View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17760_low_17 (Length: 234)
Name: NF17760_low_17
Description: NF17760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17760_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 54244149 - 54244364
Alignment:
| Q |
1 |
ctgcaaacaccattatcgttggacataagaactctcatgaaggactagaaatgccacaaacagccacattacatgactaacgacattgactagcattcaa |
100 |
Q |
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| T |
54244149 |
ctgcaaacaccattatcgttggacataagaactctcatgaaggactagaaatgccacaaacagccacattacatgactaacgacattgactagcattcaa |
54244248 |
T |
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| Q |
101 |
ataattatcaaggaagatacattatatatgctaaagtcgacatctatgaaatgtatataaccattagtgcgagcaaaattagtgttctcttgtatggtaa |
200 |
Q |
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| T |
54244249 |
ataattatcaaggaagatacattatatatgctaaagtcgacatctatgacatgtatataaccattagtgcgagcaaaattagtgttctcttgtatggtaa |
54244348 |
T |
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| Q |
201 |
tggccctgcaattacc |
216 |
Q |
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| T |
54244349 |
tggccctgcaattacc |
54244364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 54244025 - 54244148
Alignment:
| Q |
70 |
tacatgactaacgacattgactagcattcaaataattatcaaggaagatacattatatatgctaaagtcgacatctatgaaatgtatataaccattagtg |
169 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| | ||||||| || |
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| T |
54244025 |
tacatgtctaacgacattgactagcattctaataattatcaaggaagatacattatctatgctaaagtcaacatctatgacatgtatgt-accattaatg |
54244123 |
T |
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| Q |
170 |
cgagcaaaattagtgttctcttgta |
194 |
Q |
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| T |
54244124 |
cgagcaaaattagtgttctcttgta |
54244148 |
T |
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