View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17760_high_8 (Length: 342)
Name: NF17760_high_8
Description: NF17760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17760_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 13554566 - 13554900
Alignment:
| Q |
1 |
caaaaattgtggctggctctgatggtggatccattgcaaagattacagtgaaataccacaccaaaggtgatgcaactctatctgatgcagtgcgtgatga |
100 |
Q |
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| T |
13554566 |
caaaaattgtggctggctctgatggtggatccattgctaagattacagttaaatatcacaccaaaggtgatgcaactctatctgatgcagtgcgtgatga |
13554665 |
T |
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| Q |
101 |
gactaaggccagaggaactggacttatcaaggccattgagggttacgttttggcaaatcctgattattaaatgaatctacacttggtttaattttggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13554666 |
gactaaggccagaggaactggacttatcaaggccattgagggttacgttttggcaaatcctgattattaaatgaatctacacttggtttaattttggttg |
13554765 |
T |
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| Q |
201 |
tatcgtgtcatgggaataataattgaagtttatgatatggttgtttaattacatgtgtgtggtagtgtcgggttttgagtggtgttttgggtgaatttga |
300 |
Q |
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| T |
13554766 |
tatcgtgtcatgggaataataattgaagtttaagatatggttgtttaattacatgagtgtggtagtgtcgggttttgagtggtgttttgggtgaatttga |
13554865 |
T |
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| Q |
301 |
ttgggtgtttaagttcaaaatctatgtgatgatgt |
335 |
Q |
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| T |
13554866 |
ttgggtgtttaagttcaaaatctatgtgatgatgt |
13554900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 13537712 - 13537876
Alignment:
| Q |
6 |
attgtggctggctctgatggtggatccattgcaaagattacagtgaaataccacaccaaaggtgatgcaactctatctgatgcagtgcgtgatgagacta |
105 |
Q |
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| T |
13537712 |
attgtggctggctctgatggtggatccattgttaagatttcagtgaaataccacaccaaaggtgatgcaactctatctgatgcagtgcgtgatgaaacta |
13537811 |
T |
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| Q |
106 |
aggccagaggaactggacttatcaaggccattgagggttacgttttggcaaatcctgattattaa |
170 |
Q |
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| T |
13537812 |
agaccaaaggaactggacttatcaaggccattgagggatacgttttggcaaaccctaattattaa |
13537876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 13541748 - 13541913
Alignment:
| Q |
1 |
caaaaattgtggctggctctgatggtggatccattgcaaagattacagtgaaataccacaccaaaggtgatgcaactctatctgatgcagtgcgtgatga |
100 |
Q |
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|||| ||||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||||| || || ||||| || |
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| T |
13541748 |
caaatattgtggctggatctgatggtggatccattgttaagatttcagtgaaatatcacaccaaaggtgatgcagttctatctgaagctgtacgtgagga |
13541847 |
T |
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| Q |
101 |
gactaaggccagaggaactggacttatcaaggccattgagggttacgttttggcaaatcctgatta |
166 |
Q |
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| T |
13541848 |
aactaaggccaaaggaactggacttatcaaggccattgagggttatgttttggcaaaccctaatta |
13541913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 13530844 - 13531009
Alignment:
| Q |
1 |
caaaaattgtggctggctctgatggtggatccattgcaaagattacagtgaaataccacaccaaaggtgatgcaactctatctgatgcagtgcgtgatga |
100 |
Q |
| |
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|||| ||||| ||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||||||| ||||| || |
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| T |
13530844 |
caaatattgttgctgggtctgatggtggatccattgttaagatttcagtgaaatatcacaccaaaggtgatgcagttctatctgatgcagtacgtgagga |
13530943 |
T |
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| Q |
101 |
gactaaggccagaggaactggacttatcaaggccattgagggttacgttttggcaaatcctgatta |
166 |
Q |
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| T |
13530944 |
gactaaggccaaaggaactggtcttatcaaggctattgagggctacgtcttggcaaaccctaatta |
13531009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 13485707 - 13485759
Alignment:
| Q |
21 |
gatggtggatccattgcaaagattacagtgaaataccacaccaaaggtgatgc |
73 |
Q |
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| T |
13485707 |
gatggaggatccattgcaaagcttactgtgaaatacttcaccaaaggtgatgc |
13485759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 13492146 - 13492198
Alignment:
| Q |
21 |
gatggtggatccattgcaaagattacagtgaaataccacaccaaaggtgatgc |
73 |
Q |
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| T |
13492146 |
gatggaggatccattgcaaagcttactgtgaaatacttcaccaaaggtgatgc |
13492198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 246
Target Start/End: Original strand, 13537911 - 13537942
Alignment:
| Q |
215 |
aataataattgaagtttatgatatggttgttt |
246 |
Q |
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| T |
13537911 |
aataataattgaagtttatgatatggttgttt |
13537942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 13485813 - 13485857
Alignment:
| Q |
127 |
tcaaggccattgagggttacgttttggcaaatcctgattattaaa |
171 |
Q |
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| T |
13485813 |
tcaaggctcttgaaggttacgttttggcaaatcctgattactaaa |
13485857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 13492252 - 13492296
Alignment:
| Q |
127 |
tcaaggccattgagggttacgttttggcaaatcctgattattaaa |
171 |
Q |
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| T |
13492252 |
tcaaggctcttgaaggttacgttttggcaaatcctgattactaaa |
13492296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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