaccttaaaagcgttttttttttataagctacatcaagtga |
39466844 |
T |
|
| Q |
345 |
atcatggaagactgtgtgtttggactacatcaagtgaatcttctcttatctttgctgtatgagcaattctagggatatttttatttagtccactcttaaa |
444 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39466845 |
atcatggaagattgtgtgtttggactacatcaagtgaatcttctcttatctttgctgtatgagcaattccagggatatttttattta------------- |
39466931 |
T |
|
| Q |
445 |
atggatttagcaagttgtatattttaacaagcaatgatgtcttccacttataaacacatttccattatactttgcatagtgcaaattcaaactggagaag |
544 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| |||||||||| | ||||| |||||| |
|
|
| T |
39466932 |
---------gcaagttgtatattttaacaagcgatgatgtctt--acatataaacacatttccattatactttgtatagtgcaaactaaaactagagaag |
39467020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 565 - 750
Target Start/End: Original strand, 39467193 - 39467362
Alignment:
| Q |
565 |
caaattagctgctatgtttactatt-aaacttctgatttacgtgggaattttcttttaaactcagcacacaagggagcacacaattcgcggcacaaagaa |
663 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39467193 |
caaattagctgctatgtttactatttaaacttctgatttacgtgggaattttcttttaaactcagcacacaa------------ttcgcggcacaaagaa |
39467280 |
T |
|
| Q |
664 |
gcatatcttaagagaagattatgaggaaaactagttattaattataaactcgcacaactgttcatgcatcttgaaagtcctcctacc |
750 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39467281 |
gcataactta-gagaagattatgaggaaaacaagttatta----taaactcgcacaactgttcatgaatcttgaaagtcctcctacc |
39467362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1448 - 1507
Target Start/End: Original strand, 39467630 - 39467689
Alignment:
| Q |
1448 |
ctcctaaaaaattcgttattggtggagttcatcaacaattgagctcaaatgtttggttat |
1507 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
39467630 |
ctcctaaaaaaatcgtccttggtggagttcatcaacaattaatctcaaatgtttggttat |
39467689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 1152 - 1311
Target Start/End: Original strand, 35314772 - 35314931
Alignment:
| Q |
1152 |
cattgttgttgccgcaaagagtgatgaaaccaaatacatctgctaaagaaaaatttcaagaaaattatatcatcaacatttttctatatactggaggatt |
1251 |
Q |
| |
|
|||| |||||||| || ||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||| || ||| | ||| ||| |
|
|
| T |
35314772 |
cattattgttgccacatagagtgatgaaactaaatacagctgctaaagaaaaattcaaagaaaattatattatcaacattttt-taaatattagagaatt |
35314870 |
T |
|
| Q |
1252 |
ga-attaaattaaatagaacttgacattggaaataaatctaacaaacatttgctaaggaga |
1311 |
Q |
| |
|
|| |||||||||||||||| || ||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
35314871 |
gatattaaattaaatagaattttacattggcgataaatctaacaaacatttattaaggaga |
35314931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 1054 - 1302
Target Start/End: Original strand, 35315621 - 35315858
Alignment:
| Q |
1054 |
gttttgaagatgaatagggaaattgattttggcgtattagggcttcttataacaatacttttttgattttgaagttttgttagctgtggcattacatcca |
1153 |
Q |
| |
|
||||| ||||| |||||||| ||| ||||||| | |||||| ||||||||||||| ||| || || |||||| |||||||||| | ||| ||| || |
|
|
| T |
35315621 |
gtttttaagataaatagggagattcattttggagggttagggtttcttataacaatgcttgttcgactttgaaattttgttagcaccgatattgcatgca |
35315720 |
T |
|
| Q |
1154 |
ttgttgttgccgcaaagagtgatgaaaccaaatacatctgctaaagaaaaatttcaagaaaattatatcatcaacatttttctatatactggaggattga |
1253 |
Q |
| |
|
|||||||||| | ||||| | |||||||||||| | ||||||||||||| ||||| |||||||||||| || ||| ||||||||||| |
|
|
| T |
35315721 |
ttgttgttgctactaagagcggtgaaaccaaatatagttgctaaagaaaaa------------tatattatcaacatttttttaaatattggaggattga |
35315808 |
T |
|
| Q |
1254 |
-attaaattaaatagaacttgacattggaaataaatctaacaaacatttg |
1302 |
Q |
| |
|
|||||||||||||||| |||||| | ||||| ||| ||||||||||| |
|
|
| T |
35315809 |
tattaaattaaatagaatttgacactaacaataactcttacaaacatttg |
35315858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University