View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17760_low_3 (Length: 530)
Name: NF17760_low_3
Description: NF17760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17760_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 10 - 513
Target Start/End: Complemental strand, 19989974 - 19989471
Alignment:
| Q |
10 |
aagaatatgattctttgctgagtttaattccaacctaacattgtcaacatttaagttctcactctcagcattatgccacctaaacaaaaaagggtcgtca |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19989974 |
aagaaaatgattctttgctgagtttaattccaacctaacattgtcaacatttaagttctcactctcagcattatgccacctaaacaaaaaagggtcttca |
19989875 |
T |
|
| Q |
110 |
tggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaagggtgattgaagaatagcctccataggaa |
209 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19989874 |
tagttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaagggtgattgaagaatagcctccatgggaa |
19989775 |
T |
|
| Q |
210 |
gtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttatacaaactagccaaaactgcaggtgctaatgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19989774 |
gtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttatacaaactagccaaaactgcaggtgctaatgc |
19989675 |
T |
|
| Q |
310 |
aataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacacgacttttataaggatgaacaaaaattgacaaccaagtagca |
409 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19989674 |
aataggatttcctctagcaagatgaatagcaacacgaaagaaagaactattcacaacacgacttttataaggatgaacaaaaattgacaaccaagtagca |
19989575 |
T |
|
| Q |
410 |
agaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccatactcttgttctagcattagctgacttagtcttataaagttgctgtc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19989574 |
agaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccatacccttgttctagcattagctgacttagtcttataaagttgctgtc |
19989475 |
T |
|
| Q |
510 |
tttc |
513 |
Q |
| |
|
|||| |
|
|
| T |
19989474 |
tttc |
19989471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 80 - 462
Target Start/End: Original strand, 20036339 - 20036721
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| | || |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
20036339 |
ttatgccacctaaacaaaaaagggtccccatggttcaacaacatgggttgtggttgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaa |
20036438 |
T |
|
| Q |
180 |
agggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttata |
279 |
Q |
| |
|
||||||||| |||| || | || | |||||||||||||||||||||| || ||||||||||| ||| | | | ||||||| ||| |||||||||||| |
|
|
| T |
20036439 |
agggtgattcaagagtaacttctaaaggaagtctatcaccaccaacatgacattttgacaaatcaacaattgttttcttaaacaaagttaaatccttata |
20036538 |
T |
|
| Q |
280 |
caaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacacgacttttataa |
379 |
Q |
| |
|
| |||||| ||||| ||||||||||| |||||| |||||||||||||||||| | |||| | |||| |||||||| ||||| | | |||||| | |
|
|
| T |
20036539 |
tagactagctaaaacagcaggtgctaaagcaatacgatttcctctagcaagatatacagcaataggaaacaaagaacttttcaccaaatagtttttatga |
20036638 |
T |
|
| Q |
380 |
ggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatcca |
462 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
20036639 |
ggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca |
20036721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 80 - 452
Target Start/End: Complemental strand, 19812665 - 19812290
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgg------gttgtggttgtaaatttttgaacctctcccaaacccaaacttgaacca |
173 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19812665 |
ttatgccacctaaacaaaaaagggtcgccatggttgatcaacatagtttgttgttgtggttgcaaatttttgaacctctcccaaacccaaatttgaacca |
19812566 |
T |
|
| Q |
174 |
agtaaaagggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatc |
273 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||| ||||||||||||||||||| ||||||||||| ||| | | | ||||||| |||| |||||| |
|
|
| T |
19812565 |
agtaaaagggtgattgaagagtaatctccaagggaaatctatcaccaccaacaggatattttgacaaatcaacaattgttttcttaaacaaacttaaatc |
19812466 |
T |
|
| Q |
274 |
cttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacacgactt |
373 |
Q |
| |
|
||||| | |||||||| || || ||||| || |||||||||| |||||||||||| |||| || | |||| ||||| | ||||| | | | |
|
|
| T |
19812465 |
tttatatatgctagccaagacagctggtgccaaagcaataggataccctctagcaagaagaatagcgatcggaaacaaagactttttcacca---aatat |
19812369 |
T |
|
| Q |
374 |
ttataaggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaa |
452 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||| |
|
|
| T |
19812368 |
ttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaacgaaaa |
19812290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 80 - 464
