View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1775_low_2 (Length: 322)

Name: NF1775_low_2
Description: NF1775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1775_low_2
NF1775_low_2
[»] chr3 (23 HSPs)
chr3 (18-293)||(10361600-10361875)
chr3 (18-296)||(10582605-10582884)
chr3 (18-296)||(10431837-10432118)
chr3 (18-215)||(10262693-10262893)
chr3 (18-294)||(10090786-10091065)
chr3 (18-296)||(11779778-11780056)
chr3 (18-294)||(10197668-10197947)
chr3 (17-296)||(9840852-9841131)
chr3 (161-294)||(13853259-13853392)
chr3 (19-296)||(9851735-9852012)
chr3 (18-293)||(10519480-10519755)
chr3 (18-296)||(10128920-10129198)
chr3 (54-296)||(11771265-11771507)
chr3 (18-293)||(10033995-10034273)
chr3 (62-219)||(10502622-10502779)
chr3 (18-136)||(10665521-10665633)
chr3 (18-293)||(10373641-10373919)
chr3 (226-293)||(10665669-10665736)
chr3 (19-134)||(10186376-10186491)
chr3 (19-134)||(10079406-10079521)
chr3 (62-107)||(10530686-10530731)
chr3 (251-294)||(10262929-10262972)
chr3 (62-107)||(10679477-10679522)
[»] scaffold0083 (1 HSPs)
scaffold0083 (19-294)||(55400-55675)
[»] chr2 (1 HSPs)
chr2 (18-294)||(26908883-26909159)
[»] chr8 (3 HSPs)
chr8 (42-107)||(44955662-44955727)
chr8 (30-136)||(11487042-11487148)
chr8 (161-266)||(11487167-11487272)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 10361875 - 10361600
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccactt 117  Q
    |||||||| ||||||| |||| ||||||| ||  | |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  10361875 aattgtccagaactaaggggacatttgccgagcaaccttccttgcatagaagaaattgtaatacaaggttgttctcatctattggaaacagagcccactt 10361776  T
Q  118 tgcattggttgtcgtcaatnnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaaca 217  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10361775 tgcattggttgtcgtcaataaaaaattttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagcgattctccatgtatgatgcaaca 10361676  T
Q  218 tgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttg 293  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  10361675 tgcagtgattcaaaagtgcgctatgctgtcatctgtgccaaaattgattctgagaagcacttgtcttacactcttg 10361600  T

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Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 10582605 - 10582884
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccactt 117  Q
    ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  10582605 aattgtcccaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgaaatagaaggttgtgttcatctattggaaacagagcccactt 10582704  T
Q  118 tgcattggttgtcgtcaat-nnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaac 216  Q
    |||||||||||||||||||         |||||||||||||||||| || |||||||||||||| ||| |||| |||||||||||| ||||||||||||     
T  10582705 tgcattggttgtcgtcaataaaaaaaaattaagattgatgggcttggtgaaaggacccaattgttattgcttgagagtgattctccgtgtatgatgcaag 10582804  T
Q  217 atgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttgaga 296  Q
    |||||||||| | ||| |||| ||  || | |  |||||||||||||||| |||||||||||||||||||||||||||||    
T  10582805 atgcagtgatggcaaactgcgttaacctattagctgtgccaaaattgattctgagaagcacttgtcttacacacttgaga 10582884  T

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Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 10432118 - 10431837
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcc---ca 114  Q
    |||||||| ||||||| |||| | ||||||||  | ||||||||||||||||||||||| |||  |||||||||||| ||| |||||||||||||   ||    
T  10432118 aattgtcctgaactaaggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactactggaaacagagccaaaca 10432019  T
Q  115 ctttgcattggttgtcgtcaatnnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgca 214  Q
    || |||||||||||||||||||        |||| ||  |||||||||| ||||||||| | |||||||| |||| |||||||||||| |||||||||||    
T  10432018 ctatgcattggttgtcgtcaataaagaaagttaatatcaatgggcttgacggaaggaccaatttgtcattgcttgagagtgattctccgtgtatgatgca 10431919  T
Q  215 acatgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttgaga 296  Q
    ||||| |||||||||||| || | || ||| | |  |||||||||||||||| |||||||||||||||||||||||||||||    
T  10431918 acatgtagtgattgaaaactgtgttaagctattagttgtgccaaaattgattctgagaagcacttgtcttacacacttgaga 10431837  T

