View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17760_high_12 (Length: 275)
Name: NF17760_high_12
Description: NF17760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17760_high_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 39471392 - 39471127
Alignment:
| Q |
11 |
cacagaccacacaccacacatattattgaataataaataattccaacaagataataacaacaatctagttttacannnnnnnnnnnnnnnn-cagatagt |
109 |
Q |
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| T |
39471392 |
cacacaccacacaccacacatattattgaataataaataattccaacaagataataacaacaatccagttttacatttttttttccttttttcagatagt |
39471293 |
T |
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| Q |
110 |
ttttacatattcttgtacaccacaaaaacttgcacggtccatatataaggtagtagtaaatagccttcaccatccatcaattctcccataaataatataa |
209 |
Q |
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| T |
39471292 |
ttttacatattcttgtacaccacaaaaacttgcacggtccatatataaggtagtagtaaatagccttcaccatccatcaattctcccataaataatataa |
39471193 |
T |
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| Q |
210 |
agacaaacatttcaatctcatgccataaagttctcatatcatgccatcacgcaaagccatgccatc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
39471192 |
agacaaacatttcaatctcatgccataaagttctcatatcatgccatcccgcaaagccatgacatc |
39471127 |
T |
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