Target Start/End: Complemental strand, 19956466 - 19956082
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa |
179 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | || |||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
19956466 |
ttatgccacctaaacaaaaaagggttcctatggttcaacaacatgggttgtggctgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaa |
19956367 |
T |
|
| Q |
180 |
agggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttata |
279 |
Q |
| |
|
|||||||||||||| || || |||| |||||||||||| |||||| ||||||||||| |||| | | ||||| | ||| |||||||||||| |
|
|
| T |
19956366 |
agggtgattgaagagtaagttctgaaggatatctatcaccacccacaggatattttgacaaatcaactgtttttttctttaacaaagttaaatccttata |
19956267 |
T |
|
| Q |
280 |
caaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacacgacttttataa |
379 |
Q |
| |
|
| ||||| ||||| || ||||| || |||||||||||||||||||||||||||| ||| | |||| ||| |||| ||||| | | ||||| | |
|
|
| T |
19956266 |
tatgctagctaaaacagctggtgccaaagcaataggatttcctctagcaagatgaacaacaataggaaacaaataacttttcacggaagaatatttatga |
19956167 |
T |
|
| Q |
380 |
ggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccata |
464 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
19956166 |
gggaaaacaaaaattgacaaccaagtagcaagaaaagcttcatgttcaatttcactacctttatcaatgaaaatatccatccata |
19956082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 128 - 462
Target Start/End: Complemental strand, 19849324 - 19848990
Alignment:
| Q |
128 |
tgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaagggtgattgaagaatagcctccataggaagtctatcaccaccaacag |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||| || ||||| |||| |||||||||||||||| |
|
|
| T |
19849324 |
tgtggttgcaaatttttgaacctctcccacacccaaatttgaaccaaataaaagggtgatttaagagtaatctccaagggaaatctatcaccaccaacat |
19849225 |
T |
|
| Q |
228 |
gaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagc |
327 |
Q |
| |
|
|| ||||||||||| | | | | ||||||| ||| |||||||||||| | |||||| ||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
19849224 |
gacattttgacaaatcagtgattgttttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaatacgatttcctctagc |
19849125 |
T |
|
| Q |
328 |
aagatgaatcgcaacacgaaagaaagaactattcacaacacgacttttataaggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttca |
427 |
Q |
| |
|
||||| | |||| | |||| |||||||| ||||| | | |||||| |||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19849124 |
aagatatacagcaataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttca |
19849025 |
T |
|
| Q |
428 |
agttcattacctttatcaatgaaaacatccatcca |
462 |
Q |
| |
|
| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
19849024 |
atttcactacctttatcaatgaaaatatccatcca |
19848990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 80 - 462
Target Start/End: Original strand, 20015937 - 20016319
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa |
179 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| |||| |
|
|
| T |
20015937 |
ttatgccacctaaacaataaagggtcttcatgattgatcaacatgggttgtggttgtaaaattttgaacctctcccacacccaaatttgaaccaaataaa |
20016036 |
T |
|
| Q |
180 |
agggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttata |
279 |
Q |
| |
|
|||||||||||| || | || | |||| ||||||||||| ||| || ||||||||||| ||| | | | ||||||| |||| |||||| ||||| |
|
|
| T |
20016037 |
tgggtgattgaagtgtaacttctaaaggatacctatcaccacccacatgatattttgacaaatcaacaattgttttcttaaacaaacttaaatctttata |
20016136 |
T |
|
| Q |
280 |
caaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacacgact-tttata |
378 |
Q |
| |
|
| |||||||| || || ||||| || ||||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| | || | ||||| |
|
|
| T |
20016137 |
tatgctagccaagacagctggtgccaaagcaataggatttcgtctagcaagatgaatagcaatcggaaacaaacaacttttcac-ggaagagtatttatg |
20016235 |
T |
|
| Q |
379 |
aggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatcca |
462 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| ||| | ||||||||| |
|
|
| T |
20016236 |
agggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatcca |
20016319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 80 - 477
Target Start/End: Complemental strand, 26647383 - 26646989
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa |
179 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
26647383 |
ttatgccacctaaacaacaaagggtctccttggttgatcaaattgggttgtggttgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaa |
26647284 |
T |
|
| Q |
180 |
agggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttata |
279 |
Q |
| |
|
|||||||||||||| || | |||| |||| ||||||||||||| ||| || |||| ||||| ||| | | | ||||||| |||| |||||||||||| |