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Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 10262693 - 10262893
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcc---ca 114  Q
    |||||||| ||||||| || | ||||||||||  | |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||   ||    
T  10262693 aattgtccagaactaagggaacatttgcctagcaaacttccttgcatagaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaaca 10262792  T
Q  115 ctttgcattggttgtcgtcaatnnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgca 214  Q
    |||||||||||||||||||| |        |||| || |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||    
T  10262793 ctttgcattggttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgca 10262892  T
Q  215 a 215  Q
    |    
T  10262893 a 10262893  T

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Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 10090786 - 10091065
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcc---ca 114  Q
    |||||||  ||||||| |||| ||||||||||  | |||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||   ||    
T  10090786 aattgtcgagaactaaggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaaca 10090885  T
Q  115 ctttgcattggttgtcgtcaatnnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgca 214  Q
    |||||||||||||||||||| |        |||| || |||||| ||| || |||||||||||||||||| |||| |||||||||||||||||||||| |    
T  10090886 ctttgcattggttgtcgtcagtaaagaaaattaatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccatgtatgatgga 10090985  T
Q  215 acatgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttga 294  Q
    | ||| |||||||  |||||| |||| ||| | |  | |||||||| |||||   |||||||||||||||  ||||||||    
T  10090986 agatgtagtgattcgaaagtgtgctaagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttga 10091065  T

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Target: chr3; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 11780056 - 11779778
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccactt 117  Q
    |||||||| ||||||| |||| |||||||||   | ||||||||||| |||||||||| |||| |||||||||||||||||||||||| |    | ||||    
T  11780056 aattgtcctgaactaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactt 11779957  T
Q  118 tgcattggttgtcgtcaatnnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaaca 217  Q
    |||||||||||||||||||        | || ||  | || |||| || || ||| ||||||||||| ||||  |||||||||| || ||||||||||||    
T  11779956 tgcattggttgtcgtcaataaaagaaatgaatatcaaaggacttggtgaaaagacacaattgtcattgcttgatagtgattctctatctatgatgcaaca 11779857  T
Q  218 tgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttgaga 296  Q
    || ||||||||||||||| |||  ||| |||  |||||||||||||||||||||||||| |||||||||| ||||||||    
T  11779856 tgtagtgattgaaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcatttgtcttacatacttgaga 11779778  T

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Target: chr3; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 10197668 - 10197947
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcc---ca 114  Q
    |||||||  ||||||| |||| ||||||||||  | |||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||   ||    
T  10197668 aattgtcgagaactaaggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaaca 10197767  T
Q  115 ctttgcattggttgtcgtcaatnnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgca 214  Q
    |||||||||||||||||||| |        |||| || |||||| ||| || |||||||||||||||||| |||| |||||||||||| ||||||||| |    
T  10197768 ctttgcattggttgtcgtcagtaaagaaaattaatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgga 10197867  T
Q  215 acatgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttga 294  Q
    | ||| |||||||  |||||| |||| ||| | |  | |||||||| |||||   |||||||||||||||  ||||||||    
T  10197868 agatgtagtgattcgaaagtgtgctaagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttga 10197947  T

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Target: chr3; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 9840852 - 9841131
Alignment:
Q  17 caattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccact 116  Q
    ||||||||| ||||||| |||||||||||| |   | ||||||| ||||||| |||||| ||||  |||||||||||||||||||||||||    | |||    
T  9840852 caattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctact 9840951  T
Q  117 ttgcattggttgtcgtcaatnnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaac 216  Q
     ||||||||||||| |||||        | || ||  ||||||||| || |||  ||||||||||||| |||| |||||||||||||||||||||||||     
T  9840952 ctgcattggttgtcttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccatgtatgatgcaag 9841051  T
Q  217 atgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttgaga 296  Q
    ||| ||||||||||||||| | ||  || | |  ||| |||||||||||| |||||||||||||||||||||||||||||    
T  9841052 atgtagtgattgaaaagtgtgttaaactattagttgttccaaaattgattctgagaagcacttgtcttacacacttgaga 9841131  T

