View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1775_low_5 (Length: 246)
Name: NF1775_low_5
Description: NF1775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1775_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 40235380 - 40235162
Alignment:
| Q |
23 |
gatcgtctccttcaaacaccggcaacttaaccttctttctggaaagtcgcgattcctgaaattggttggcggaagattcactcgtctgagtaaactccgg |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40235380 |
gatcgtctccttcaaacaccggcaacttaaccttctttccggaaagtcgcgattcctgaaattggttggcggaagattcactcgtctgagtaaactccgg |
40235281 |
T |
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| Q |
123 |
tgatggtcgcttctctagctgtttgcttaattcactcaacacagcgctctgttgttgcattgtaacactctgttgttgcatctgttgcgagagtaccaac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40235280 |
tgatggtcgcttctctagctgtttgcttaattcactcaacacagcgctctgttgttgcattgtaacactctgttgttgcatctgttgcgagagtaccaac |
40235181 |
T |
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| Q |
223 |
aacgctgacttcatctcac |
241 |
Q |
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||||||||||||||||||| |
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| T |
40235180 |
aacgctgacttcatctcac |
40235162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 46440200 - 46440418
Alignment:
| Q |
23 |
gatcgtctccttcaaacaccggcaacttaaccttctttctggaaagtcgcgattcctgaaattggttggcggaagattcactcgtctgagtaaactccgg |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46440200 |
gatcgtctccttcaaacaccggcaacttaaccttctttccggaaagtcgcgattcctgaaattggttggcggaagattcactcgtctgagtaaactccgg |
46440299 |
T |
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| Q |
123 |
tgatggtcgcttctctagctgtttgcttaattcactcaacacagcgctctgttgttgcattgtaacactctgttgttgcatctgttgcgagagtaccaac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46440300 |
tgatggtcgcttctctagctgtttgcttaattcactcaacacagcgctctgttgttgcattgtaacactctgttgttgcatctgttgcgagagtaccaac |
46440399 |
T |
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| Q |
223 |
aacgctgacttcatctcac |
241 |
Q |
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||||||||||||||||||| |
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| T |
46440400 |
aacgctgacttcatctcac |
46440418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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