|
|
| T |
26647283 |
agggtgattgaagagtaacttccaaaggatatctatcaccaccatcagaaatttttttcaaatcaacaagtgttttcttaaacaaacttaaatccttata |
26647184 |
T |
|
| Q |
280 |
caaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacacgacttttataa |
379 |
Q |
| |
|
|| ||||| ||||| || ||||| || ||||| ||||| |||||||||||||||| |||| | |||| ||| |||| ||||| | | || || | |
|
|
| T |
26647183 |
taagctagctaaaacagccggtgccaaagcaattggattccctctagcaagatgaacagcaataggaaacaaacaacttttcacca---aatttagatga |
26647087 |
T |
|
| Q |
380 |
ggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccatactcttgttctagc |
477 |
Q |
| |
|
||| |||| ||| |||||||||||||| ||| |||||||||||||||| |||| |||||||||| |||||| ||| ||||||| | ||||||||| |
|
|
| T |
26647086 |
ggaaaaacataaactgacaaccaagtagaaaggaatgcttcatgttcaatttcactacctttatccatgaaactatcgatccataatggtgttctagc |
26646989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 80 - 464
Target Start/End: Complemental strand, 19838775 - 19838391
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| | || ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
19838775 |
ttatgccacctaaacaaaaaagggtccccctggttcaacaacattggttgtggttgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaa |
19838676 |
T |
|
| Q |
180 |
agggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttata |
279 |
Q |
| |
|
|||||||||||||| || | || | |||| | |||||| |||||||||| |||||||||||| |||| | | ||||| | ||| |||||| ||||| |
|
|
| T |
19838675 |
agggtgattgaagagtaacttctaaaggatatgtatcacaaccaacaggatgttttgacaaatcaactgtttttttctttaacaaagttaaatcattata |
19838576 |
T |
|
| Q |
280 |
caaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacacgact-tttata |
378 |
Q |
| |
|
| ||||| ||||| || ||||| || ||||||| |||||||||||||||||||| ||| |||| ||| | || ||||| || || | || || |
|
|
| T |
19838575 |
tatgctagctaaaacagctggtgccaaagcaatagaatttcctctagcaagatgaacaacaattggaaacaaaaagcttttcac-gcaagagtgttgatt |
19838477 |
T |
|
| Q |
379 |
aggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccata |
464 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
19838476 |
aggaaaaacaaaaattgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctttatcgatgaaaatatccatccata |
19838391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 80 - 511
Target Start/End: Complemental strand, 19951503 - 19951075
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
19951503 |
ttatgccacctaaacaaaaaagggtctccatggtttatcggcatgggttgtggttgtaaatttttaaacctctcccaaatccaaatttgaaccaagtaaa |
19951404 |
T |
|
| Q |
180 |
agggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttata |
279 |
Q |
| |
|
|||||||||||||| || || | |||| |||||||||||| ||| || ||||||||||| ||| | | || |||| ||| |||||||||||| |
|
|
| T |
19951403 |
agggtgattgaagagtaagttctaaaggatatctatcaccacccacatgatattttgacaaatcaacaattgcttttttaaacaaagttaaatccttata |
19951304 |
T |
|
| Q |
280 |
caaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacacgactt-ttata |
378 |
Q |
| |
|
| ||||| ||||| || || || || ||||||||||||||||||||||||||||| |||| | | | || |||| |||| | | || |||| |
|
|
| T |
19951303 |
tatgctagctaaaacagctggagccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcac----caatttattatt |
19951208 |
T |
|
| Q |
379 |
aggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccatactcttgttctagca |
478 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||| || ||||||||||||| |||| ||||||||||| |||||| ||||||||||| | ||| |||||| |
|
|
| T |
19951207 |
aggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttcatgttcaatttcactacctttatcagtgaaaatatccatccataatgttgctctagcc |
19951108 |
T |
|
| Q |
479 |
ttagctgacttagtcttataaagttgctgtctt |
511 |
Q |
| |
|
|| ||| ||||||||| ||||| ||||||| |
|
|
| T |
19951107 |
atacctgttttagtcttagaaagtgtctgtctt |
19951075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 80 - 464
Target Start/End: Complemental strand, 20046502 - 20046121
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa |
179 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||| ||||||||||||| |||| ||| |||||||||||| ||||||||||||||||| |||| |
|
|
| T |
20046502 |
ttatgccacctaaacaataaagggtcgctgggattgatcaacatgggttgtggtggtaattttgcgaacctctcccacacccaaacttgaaccaaataaa |
20046403 |
T |
|
| Q |
180 |
agggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttata |
279 |
Q |
| |
|
|||||||| ||| | || || | ||||| ||||||||||||||| ||| |||| ||| || || | | ||||||||| ||||| |||||||||||| |
|
|
| T |
20046402 |
agggtgatagaatagtaaattcaacaggaaatctatcaccaccaaccggatattttaacagatcaataattgtgttcttaaataaacttaaatccttata |
20046303 |
T |
|
| Q |
280 |
caaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacacgacttttataa |
379 |
Q |
| |
|
| ||| ||||||| |||||||| || ||||| ||||||||||||||||||| ||| |||| | ||| ||| || | ||||| | | |||||| | |
|
|
| T |
20046302 |
tatgctacccaaaacagcaggtgccaaagcaattggatttcctctagcaagattaatagcaatagaaaacaaacaatttttcacca---tatttttatga |
20046206 |
T |
|
| Q |
380 |
ggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccata |
464 |
Q |
| |
|
||| ||||||||||||||||||||||| ||| || ||||| ||||||| |||| |||||||||| ||||| | ||||||||||| |
|
|
| T |
20046205 |
ggaaaaacaaaaattgacaaccaagtagtaaggaaggcttcgtgttcaatttcactacctttatcgatgaacatatccatccata |
20046121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 82 - 463
Target Start/End: Complemental strand, 19818940 - 19818556
Alignment:
| Q |
82 |
atgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtgg------ttgtaaatttttgaacctctcccaaacccaaacttgaaccaag |
175 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| ||||| |||||| ||| | |||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
19818940 |
atgccacctaaacaaaaaagggtctccatggtttatcaacatggtttgtggcagtggttgcatatttttgaacctctcccacacccatatttgaaccaaa |
19818841 |
T |
|
| Q |
176 |
taaaagggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatcct |
275 |
Q |
| |
|
|||||||||||||||||| || || | ||||| ||||||||||||||||| | ||||||||||| ||||| | | ||||||| |||| |||||| | |
|
|
| T |
19818840 |
taaaagggtgattgaagagtaagttctaaaggaaatctatcaccaccaacagaatattttgacaaatcaactatttttttcttaaacaaacttaaatctt |
19818741 |
T |
|
| Q |
276 |
tatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacacgactttt |
375 |
Q |
| |
|
|||| | |||||||||| || ||||| || ||||||||||| ||||||||||||| || |||||| |||| | | || | ||||| | | | || |
|
|
| T |
19818740 |
tataaatgttagccaaaacagccggtgccaaagcaataggattccctctagcaagattaacagcaacaggaaacagataatttttcacca---aattctt |
19818644 |
T |
|
| Q |
376 |
ataaggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccat |
463 |
Q |
| |
|
|| |||| |||||||||||| ||||||||||||||||| ||||||||||||| ||| |||||||| |||| |||| ||||||||| |
|
|
| T |
19818643 |
atgaggaaaaacaaaaattgataaccaagtagcaagaaaagcttcatgttcaatttcggtacctttaccaataaaaatttccatccat |
19818556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 80 - 459
Target Start/End: Complemental strand, 26653531 - 26653155
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa |
179 |
Q |
| |
|
||||||||||| ||||| || |||| ||| ||||||| | ||||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
26653531 |
ttatgccacctcaacaatgaatggtcttcactattgatcaacttgggttgtggttgcaaatttgtgaacctctcccacacccaaatttgaaccaagtaaa |
26653432 |
T |
|
| Q |
180 |
agggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttata |
279 |
Q |
| |
|
|||||||| | ||| || | |||| ||||| |||||||||||||||| | |||||||||| ||| | | | ||||||| ||| || |||||||| |
|
|
| T |
26653431 |
agggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacaattgttttcttaaacaaagtcaagtccttata |
26653332 |
T |
|
| Q |
280 |
caaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcac-aacacgacttttata |
378 |
Q |
| |
|
| |||||| ||||| || ||||| || |||||||||||||||||||||||||||| |||| | ||| |||||||| ||||| || | | ||| |
|
|
| T |
26653331 |
tatactagctaaaacagctggtgccaaagcaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttcactaattc----tatatg |
26653236 |
T |
|
| Q |
379 |
aggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccat |
459 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| ||||| |||||||||| |||| |||||| |||||||||| |||||| |
|
|
| T |
26653235 |
aggaaaaacaaaaattgacaaccaagctgcaaggaatgcatcatgttcaatttcactaccttagtcaatgaaaatatccat |
26653155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 268 - 462
Target Start/End: Original strand, 24839898 - 24840092
Alignment:
| Q |
268 |
taaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaaca |
367 |
Q |
| |
|
|||||| ||||| || ||||||||||| |||||||| || | ||||||||| |||||||| ||||||| |||||| |||| ||||||| ||||| | | |
|
|
| T |
24839898 |
taaatcgttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagctagatgaacagcaacaggaaacaaagaacatttcactaga |
24839997 |
T |
|
| Q |
368 |
cgact-tttataaggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatcca |
462 |
Q |
| |
|
|| | ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||| ||||||||| |
|
|
| T |
24839998 |
-gagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca |
24840092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 17115094 - 17114992
Alignment:
| Q |
81 |
tatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaa |
180 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
17115094 |
tatgccacctaaacaataaagggtctccatggttgatcaacatggattgtggttgtaaatttttgaacctctcccacatccaaatttgaaccaagtaaaa |