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Target: chr3; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 161 - 294
Target Start/End: Complemental strand, 13853392 - 13853259
Alignment:
Q  161 tgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaacatgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaa 260  Q
    ||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||||| | ||||||||||| | ||||||||    
T  13853392 tgatggaaggacccaattgtcatttcttgggagcgattctccttgcacgatgcaacatgcagtgattgaaaagtgtgttatgctgtcatctatgccaaaa 13853293  T
Q  261 ttgattttgagaagcacttgtcttacacacttga 294  Q
    ||||||||||||||||||| ||||  ||||||||    
T  13853292 ttgattttgagaagcacttttcttcaacacttga 13853259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 9851735 - 9852012
Alignment:
Q  19 attgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccacttt 118  Q
    |||||||  |||||| |||||||||||| |   | ||||||| |||||||||||||| ||||  |||||||||||||||||||||||||    | ||| |    
T  9851735 attgtccaaaactaaggggatatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct 9851834  T
Q  119 gcattggttgtcgtcaatnnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaacat 218  Q
    || ||||||||| |||||        | || ||  ||||||||| || |||  ||||||||||||| |||| |||||||||||| |||||||||||| ||    
T  9851835 gcgttggttgtcttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaagat 9851934  T
Q  219 gcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttgaga 296  Q
    | || |||||||||||| | || ||| | |  |||||||||||||||| |||||||||||||||||||||||||||||    
T  9851935 gtagagattgaaaagtgtgttaagctattagctgtgccaaaattgattatgagaagcacttgtcttacacacttgaga 9852012  T

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Target: chr3; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 10519480 - 10519755
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccactt 117  Q
    |||||||| ||||||| |||| ||||||| |   | ||||||| |||||||||||||| |||| ||||||||  ||||||||||||||||    | ||||    
T  10519480 aattgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaataaaaggttgtgttcatctattggaaacaccatctactt 10519579  T
Q  118 tgcattggttgtcgtcaatnnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaaca 217  Q
    ||||||||||||| |||||        | || ||  ||||||||| || |||  ||||||||||||| |||| |||||||||||| |||||||||||| |    
T  10519580 tgcattggttgtcttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccttgtatgatgcaaga 10519679  T
Q  218 tgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttg 293  Q
    || || |||| ||||||| | || ||| | |  |||||||||||||||| ||| ||||||||||||||||||||||    
T  10519680 tgtagagattaaaaagtgtgttaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttg 10519755  T

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Target: chr3; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 10128920 - 10129198
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccactt 117  Q
    |||||||| ||||||| |||| ||||||| |   | ||||||| |||||||||||||| ||||  |||||||||||||||||||||||||    | |||     
T  10128920 aattgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactc 10129019  T
Q  118 tgcattggttgtcgtcaatnnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaaca 217  Q
    ||||||||||||| |||||        | || ||  ||||||||| || |||  ||||||||||||| |||| |||||||||||| ||||||||||||||    
T  10129020 tgcattggttgtcttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaaca 10129119  T
Q  218 tgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttgaga 296  Q
    || || |||| | || ||  ||| ||| | |  |||||||||||||||| ||| |||||||||||||||||||||||||    
T  10129120 tgtagcgattcacaactgttctaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgaga 10129198  T

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Target: chr3; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 54 - 296
Target Start/End: Original strand, 11771265 - 11771507
Alignment:
Q  54 cttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccactttgcattggttgtcgtcaatnnnnnnntttaagattg 153  Q
    ||||||||||| |||||||||| |||  |||||||||||||||||||||||| |    | |||||||||||||||||||||||        | || ||      
T  11771265 cttccttgcatcgaagaaattgtaatcaaaggttgttctcatctattggaaaaaccatctactttgcattggttgtcgtcaataaaagaaatgaatatca 11771364  T
Q  154 atgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaacatgcagtgattgaaaagtgcgctatgctgtcatatgt 253  Q
    | || |||| || || ||| || |||||||| ||||  |||||||||| || |||||||||||||| ||||||||||||||  | |  ||| |||  |||    
T  11771365 acggccttggtgaaaagacacagttgtcattgcttgatagtgattctctatctatgatgcaacatgtagtgattgaaaagtatgttgagctatcagttgt 11771464  T
Q  254 gccaaaattgattttgagaagcacttgtcttacacacttgaga 296  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  11771465 gccaaaattgattttgagaagcacttgtcttacatacttgaga 11771507  T

