View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17760_high_7 (Length: 354)
Name: NF17760_high_7
Description: NF17760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17760_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 30935751 - 30935428
Alignment:
| Q |
17 |
agtgaagacttttaaaaacgattgaactcaaattgtaaatgagttccagttaagaacgaatagtttgagagctgaattcgaattcaggttaattaaatta |
116 |
Q |
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| T |
30935751 |
agtgaagacttttaaaaacgattgaactcaaattgtaaacgagttccagttaagaacgaatagtttgagagctgaattcgaattctggttaa----atta |
30935656 |
T |
|
| Q |
117 |
atctttagttagactttacttaactcctaattgaactctgaattaccaagacatcattctcttggaaacaatagtttaagacaatnnnnnnngacttgat |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30935655 |
atctttagttagactttacttaactcctaatcgaactctgaattaccaagacatcattctcttggaaacaatagtttaagacaataaaaaaagacttgat |
30935556 |
T |
|
| Q |
217 |
aaaactcaagtaaacatacatagaaatattgaaattctaatcagccnnnnnnnccttcaactctgcatcacagaggacttgcaatgaccctatgaagttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30935555 |
aaaactcaagtaaacatacatagaaatattgaaattctaatcagcctttttttccttcaactctgcatcacagaggacttgcaatgaccctatgaagttg |
30935456 |
T |
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| Q |
317 |
cggcaatggggtgggatctctgtctgtg |
344 |
Q |
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| T |
30935455 |
cggcaatggggtgggatctctgtatgtg |
30935428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 30966176 - 30966039
Alignment:
| Q |
36 |
gattgaactcaaattgtaaatgagttccagttaagaacgaatagtttgagagctgaa-ttcgaattcaggttaattaaattaatctttagttagacttta |
134 |
Q |
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|||||| |||||||||| ||| |||||||||||| || |||| ||||||||| | | ||||| ||| |||||| ||||||| | ||||||||||| |
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| T |
30966176 |
gattgagctcaaattgttaattagttccagttaa-aatgaattgtttgagagttttagttcgatttctggttaa----attaatcactggttagacttta |
30966082 |
T |
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| Q |
135 |
cttaactcctaattgaactctgaattaccaagacatcattctc |
177 |
Q |
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| T |
30966081 |
attaactcctcatcgaactctgaattaccaagacatcattctc |
30966039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 337
Target Start/End: Complemental strand, 30965668 - 30965548
Alignment:
| Q |
215 |
ataaaactcaagtaaacatacatagaaatattgaaattctaatcagccnnnnnnnccttcaactctgcatcacagaggacttgcaatgaccctatgaagt |
314 |
Q |
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||||||| |||||||||||||||||||| |||| |||||||||||||| |||||||||| || |||||||| |||||||||||||||| || |
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| T |
30965668 |
ataaaacacaagtaaacatacatagaaaaattggaattctaatcagccttttttt--gtcaactctgcttcgcagaggacgtgcaatgaccctatgaggt |
30965571 |
T |
|
| Q |
315 |
tgcggcaatggggtgggatctct |
337 |
Q |
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|| || |||| |||| ||||||| |
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| T |
30965570 |
tggggaaatgaggtgagatctct |
30965548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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