View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17760_low_4 (Length: 437)

Name: NF17760_low_4
Description: NF17760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17760_low_4
NF17760_low_4
[»] chr2 (28 HSPs)
chr2 (1-419)||(34760557-34760986)
chr2 (283-417)||(2609266-2609400)
chr2 (271-417)||(14489204-14489350)
chr2 (348-417)||(44617916-44617985)
chr2 (348-419)||(25411609-25411680)
chr2 (347-417)||(37431610-37431680)
chr2 (294-416)||(39918447-39918570)
chr2 (275-409)||(25333493-25333627)
chr2 (347-407)||(4925506-4925566)
chr2 (347-417)||(32969624-32969694)
chr2 (284-417)||(34679100-34679234)
chr2 (1-117)||(34748050-34748171)
chr2 (347-419)||(5470512-5470584)
chr2 (270-334)||(6592713-6592777)
chr2 (284-417)||(43028797-43028930)
chr2 (347-403)||(25452-25508)
chr2 (282-406)||(4576544-4576669)
chr2 (284-417)||(14943722-14943854)
chr2 (279-402)||(14489404-14489526)
chr2 (347-409)||(16043207-16043269)
chr2 (348-406)||(31827721-31827779)
chr2 (348-409)||(8857114-8857175)
chr2 (347-406)||(5470394-5470453)
chr2 (284-403)||(21361884-21362003)
chr2 (347-409)||(18969279-18969341)
chr2 (347-393)||(37803190-37803236)
chr2 (347-407)||(6510186-6510247)
chr2 (359-415)||(43741681-43741737)
[»] chr1 (26 HSPs)
chr1 (284-417)||(3377504-3377638)
chr1 (276-409)||(15659176-15659313)
chr1 (347-419)||(39642383-39642455)
chr1 (347-409)||(8301530-8301592)
chr1 (347-417)||(17760751-17760821)
chr1 (348-417)||(44672380-44672449)
chr1 (289-417)||(25085570-25085696)
chr1 (347-417)||(16874680-16874750)
chr1 (347-417)||(23220633-23220703)
chr1 (305-417)||(50401395-50401507)
chr1 (280-417)||(7579662-7579801)
chr1 (279-419)||(45738934-45739074)
chr1 (347-417)||(6569684-6569754)
chr1 (278-397)||(17692724-17692843)
chr1 (348-409)||(8009796-8009857)
chr1 (210-282)||(4949034-4949106)
chr1 (284-334)||(5287835-5287885)
chr1 (284-330)||(14978800-14978846)
chr1 (347-409)||(18632382-18632444)
chr1 (371-417)||(23891812-23891858)
chr1 (359-417)||(41997818-41997876)
chr1 (348-417)||(6320631-6320700)
chr1 (294-330)||(1096480-1096516)
chr1 (357-409)||(10532442-10532494)
chr1 (294-334)||(50226405-50226445)
chr1 (294-334)||(51250498-51250538)
[»] chr8 (18 HSPs)
chr8 (279-417)||(41487387-41487525)
chr8 (347-417)||(37813268-37813338)
chr8 (347-408)||(20853443-20853504)
chr8 (279-417)||(32071192-32071327)
chr8 (281-417)||(37939914-37940047)
chr8 (279-334)||(19499436-19499491)
chr8 (347-417)||(3676305-3676375)
chr8 (305-419)||(30539166-30539281)
chr8 (347-409)||(16982796-16982857)
chr8 (363-417)||(29044724-29044778)
chr8 (347-417)||(45177268-45177338)
chr8 (347-408)||(26823893-26823954)
chr8 (282-334)||(25896991-25897043)
chr8 (347-394)||(29657770-29657817)
chr8 (347-409)||(6807354-6807416)
chr8 (347-409)||(21486721-21486783)
chr8 (276-334)||(28349568-28349626)
chr8 (348-409)||(45457175-45457237)
[»] chr5 (29 HSPs)
chr5 (284-419)||(37897893-37898028)
chr5 (279-417)||(27904660-27904799)
chr5 (294-417)||(3333878-3334002)
chr5 (283-332)||(8284157-8284206)
chr5 (284-409)||(12406225-12406351)
chr5 (294-417)||(32391896-32392020)
chr5 (347-409)||(9852853-9852915)
chr5 (347-409)||(18403053-18403115)
chr5 (276-338)||(40133136-40133198)
chr5 (347-417)||(40276206-40276276)
chr5 (348-417)||(20512264-20512333)
chr5 (349-417)||(2974702-2974770)
chr5 (305-409)||(20629929-20630034)
chr5 (347-419)||(31080543-31080615)
chr5 (274-405)||(36798163-36798296)
chr5 (347-417)||(19131677-19131747)
chr5 (347-417)||(22300667-22300737)
chr5 (348-418)||(26702504-26702573)
chr5 (348-418)||(26972237-26972306)
chr5 (309-409)||(16132773-16132873)