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Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 10033995 - 10034273
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccactt 117  Q
    |||||||| ||||||| |||| ||||||| |   | ||||||| ||||||| |||||| ||||  |||||||||||||||||||||||||    | |||     
T  10033995 aattgtccagaactaaggggacatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactc 10034094  T
Q  118 tgcattggttgtcgtcaatnnnnnnntttaagattgatgggcttga---tggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgca 214  Q
    ||||||||||||| |||||        | || ||  ||||||||||   || |||  ||||| ||||||| |||| |||||||||||| |||||||||||    
T  10034095 tgcattggttgtcttcaataaaaaaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgca 10034194  T
Q  215 acatgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttg 293  Q
    ||||| || |||| | || ||  ||| ||| | |  |||||||||||||||||||||||||||||||||||||||||||    
T  10034195 acatgtagcgattcacaactgttctaagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttg 10034273  T

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Target: chr3; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 10502622 - 10502779
Alignment:
Q  62 catagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccactttgcattggttgtcgtcaatnnnnnnntttaagattgatgggctt 161  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||  ||| |||||||||||| |||||||| |         ||| ||  ||||||||    
T  10502622 catagaagaaattgtaatagaaggttgtgctcatctattggaaacaccgcctactttgcattggctgtcgtcattgaaaaaaggtaatatcaatgggctt 10502721  T
Q  162 gatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaacatg 219  Q
    | || || ||| ||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  10502722 ggtgaaaagactcaattatcattgcttgggagtgactctccatgtatgatgcaacatg 10502779  T

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Target: chr3; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 10665521 - 10665633
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccactt 117  Q
    ||||||||  ||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||      || |||||| |||||||  |||||||    
T  10665521 aattgtccaaaactaaagggacatttgcctagccatcttccttgtatagaagaaattgaaattgaagg------tcgtctattagaaacaggtcccactt 10665614  T
Q  118 tgcattggttgtcgtcaat 136  Q
    |||||||||||||||||||    
T  10665615 tgcattggttgtcgtcaat 10665633  T

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Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 10373919 - 10373641
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccactt 117  Q
    |||||||| ||||||| |||| ||||||| |   | ||||||| |||||||||||||| ||||  |||||||||||||||||||||||||    | |||     
T  10373919 aattgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactc 10373820  T
Q  118 tgcattggttgtcgtcaatnnnnnnntttaagattgatgggcttga---tggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgca 214  Q
    ||||||||||||| |||||        | || ||  ||||||||||   || |||  ||||| ||||||| |||| |||||||||||| |||||||||||    
T  10373819 tgcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgca 10373720  T
Q  215 acatgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttg 293  Q
    | | | ||| |||    | || | || | | | |  ||| |||||||||||| ||||||||||||||||||||||||||    
T  10373719 agaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttg 10373641  T

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Target: chr3; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 10665669 - 10665736
Alignment:
Q  226 ttgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttg 293  Q
    |||||||||| | |||||||||||   |||||||||||||| ||||||||||||||||||||||||||    
T  10665669 ttgaaaagtgtgttatgctgtcatccatgccaaaattgattatgagaagcacttgtcttacacacttg 10665736  T

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Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 10186376 - 10186491
Alignment:
Q  19 attgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccacttt 118  Q
    ||||||| |||||||||||  ||||||||||| | |||||||||||||||||||||   ||| |||||||| |  |||||||||| |||   || |||||    
T  10186376 attgtcctgaactaaaggggcatttgcctagtgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggatacaccacctacttt 10186475  T
Q  119 gcattggttgtcgtca 134  Q
    | |||||||| |||||    
T  10186476 ggattggttgccgtca 10186491  T

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Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 10079406 - 10079521
Alignment:
Q  19 attgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccacttt 118  Q
    ||||||| |||||||||||  |||| |||||  | |||||||||||||||||||||   ||| |||||||| |  ||||||||||||||   || |||||    
T  10079406 attgtcctgaactaaaggggcattttcctagcgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggaaacaccacctacttt 10079505  T
Q  119 gcattggttgtcgtca 134  Q
    | |||||||| |||||    
T  10079506 ggattggttgccgtca 10079521  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 10530686 - 10530731
Alignment:
Q  62 catagaagaaattgaaatagaaggttgttctcatctattggaaaca 107  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||    
T  10530686 catagaagaaattcaaatagaaggttgtgctcgtctattggaaaca 10530731  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 10262929 - 10262972
Alignment:
Q  251 tgtgccaaaattgattttgagaagcacttgtcttacacacttga 294  Q
    ||| |||||||||||| |||||||||||||||| ||||||||||    
T  10262929 tgttccaaaattgattctgagaagcacttgtctaacacacttga 10262972  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 10679477 - 10679522
Alignment:
Q  62 catagaagaaattgaaatagaaggttgttctcatctattggaaaca 107  Q
    ||||||||||||| |||||||||||| | ||| |||||||||||||    
T  10679477 catagaagaaattcaaatagaaggttatgctcgtctattggaaaca 10679522  T

