View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17760_low_14 (Length: 273)
Name: NF17760_low_14
Description: NF17760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17760_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 42729316 - 42729560
Alignment:
| Q |
22 |
tgatagctaaataattaaacaattgatgatgatgaatgaattgaatttgtctaacaaagtatagtatataccaagtcaaagagacttgaacgtcgcttct |
121 |
Q |
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| T |
42729316 |
tgatagctaaataattaagcaattgatgatgatgaatgaattgaatttgtctaacaaagtatagtatataccaagtcaaagagacttgaacgtcgcttct |
42729415 |
T |
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| Q |
122 |
tgttgatagtagccaatctgagaaagtatttttgagcatggctagcaacttgtgtaggagttcttgaagtgacaaagtttttagagattcctctccagtc |
221 |
Q |
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| T |
42729416 |
tgttgatagtagccaatctgagaaagtatttttgagcatggctagcaacttgtgtaggagttcttgaagtgacaaagtttttagagattcctctccagtc |
42729515 |
T |
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| Q |
222 |
tccttttcctagcttctctaatccaacaagaaacattctgtgctc |
266 |
Q |
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| T |
42729516 |
tccttttcctagcttctctaatccaacaaggaacattctgtgctc |
42729560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 34848523 - 34848423
Alignment:
| Q |
151 |
ttttgagcatggctagcaacttgtgtaggagttcttgaagtgacaaagtttttagagattcctctccagtctccttttcctagcttctctaatccaacaa |
250 |
Q |
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|||||||||||||| ||||||||||| || ||||||| ||| ||| ||||| ||||||| || ||||| ||||||||||| |||||||| | |||||||| |
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| T |
34848523 |
ttttgagcatggcttgcaacttgtgttggtgttcttgtagtcacatagtttctagagatacccctccaatctccttttccaagcttctcaagtccaacaa |
34848424 |
T |
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| Q |
251 |
g |
251 |
Q |
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| T |
34848423 |
g |
34848423 |
T |
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