17114995 |
T |
|
| Q |
181 |
ggg |
183 |
Q |
| |
|
||| |
|
|
| T |
17114994 |
ggg |
17114992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 19858451 - 19858343
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa |
179 |
Q |
| |
|
||||||||||||||||| ||||| || |||| ||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
19858451 |
ttatgccacctaaacaataaaggttctccatgcttgatcaacatgggttgtggctctaaatttttgaacctttcccaaacccaaacttgaagcaagtaaa |
19858352 |
T |
|
| Q |
180 |
agggtgatt |
188 |
Q |
| |
|
||||||||| |
|
|
| T |
19858351 |
agggtgatt |
19858343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 131 - 452
Target Start/End: Complemental strand, 30914974 - 30914653
Alignment:
| Q |
131 |
ggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaagggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaa |
230 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| ||| ||||||| ||||||||| |||||| || ||||||||||| ||||||||||||||| || |
|
|
| T |
30914974 |
ggttgcaaattttttaacctctcccaaacccaaatttgtaccaagtcaaagggtgagtgaagagtaacctccataggacatctatcaccaccaacttgat |
30914875 |
T |
|
| Q |
231 |
gttttgacaaattaactaatatgttcttaagtaaacctaaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaag |
330 |
Q |
| |
|
|||||||||| ||||| | | ||||||| |||| |||||| || || | |||||||| | ||||||||||||| | || ||||||||||| |
|
|
| T |
30914874 |
attttgacaaaccaactattgttttcttaaacaaacttaaatctttgtatatgctagccaatttttttggtgctaatgcaacaatgttccctctagcaag |
30914775 |
T |
|
| Q |
331 |
atgaat---cgcaacacgaaagaaagaactattcacaacacgacttttataaggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttca |
427 |
Q |
| |
|
|||||| ||||| | |||| ||| |||| ||||| | | ||| | ||| ||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
30914774 |
atgaataggcgcaataggaaacaaaaaacttttcacca---aatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttca |
30914678 |
T |
|
| Q |
428 |
agttcattacctttatcaatgaaaa |
452 |
Q |
| |
|
| |||| || ||||||||||||||| |
|
|
| T |
30914677 |
atttcactaactttatcaatgaaaa |
30914653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 269 - 471
Target Start/End: Complemental strand, 19858265 - 19858063
Alignment:
| Q |
269 |
aaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacac |
368 |
Q |
| |
|
||||| ||||| || ||||||||||| |||||||| || || |||| |||||||||||||||| ||| |||| | |||| ||||| || |||||| | |
|
|
| T |
19858265 |
aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaatagcaataggaaacaaagatcttttcacattaa |
19858166 |
T |
|
| Q |
369 |
gacttttataaggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccatactct |
468 |
Q |
| |
|
| ||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||| ||||||||| ||| | |
|
|
| T |
19858165 |
agtatctattaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatccacactgt |
19858066 |
T |
|
| Q |
469 |
tgt |
471 |
Q |
| |
|
||| |
|
|
| T |
19858065 |
tgt |
19858063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 80 - 193
Target Start/End: Complemental strand, 19832251 - 19832138
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa |
179 |
Q |
| |
|
|||||||||||||||||||| || || | | ||| | || |||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
19832251 |
ttatgccacctaaacaaaaatggttcccctttgttcaacaacatgggttgtggatgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaa |
19832152 |
T |
|
| Q |
180 |
agggtgattgaaga |
193 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19832151 |
agggtgattgaaga |
19832138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 269 - 452
Target Start/End: Complemental strand, 19853705 - 19853522
Alignment:
| Q |
269 |
aaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacac |
368 |
Q |
| |
|
||||| ||||| || ||||||||||| |||||||| || ||||||| ||| |||||||||||| |||| |||| | |||| ||||| || ||||||| | |
|
|
| T |
19853705 |
aaatcgttatataagctagccaaaacagcaggtgccaaagcaatagtattacctctagcaagacgaatagcaataggaaacaaagatcttttcacaataa |
19853606 |
T |
|
| Q |
369 |
gacttttataaggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaa |
452 |
Q |
| |
|
| ||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||| |
|
|
| T |
19853605 |
agtatctatgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaaagaaaa |
19853522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 269 - 462
Target Start/End: Complemental strand, 19943909 - 19943720
Alignment:
| Q |
269 |
aaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacac |
368 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| || || |||||| | |||||||||||||||| |||| | |||| | ||||| ||||| ||| |
|
|
| T |
19943909 |
aaatccttatataagctagccaaaacagcaggtgccaaagccataggaatccctctagcaagatgaacagcaataggaaaca--gaacttttcaccacat |