chr5 (279-373)||(12406039-12406134)
chr5 (361-409)||(3999283-3999331)
chr5 (280-406)||(19340763-19340887)
chr5 (291-334)||(21066385-21066428)
chr5 (347-406)||(28446192-28446251)
chr5 (305-417)||(35166320-35166432)
chr5 (351-405)||(39574309-39574361)
chr5 (347-396)||(35166491-35166540)
chr5 (347-406)||(32391785-32391845)
[»] chr3 (38 HSPs)
chr3 (279-417)||(51315661-51315800)
chr3 (281-417)||(44585963-44586100)
chr3 (347-417)||(44433241-44433311)
chr3 (278-419)||(578588-578728)
chr3 (347-417)||(44436575-44436645)
chr3 (347-417)||(48348436-48348505)
chr3 (347-415)||(38957913-38957981)
chr3 (294-417)||(54719174-54719296)
chr3 (347-417)||(33329794-33329864)
chr3 (359-417)||(54464241-54464299)
chr3 (348-417)||(8024959-8025028)
chr3 (275-395)||(50802653-50802773)
chr3 (275-395)||(50873104-50873224)
chr3 (284-409)||(20432369-20432494)
chr3 (347-417)||(28712521-28712591)
chr3 (347-417)||(43747457-43747527)
chr3 (352-409)||(25843437-25843494)
chr3 (316-417)||(3916465-3916566)
chr3 (362-417)||(4474150-4474205)
chr3 (347-406)||(28944095-28944154)
chr3 (347-417)||(14340911-14340981)
chr3 (347-409)||(19404579-19404641)
chr3 (347-409)||(27178332-27178394)
chr3 (347-393)||(28712663-28712709)
chr3 (347-409)||(47189779-47189841)
chr3 (360-409)||(86653-86702)
chr3 (272-328)||(36677783-36677839)
chr3 (272-328)||(36687862-36687918)
chr3 (290-334)||(38177187-38177231)
chr3 (280-334)||(14856815-14856869)
chr3 (284-334)||(22494556-22494606)
chr3 (351-417)||(35359067-35359133)
chr3 (347-393)||(38958046-38958092)
chr3 (304-406)||(43747302-43747405)
chr3 (278-331)||(7218419-7218472)
chr3 (96-128)||(595891-595923)
chr3 (347-399)||(35359179-35359231)
chr3 (347-406)||(44585854-44585914)
[»] chr4 (41 HSPs)
chr4 (305-415)||(20112329-20112439)
chr4 (289-417)||(2016799-2016928)
chr4 (271-409)||(51362526-51362668)
chr4 (274-415)||(1420723-1420865)
chr4 (348-409)||(44356583-44356644)
chr4 (347-409)||(2654154-2654216)
chr4 (294-414)||(14449464-14449586)
chr4 (284-417)||(25909490-25909624)
chr4 (294-409)||(2836912-2837028)
chr4 (271-417)||(12719622-12719770)
chr4 (347-417)||(10059874-10059944)
chr4 (281-417)||(53924928-53925064)
chr4 (278-417)||(8965693-8965827)
chr4 (347-417)||(21597579-21597649)
chr4 (363-417)||(27978774-27978828)
chr4 (347-417)||(31553419-31553489)
chr4 (347-417)||(51371530-51371600)
chr4 (284-393)||(21957668-21957778)
chr4 (295-419)||(14060878-14061003)
chr4 (361-417)||(21322888-21322944)
chr4 (357-409)||(43074773-43074825)
chr4 (279-405)||(53312284-53312412)
chr4 (347-409)||(6207359-6207421)
chr4 (347-417)||(6637240-6637310)
chr4 (284-338)||(8070631-8070685)
chr4 (280-395)||(16292269-16292383)
chr4 (284-338)||(19909176-19909230)
chr4 (284-332)||(1420538-1420586)
chr4 (364-408)||(20118089-20118133)
chr4 (284-335)||(43074826-43074877)
chr4 (282-417)||(47999531-47999666)
chr4 (271-337)||(1571389-1571455)
chr4 (284-334)||(21871645-21871695)
chr4 (284-334)||(21927506-21927556)
chr4 (284-334)||(35615317-35615367)
chr4 (348-406)||(53924814-53924872)
chr4 (279-332)||(2017051-2017104)
chr4 (289-334)||(14060764-14060809)
chr4 (281-334)||(50769363-50769416)
chr4 (348-388)||(29697590-29697630)
chr4 (362-406)||(50769551-50769595)
[»] chr6 (17 HSPs)
chr6 (289-409)||(10727379-10727500)
chr6 (279-409)||(2853600-2853732)
chr6 (273-417)||(26601453-26601597)
chr6 (284-409)||(6036845-6036969)
chr6 (284-417)||(30349352-30349485)
chr6 (348-417)||(32143326-32143395)
chr6 (347-417)||(26311581-26311651)
chr6 (360-417)||(3812820-3812876)
chr6 (284-396)||(266125-266237)
chr6 (359-406)||(6036723-6036770)
