View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17760_low_1 (Length: 592)
Name: NF17760_low_1
Description: NF17760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17760_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 16 - 575
Target Start/End: Complemental strand, 5453838 - 5453279
Alignment:
| Q |
16 |
ataagcacaatgacacaaaaagctatgaagttaaaacaatatcatatttcacacacaaattggatactcagagtataactctacatcctctgattccacc |
115 |
Q |
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| T |
5453838 |
ataagcacaatgacacaaaaagctatgaagttaaaacaatatcatatttcacacacaaattggatactcagagtataactctacatcctctgattccacc |
5453739 |
T |
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| Q |
116 |
aatttctaaacaatgcagataaaacgaaaattagcaaaatcagaatcaaaccataacagtaataccaattctttaacaagcaaaccctaaaatgctaaat |
215 |
Q |
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| T |
5453738 |
aatttctaaacaatgcagataaaacgaaaattagcaacatcagaatcaaaccataacagtaataccaattatttaacaagcaaaccctaaaatgctaaat |
5453639 |
T |
|
| Q |
216 |
ataaccggtagatcaatcaagactcaaaacagcaactgcgtctacggcggaggaaggagttccgacggaggtgttaccgtcatcagcgagacgagattta |
315 |
Q |
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| T |
5453638 |
ataaccagtagatcaatcaagactcaaaacagcaactgcgtctgcggcggaggaaggagttccgacggaggtgttaccgtcatcagcgagacgagattta |
5453539 |
T |
|
| Q |
316 |
gctttaacagtctcgatcatgcgcttactgatctccttcgagtaaacctcaagaatcgtaacgttatcgttgctagttgaagaggaagcattggcgacgg |
415 |
Q |
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| T |
5453538 |
gctttaacagtctcgatcatgcgcttactgatctccttcgagtaaacctcaagaatcgtaacgttatcgttgctagttgaagaggaagcattggcgacgg |
5453439 |
T |
|
| Q |
416 |
agaaagcttcgtcctcgatctggatagcggcggcggaggcttcgtcagcggacattgtgccgtagcgtttggtgaggactgagggagtggaaagtgtttc |
515 |
Q |
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| T |
5453438 |
agaaagcttcgtcctcgatctggatagcggcggcggaggcttcgtcagcggacattgtgccgtagcgtttggtgaggactgagggagtggaaagtgtttc |
5453339 |
T |
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| Q |
516 |
gatcaaacggtttttgacggcgtcgcgagtgcgttgtgtgggaggccaaatagagtagtt |
575 |
Q |
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| T |
5453338 |
gatcaaacggtttttgacggcgtcgcgagtgcgttgtttgggaggccaaatagagtagtt |
5453279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 563
Target Start/End: Original strand, 47238512 - 47238621
Alignment:
| Q |
454 |
gcttcgtcagcggacattgtgccgtagcgtttggtgaggactgagggagtggaaagtgtttcgatcaaacggtttttgacggcgtcgcgagtgcgttgtg |
553 |
Q |
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| T |
47238512 |
gcttcgtcggagggcaatgtgccgtagcgtttggaaaggacggagggagtggttagggtttcgattaagcgagtgatgacggcgtcgcgggtgcgttgag |
47238611 |
T |
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| Q |
554 |
tgggaggcca |
563 |
Q |
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|||| ||||| |
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| T |
47238612 |
tgggtggcca |
47238621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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