View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17760_low_12 (Length: 278)
Name: NF17760_low_12
Description: NF17760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17760_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 13554589 - 13554342
Alignment:
| Q |
15 |
catcagagccagccacaatttttgtctcgaattcaactttctctagactttcatccaatcctgttcctcctactaagctgtagttgtatccaaagtttgc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13554589 |
catcagagccagccacaatttttgtctcgaattcaactttctctagactttcatccaatcctgttcctcctactaagctatagttgtatccaaagtttgc |
13554490 |
T |
|
| Q |
115 |
ctcatctactgcatctaatttgtgtagcacaaagttggttttgccatctgcaatacaaccattgtaattatttatataattcttttttcgatacaagtaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13554489 |
ctcatctactgcatctaatttgtgtagcacaaagttggttttgccatctgcaatacaaccattataattatttatataattcttttttcgatacaagtaa |
13554390 |
T |
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| Q |
215 |
agtttaactaaaaactctttcatttaaagatcgatttgaactttaccg |
262 |
Q |
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| T |
13554389 |
agtttaactaaaaactctttcatttaaagatcgatttgaactttaccg |
13554342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 13530867 - 13530694
Alignment:
| Q |
15 |
catcagagccagccacaatttttgtctcgaattcaactttctctagactttcatccaatcctgttcctcctactaagctgtagttgtatccaaagtttgc |
114 |
Q |
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||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |
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| T |
13530867 |
catcagacccagcaacaatatttgtctcgaattcaactttctctaaactttcatccaaccctgttcctcctactaagctgtagttatatccatagtttgc |
13530768 |
T |
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| Q |
115 |
ctcatctactgcatctaatttgtgtagcacaaagttggttttgccatctgcaatacaaccattgtaattattta |
188 |
Q |
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| T |
13530767 |
ctcatctactgcatctaatttgtgtagcacaaagttggttttgccatctgcaatataaccattataattattta |
13530694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 13541771 - 13541630
Alignment:
| Q |
15 |
catcagagccagccacaatttttgtctcgaattcaactttctctagactttcatccaatcctgttcctcctactaagctgtagttgtatccaaagtttgc |
114 |
Q |
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||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |
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| T |
13541771 |
catcagatccagccacaatatttgtctcaaattcaactttctctaaactttcatccaatcctgttcctcctactatgctatagttgtatcccaagtttgc |
13541672 |
T |
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| Q |
115 |
ctcatctactgcatctaatttgtgtagcacaaagttggtttt |
156 |
Q |
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| T |
13541671 |
ctcatccattgcttctaatttgtgtagcacaaagtcggtttt |
13541630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 13537730 - 13537569
Alignment:
| Q |
15 |
catcagagccagccacaatttttgtctcgaattcaactttctctagactttcatccaatcctgttcctcctactaagctgtagttgtatccaaagtttgc |
114 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| |||||||||||||| | ||| ||||||||||| |||||||| |
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| T |
13537730 |
catcagagccagccacaatacttgtctcgaattcaactttttctaaactttcatccaaccctgttcctcctacaatgctatagttgtatcccaagtttgc |
13537631 |
T |
|
| Q |
115 |
ctcatctactgcatctaatttgtgtagcacaaagttggttttgccatctgcaatacaaccat |
176 |
Q |
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||||| | ||| |||||||||||||||||| ||| |||||||||| || |||||||||||| |
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| T |
13537630 |
ttcatccattgcttctaatttgtgtagcacatagtcggttttgccacctacaatacaaccat |
13537569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 13530516 - 13530437
Alignment:
| Q |
182 |
ttatttatataattcttttttcgatacaagtaaagtttaactaaaaactctttcatttaaagatcgatttgaactttacc |
261 |
Q |
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||||||||||| |||||||||| ||| ||||| ||||| ||||||||||||||| |||||||||| ||||||||||||| |
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| T |
13530516 |
ttatttatatagttcttttttcaatataagtatagtttgactaaaaactctttcggttaaagatcgttttgaactttacc |
13530437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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