19943812 |
T |
|
| Q |
369 |
gacttttataaggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatcca |
462 |
Q |
| |
|
| ||| |||| |||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| ||||||||| |
|
|
| T |
19943811 |
tgtatctatgaggaaaaacaaa--ttgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaatatccatcca |
19943720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 19944098 - 19943987
Alignment:
| Q |
78 |
cattatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagta |
177 |
Q |
| |
|
||||||||||||| ||||| | | |||| ||| ||||||| | | |||||||| || |||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
19944098 |
cattatgccacctcaacaatacatggtctccattattgatcaactttggttgtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggta |
19943999 |
T |
|
| Q |
178 |
aaagggtgattg |
189 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19943998 |
aaagggtgattg |
19943987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 24839756 - 24839822
Alignment:
| Q |
123 |
tgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaagggtgattg |
189 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24839756 |
tgggttgtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
24839822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 19853873 - 19853764
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa |
179 |
Q |
| |
|
||||||||||| ||||| | | |||| ||| |||||||| | | |||||||| || |||||| |||| |||||||| |||||| |||| |||||||||| |
|
|
| T |
19853873 |
ttatgccacctcaacaatacatggtctccattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaagcttgtaccaagtaaa |
19853774 |
T |
|
| Q |
180 |
agggtgattg |
189 |
Q |
| |
|
|||||||||| |
|
|
| T |
19853773 |
agggtgattg |
19853764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 81 - 464
Target Start/End: Original strand, 26354664 - 26355047
Alignment:
| Q |
81 |
tatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaa |
180 |
Q |
| |
|
||||||| |||||||| |||||||| || ||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
26354664 |
tatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaattttttgaacctctcccacacccaaatttgaaccaagtaaaa |
26354763 |
T |
|
| Q |
181 |
gggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttatac |
280 |
Q |
| |
|
|||||||||||| || | || | |||| ||||||||||||||||| | ||||||||||| ||| | | ||||||| | | |||||||||||| |
|
|
| T |
26354764 |
cggtgattgaagagtaacttctaaaggatatctatcaccaccaacagataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatat |
26354863 |
T |
|
| Q |
281 |
aaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattca-caacacgacttttataa |
379 |
Q |
| |
|
| ||||| ||||| || ||||| || ||||||| ||||||||||||||||||||| |||| | |||| |||||||| |||| ||||| | |||| | | |
|
|
| T |
26354864 |
atgctagctaaaacagccggtgccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttct-a |
26354962 |
T |
|
| Q |
380 |
ggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccata |
464 |
Q |
| |
|
||| |||||||||||| ||||||| | ||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||| |
|
|
| T |
26354963 |
ggaaaaacaaaaattgataaccaagcaacaatgaatgcttcatgttcaacttcactacctttatccatgaaaacatccatccata |
26355047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 80 - 463
Target Start/End: Complemental strand, 9815416 - 9815036
Alignment:
| Q |
80 |
ttatgccacctaaacaaaaaagggtcgtcatggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa |
179 |
Q |
| |
|
||||| ||||||||||| |||||||| | || ||||||| |||||||| ||| |||||||||| |||||||||||| ||||||| |||||||||||||| |
|
|
| T |
9815416 |
ttatgtcacctaaacaataaagggtctccgtgattgatcaacatgggttctggctgtaaattttggaacctctcccacacccaaatttgaaccaagtaaa |
9815317 |
T |
|
| Q |
180 |
agggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttata |
279 |
Q |
| |
|
|||||||||||||| || | || | |||| ||||||||||||||||| | ||||||||||||||||| | | ||||||| |||| |||||| ||||| |
|
|
| T |
9815316 |
agggtgattgaagagtaacttctaaaggatatctatcaccaccaacagataattttgacaaattaactattgttttcttaaacaaacttaaatcgttata |
9815217 |
T |
|
| Q |
280 |
caaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacacgacttttataa |
379 |
Q |
| |
|
| |||||| ||||| || ||||| || ||||||| ||||||||||||||||||||| |||| | ||| |||||||| ||||| | | || ||||| | |
|
|
| T |
9815216 |
aatactagctaaaacagctggtgccaaagcaatagaatttcctctagcaagatgaatagcaatagaaaacaaagaacttttcacca-aaga--tttatga |
9815120 |
T |
|
| Q |
380 |
ggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccat |
463 |
Q |
| |
|
| |||||| ||||||||||| ||||||| || |||||||| |||| |||| ||||||| || ||||||| |||||||||| |
|
|
| T |
9815119 |
gttaaaacaaagattgacaaccacgtagcaatgaacgcttcatgctcaatttcactacctttgtcgatgaaaaaatccatccat |