chr6 (289-396)||(20474903-20475010)
chr6 (278-417)||(33399783-33399921)
chr6 (348-419)||(1377275-1377346)
chr6 (348-419)||(1385023-1385094)
chr6 (351-406)||(5605903-5605958)
chr6 (347-406)||(12766403-12766462)
chr6 (279-332)||(2203185-2203238)
[»] scaffold0248 (1 HSPs)
scaffold0248 (347-418)||(470-541)
[»] chr7 (26 HSPs)
chr7 (279-417)||(28785932-28786073)
chr7 (279-373)||(6792017-6792112)
chr7 (281-409)||(18504243-18504372)
chr7 (274-417)||(36580452-36580595)
chr7 (284-417)||(28472393-28472524)
chr7 (305-409)||(15029085-15029190)
chr7 (347-409)||(28350183-28350245)
chr7 (278-417)||(41243641-41243779)
chr7 (284-417)||(47909697-47909830)
chr7 (279-417)||(15107169-15107305)
chr7 (347-393)||(3381929-3381975)
chr7 (347-409)||(6726440-6726501)
chr7 (347-417)||(20184984-20185054)
chr7 (347-417)||(23826086-23826156)
chr7 (363-408)||(8073957-8074002)
chr7 (279-335)||(4049704-4049760)
chr7 (347-406)||(15348145-15348204)
chr7 (279-338)||(19645058-19645117)
chr7 (347-390)||(40872351-40872394)
chr7 (362-417)||(45717980-45718035)
chr7 (359-417)||(36903341-36903399)
chr7 (284-406)||(36903459-36903578)
chr7 (294-330)||(3318331-3318367)
chr7 (347-406)||(5172711-5172771)
chr7 (282-334)||(18186713-18186765)
chr7 (380-408)||(39883499-39883527)
[»] scaffold0137 (1 HSPs)
scaffold0137 (284-409)||(19917-20042)
[»] scaffold0328 (1 HSPs)
scaffold0328 (347-417)||(9478-9548)
[»] scaffold0025 (1 HSPs)
scaffold0025 (347-417)||(19206-19276)
[»] scaffold0015 (1 HSPs)
scaffold0015 (347-417)||(76929-76998)
[»] scaffold0011 (1 HSPs)
scaffold0011 (347-417)||(145420-145490)
[»] scaffold0515 (1 HSPs)
scaffold0515 (273-334)||(3631-3692)
[»] scaffold0306 (1 HSPs)
scaffold0306 (273-334)||(3631-3692)
[»] scaffold0150 (2 HSPs)
scaffold0150 (294-406)||(9568-9676)
scaffold0150 (351-409)||(9722-9779)
[»] scaffold0041 (1 HSPs)
scaffold0041 (347-390)||(93888-93931)
[»] scaffold0194 (1 HSPs)
scaffold0194 (347-409)||(25085-25146)
[»] scaffold0067 (1 HSPs)
scaffold0067 (347-392)||(4216-4261)


Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 34760557 - 34760986
Alignment:
Q  1 gaataataacattagatagggtgagaagtattagattttggtacaccaaatatgaatacttatactatatgttagagtaatactagttttctaccgagta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  34760557 gaataataacattagatagggtgagaagtattagattttggtacaccaaatatgaatacttatactatatgttagagtaatactagttttctactgggta 34760656  T
Q  101 aaccatcaaattcgtctacgactttgtatgacgctctcaaataagttcatgggagcatgaatatttcaaaaggtttattgattctgtcgaatt------- 193  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||           
T  34760657 aaccaccaaattcgtctacgactttgtatgacgctctcaaataagttcatcggagcatgaatatttcaaaaggtttattgattccgtcgaattttactca 34760756  T
Q  194 --ttacacatattagttcatgttaggaactacattgatagtaagtggtaaaatataaagtctaaattattagtaagttgttaaaatataggtttaaaagc 291  Q
      |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| | | || |||    
T  34760757 tattactcatattagttcatgttaggaactacattgatagtacgtggttaaatataaagtctaaattattagtaagttgttaaaatatatgctcaatagc 34760856  T
Q  292 aattttaaccccataacttttccaaagttgcgattttggcccctaag--gnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttga 389  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||          |||||||| ||||||||||||||||||||||| |||||||||     
T  34760857 aattttaaccccataattttcccaaagttgcgattttggtccctaagaaaaaaaaaactacaaaaccgccccctaagttttgcatatgtggcagttttgg 34760956  T
Q  390 cccccaagaccaattttgacgcggtctatg 419  Q
    ||||||||||||||||||||| ||||||||    
T  34760957 cccccaagaccaattttgacgtggtctatg 34760986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 283 - 417