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Target: scaffold0083 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 55675 - 55400
Alignment:
Q  19 attgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccacttt 118  Q
    ||||||| ||||||| |||| ||||||| |   | ||||||| |||||||||||||| ||||  |||||||||||||||||||||||||    | ||| |    
T  55675 attgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct 55576  T
Q  119 gcattggttgtcgtcaatnnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaacat 218  Q
    |||||||||||| |||||        | || ||  ||||||||| || |||  ||||||||||||| |||| |||||||||||| |||||||||||||||    
T  55575 gcattggttgtcttcaataaaaataatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaacat 55476  T
Q  219 gcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttga 294  Q
    | || |||| | || ||  ||| ||| | |  |||||||||||||||| ||| |||||||||||||||||||||||    
T  55475 gtagcgattcacaactgttctaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttga 55400  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 26908883 - 26909159
Alignment:
Q  18 aattgtcccgaactaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccactt 117  Q
    ||||||||  ||||||| |||  |||||||||  | |||||||||||||||||||||| |||| ||||||| | ||||||||||||||||    | ||||    
T  26908883 aattgtccaaaactaaaaggacttttgcctagcaaccttccttgcatagaagaaattgtaataaaaggttgctatcatctattggaaacaccatctactt 26908982  T
Q  118 tgcattggttgtcgtcaatnnnnnnntttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaaca 217  Q
    | |||||| ||||||| ||        |||| ||  ||||||||| |  |||||||  ||||||||| |||  |||||||||||| |||||||||||| |    
T  26908983 tacattgggtgtcgtccataccgaaaattaatatccatgggcttggtaaaaggaccatattgtcattgcttaagagtgattctccctgtatgatgcaaga 26909082  T
Q  218 tgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaattgattttgagaagcacttgtcttacacacttga 294  Q
    || ||||||| |||| || | |  ||| | |  | |||||||||||||| |||||||||| ||||||  ||||||||    
T  26909083 tgtagtgattcaaaattgtgttgggctattaggtttgccaaaattgattctgagaagcacatgtcttcaacacttga 26909159  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 44955727 - 44955662
Alignment:
Q  42 ttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaaca 107  Q
    ||||| ||||||||| ||| ||||||||||||||||||| ||| |||| |||||||||||||||||    
T  44955727 ttgccaagtcatctttcttccatagaagaaattgaaataaaagattgtgctcatctattggaaaca 44955662  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 11487042 - 11487148
Alignment:
Q  30 ctaaagggatatttgcctagtcatcttccttgcatagaagaaattgaaatagaaggttgttctcatctattggaaacagagcccactttgcattggttgt 129  Q
    |||| |||| |||||||||| || ||||||||||||||| ||||| | |||  ||||||| | ||||| |||||||||    |  |||||||||||||||    
T  11487042 ctaaggggacatttgcctagccaccttccttgcatagaaaaaattaatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgt 11487141  T
Q  130 cgtcaat 136  Q
    |||||||    
T  11487142 cgtcaat 11487148  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 11487167 - 11487272
Alignment:
Q  161 tgatggaaggacccaattgtcatttcttgggagtgattctccatgtatgatgcaacatgcagtgattgaaaagtgcgctatgctgtcatatgtgccaaaa 260  Q
    |||||||| |||| || |||| || ||||||||||| ||||| ||||||| ||| |||  || |||||||||||| |  | | |||||| ||||||||||    
T  11487167 tgatggaatgaccgaactgtctttacttgggagtgactctccgtgtatgaggcagcatatagcgattgaaaagtgtgtcacgttgtcatctgtgccaaaa 11487266  T
Q  261 ttgatt 266  Q
    ||||||    
T  11487267 ttgatt 11487272  T

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