9815036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 126 - 476
Target Start/End: Complemental strand, 1717547 - 1717200
Alignment:
| Q |
126 |
gttgtggttgtaaatttttgaacctctcccaa-acccaaacttgaaccaagtaaaagggtgattgaagaatagcctccataggaagtctatcaccaccaa |
224 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||| ||||||| |||||||||||||||||||||||||||| || ||||| ||| || |||||| ||||||| |
|
|
| T |
1717547 |
gttgtgattgtaaacttttgaacct-tcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctatcgccaccaa |
1717449 |
T |
|
| Q |
225 |
caggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctct |
324 |
Q |
| |
|
||||| |||||||||| ||||| | | ||||||| ||| |||||||||||| | ||||| ||||| || ||||| || ||||||||||||||||| |
|
|
| T |
1717448 |
caggatattttgacaaaccaactattgttttcttaaacaaagttaaatccttatatatgctagctaaaacagccggtgccaaagcaataggatttcctct |
1717349 |
T |
|
| Q |
325 |
agcaagatgaatcgcaacacgaaagaaagaactattcacaacacgacttttataaggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgt |
424 |
Q |
| |
|
||||||||||| |||| | |||| ||||| | ||||| | | ||||| |||| |||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
1717348 |
agcaagatgaacagcaataggaaacaaagattttttcacca---aagctttatgaggaaaaacataaaccgacaaccaagtagcaagaaatgcttcatgt |
1717252 |
T |
|
| Q |
425 |
tcaagttcattacctttatcaatgaaaacatccatccatactcttgttctag |
476 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
1717251 |
tcaatttcactacctttatcaacaaaaacatccatccataatgttgttctag |
1717200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 269 - 462
Target Start/End: Original strand, 22689580 - 22689773
Alignment:
| Q |
269 |
aaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcaca-aca |
367 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||| || ||||||| ||| |||||||| |||||||| | || | ||| |||||||| || || ||| |
|
|
| T |
22689580 |
aaatccttatatatgctagccaaaacagcaggtgccaaagcaatagtattgcctctagccagatgaatagaaatagtaaacaaagaacttttgaccgaca |
22689679 |
T |
|
| Q |
368 |
cgacttttataaggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatcca |
462 |
Q |
| |
|
| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
22689680 |
t-atttttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattaccattatcgatgaaaacatccatcca |
22689773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 11544420 - 11544343
Alignment:
| Q |
112 |
gttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaagggtgattg |
189 |
Q |
| |
|
|||||||| | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11544420 |
gttgatcaacttgggttttggttgcaaatttttgaacctctcccaaacccaaacttgaaccaagtaaatgggtgattg |
11544343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 385 - 477
Target Start/End: Original strand, 22652129 - 22652221
Alignment:
| Q |
385 |
aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccatactcttgttctagc |
477 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||| |||| |||||||||| ||||||| ||||||||||| | ||| |||||| |
|
|
| T |
22652129 |
aacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaatatccatccataatgttgctctagc |
22652221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 22689445 - 22689521
Alignment:
| Q |
113 |
ttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaagggtgattg |
189 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22689445 |
ttgatcaacatgggccgtggttgcaaatttttgaacctctcccacacccaaacttgaaccaagtaaaagggtgattg |
22689521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 335
Target Start/End: Original strand, 22651780 - 22651884
Alignment:
| Q |
231 |
gttttgacaaattaactaatatgttcttaagtaaacctaaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaag |
330 |
Q |
| |
|
|||||||||||| ||| | | | ||||||| ||| |||||||||||||| ||||||||||| || ||||| || ||||||||||||||||||||||| |
|
|
| T |
22651780 |
gttttgacaaatcaacaattgttttcttaaacaaagttaaatccttatacatgctagccaaaacagctggtgcaaaagcaataggatttcctctagcaag |
22651879 |
T |
|
| Q |
331 |
atgaa |
335 |
Q |
| |
|
||||| |
|
|
| T |
22651880 |
atgaa |
22651884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 11563916 - 11563973
Alignment:
| Q |
132 |
gttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaagggtgattg |
189 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
11563916 |
gttgcaaatttttgaacctctcccaaagccaaactttaaccaagtaaatgggtgattg |
11563973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 442
Target Start/End: Original strand, 22685647 - 22685778
Alignment:
| Q |
308 |
gcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaactattcacaacacgacttttataaggatgaacaaaaattgacaaccaagtag |