Target Start/End: Complemental strand, 2609400 - 2609266
Alignment:
Q  283 tttaaaagcaattttaaccccataacttttccaaagttgcgattttgg-cccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgc 381  Q
    ||||| |||| ||||||| | ||||||||| ||||||||||||||||| ||||||||        ||||||||||||||| |||||||| ||||||| ||    
T  2609400 tttaatagcagttttaactcaataactttttcaaagttgcgattttggtcccctaag-aaaaaaactacaaaatcgccccataagttttacatatgtggc 2609302  T
Q  382 agttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||||||||||| |||||||||| |||||||    
T  2609301 agttttgacccccaagatcaattttgactcggtcta 2609266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 417
Target Start/End: Original strand, 14489204 - 14489350
Alignment:
Q  271 ttaaaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagtttt 370  Q
    |||||||| ||| |||| |||| ||||| |||  ||||||| | ||||||| ||||||||||||| | |        ||||||| |||||||||||||||    
T  14489204 ttaaaataaaggcttaatagcagttttagccctctaactttccaaaagttgtgattttggccccttaagaaaaaaattacaaaaccgccccctaagtttt 14489303  T
Q  371 gcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||  ||| |||||||||||| ||||||||||||||||| |||||||    
T  14489304 gcacctgtggcagttttgacctccaagaccaattttgactcggtcta 14489350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 44617985 - 44617916
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| |||||||    
T  44617985 tacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaagaccaattttgactcggtcta 44617916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 419
Target Start/End: Original strand, 25411609 - 25411680
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtctatg 419  Q
    ||||||| ||||||||||||||||||| ||| |||||||| |||||||| |||||||||||| |||||||||    
T  25411609 tacaaaaccgccccctaagttttgcatctgtggcagttttcacccccaataccaattttgactcggtctatg 25411680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 37431610 - 37431680
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||||||||| ||||||||||||| ||| ||||||||| |||||||| ||||||||||| |||||||    
T  37431610 ctacaaaatcgcccactaagttttgcatttgtggcagttttggcccccaaggccaattttgactcggtcta 37431680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 416
Target Start/End: Original strand, 39918447 - 39918570
Alignment:
Q  294 ttttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgaccc 392  Q
    ||||| |||| |||||||  ||||||||||||||||||||| ||||        || ||||||||||| ||||||||||||||||| || |||||| |||    
T  39918447 ttttagccccctaactttctcaaagttgcgattttggccccctaagaaaaaaaactgcaaaatcgcccgctaagttttgcatatgtggctgttttggccc 39918546  T
Q  393 ccaagaccaattttgacgcggtct 416  Q
    ||||| ||||||||||| ||||||    
T  39918547 ccaaggccaattttgactcggtct 39918570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 409
Target Start/End: Original strand, 25333493 - 25333627
Alignment:
Q  275 aatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcat 374  Q
    |||||||| |||| | ||||||||||||| |||||||||||||||||||||||||| |||| | |       ||| |||| | ||||||||||||||||     
T  25333493 aatataggcttaataacaattttaaccccttaacttttccaaagttgcgattttggtcccttaagaaaaaaactataaaaccaccccctaagttttgcac 25333592  T
Q  375 atgtcgcagttttgacccccaagaccaattttgac 409  Q
     ||| |||||||||  | ||||| |||||||||||    
T  25333593 ctgtggcagttttggtctccaaggccaattttgac 25333627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 4925506 - 4925566
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttg 407  Q
    |||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||    
T  4925506 ctacaaaaccgtcccctaagttttgcatatgtggcagttttgacccctaagaccaattttg 4925566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 32969624 - 32969694