407 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |||| | |||| | ||||| | | |||||| |||| |||||||| ||||||||||| || |
|
|
| T |
22685647 |
gcaataggattccctctagcaagatgaatagcaatcggaaacatagaagttttcaccaaaa---ttttatgaggaaaaacaaaaagtgacaaccaagcag |
22685743 |
T |
|
| Q |
408 |
caagaaatgcttcatgttcaagttcattaccttta |
442 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||||| |
|
|
| T |
22685744 |
caagaaatgcttcatgctcaatttcactaccttta |
22685778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 11564059 - 11564147
Alignment:
| Q |
269 |
aaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatcgcaacacgaaagaaagaact |
357 |
Q |
| |
|
||||||||||| || | ||||| ||| | |||||||| |||||||| ||||||||||||||||||| |||| | |||| |||||||| |
|
|
| T |
11564059 |
aaatccttatataagcaagccagaaccgacggtgctaaagcaataggttttcctctagcaagatgaacagcaataggaaacaaagaact |
11564147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 464
Target Start/End: Original strand, 6397784 - 6397858
Alignment:
| Q |
390 |
aaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccata |
464 |
Q |
| |
|
||||||||||||| |||||||| || ||||||||||||| |||| |||||||||| ||||| | ||||||||||| |
|
|
| T |
6397784 |
aaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaacatatccatccata |
6397858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 6398611 - 6398537
Alignment:
| Q |
112 |
gttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaagggtga |
186 |
Q |
| |
|
|||||||| |||| |||||||||| || ||| ||||||||||||| ||| |||||||||||| |||||| ||||| |
|
|
| T |
6398611 |
gttgatcaacatgagttgtggttgcaagtttgtgaacctctcccacacctaaacttgaaccacgtaaaaaggtga |
6398537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 464
Target Start/End: Complemental strand, 6398338 - 6398259
Alignment:
| Q |
385 |
aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccata |
464 |
Q |
| |
|
|||||||||| |||||||| ||||||| || ||||||||||||| |||| ||||||||| || || | ||||||||||| |
|
|
| T |
6398338 |
aacaaaaattaacaaccaattagcaaggaaggcttcatgttcaatttcactacctttatagataaacatatccatccata |
6398259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 332
Target Start/End: Original strand, 6397539 - 6397727
Alignment:
| Q |
144 |
tgaacctctcccaaacccaaacttgaaccaagtaaaagggtgattgaagaatagcctccataggaagtctatcaccaccaacaggaagttttgacaaatt |
243 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| |||||| ||||| || || | | ||| | ||||| |||||||| || ||| ||||||| |
|
|
| T |
6397539 |
tgaacctcttccacgcccaaacttgaaccaagtaaaaaggtgatagaagagtaaattcaacatgaaatttatcatcaccaacaagatatttcgacaaatc |
6397638 |
T |
|
| Q |
244 |
aactaatatgttcttaagtaaacctaaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagat |
332 |
Q |
| |
|
|| | | | ||||||| |||| |||||||||||| | |||||||||| | ||||| || ||||| |||||| |||||||||||| |
|
|
| T |
6397639 |
aataattgttttcttaaataaagataaatccttatatatgatagccaaaacagatggtgccaaagcaattggattttctctagcaagat |
6397727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 12581469 - 12581426
Alignment:
| Q |
385 |
aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaa |
428 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
12581469 |
aacaaaaattgacaaccaagtagcaaggaaggcttcatgttcaa |
12581426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 12497557 - 12497482
Alignment:
| Q |
110 |
tggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaagggtga |
186 |
Q |
| |
|
|||||||||| |||| |||||||||| || ||| || |||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
12497557 |
tggttgatcaacatgagttgtggttgcaagtttgcgagcctctcccaa-cccaaacatgaaccaagtaaaaaggtga |
12497482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 12521422 - 12521347
Alignment:
| Q |
110 |
tggttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaagggtga |
186 |
Q |
| |
|
|||||||||| |||| |||||||||| || ||| || |||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
12521422 |
tggttgatcaacatgagttgtggttgcaagtttgcgagcctctcccaa-cccaaacatgaaccaagtaaaaaggtga |
12521347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 12497286 - 12497243
Alignment:
| Q |
385 |
aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaa |
428 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
12497286 |
aacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaa |
12497243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 12521151 - 12521108
Alignment:
| Q |
385 |
aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaa |
428 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
12521151 |
aacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaa |
12521108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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