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||||||||||||||||||| ||| ||| ||||||||| | |||||| ||||||||||| |||||||    
T  32969624 ctacaaaatcgccccctaagtttttcatttgtggcagttttggctcccaaggccaattttgactcggtcta 32969694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 34679100 - 34679234
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcc-cctaaggnnnnnnnctacaaaatcgcccc-ctaagttttgcatatgtcgc 381  Q
    |||| |||| ||||| |||| |||||||||||||||||||||||||||| ||||||         ||||||| |||||| |||||||||||| |||| ||    
T  34679100 ttaatagcagttttagccccctaacttttccaaagttgcgattttggccacctaagaaaaaaat-tacaaaaccgcccccctaagttttgcacatgtggc 34679198  T
Q  382 agttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||| || ||||||| ||||||||| |||||||    
T  34679199 agttttggcctccaagacaaattttgacccggtcta 34679234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 34748050 - 34748171
Alignment:
Q  1 gaataataacattagatagggtgagaagtattagattttggtacaccaaatatgaatacttat-----actatatgttagagtaatactagttttctacc 95  Q
    ||||||||  |||| |||||||||   ||||| ||||||||| |||||||||||| ||||| |     ||||||| ||||||||||||||||||||||      
T  34748050 gaataatagtattaaatagggtgaagggtattcgattttggttcaccaaatatgagtacttttttattactatattttagagtaatactagttttctagt 34748149  T
Q  96 gagtaaaccatcaaattcgtct 117  Q
    |||||||||| ||||| |||||    
T  34748150 gagtaaaccaccaaatccgtct 34748171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 419
Target Start/End: Complemental strand, 5470584 - 5470512
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtctatg 419  Q
    |||||||| |||||| |||||||| ||| ||| ||||||||| |||||||| ||||||||||| |||||||||    
T  5470584 ctacaaaaccgccccttaagttttacatctgtggcagttttggcccccaaggccaattttgactcggtctatg 5470512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 6592713 - 6592777
Alignment:
Q  270 gttaaaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    ||||||||||||| |||| |||| ||||| |||| ||||||||||||||||||||||||| ||||    
T  6592713 gttaaaatataggcttaatagcagttttagccccctaacttttccaaagttgcgattttgacccc 6592777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 43028797 - 43028930
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttgg-cccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgca 382  Q
    |||| |||| ||||| |||| |||||| ||||||||||||||||||| ||||||||        |||||||| | ||||||||||||||||| ||| |||    
T  43028797 ttaatagcagttttagccccctaacttctccaaagttgcgattttggccccctaagaaaaaaaactacaaaa-ccccccctaagttttgcatctgtggca 43028895  T
Q  383 gttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||| || | | | ||||||||||| |||||||    
T  43028896 gttttggcctctagggccaattttgactcggtcta 43028930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 25452 - 25508
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaat 403  Q
    |||||||| ||||||||||||||||||  ||| |||||||||||||||||| |||||    
T  25452 ctacaaaaccgccccctaagttttgcacctgtggcagttttgacccccaaggccaat 25508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 406
Target Start/End: Original strand, 4576544 - 4576669
Alignment:
Q  282 gtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcg 380  Q
    |||||| |||| ||||| || | |||||||| ||||||||  ||||||||||| ||||        ||||||||||| ||| |||||||||||  ||| |    
T  4576544 gtttaatagcagttttagcctcctaactttttcaaagttgtcattttggccccctaagaaaaaaaactacaaaatcgtcccataagttttgcaactgtag 4576643  T
Q  381 cagttttgacccccaagaccaatttt 406  Q
    |||||||| |||||||||||||||||    
T  4576644 cagttttggcccccaagaccaatttt 4576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 417
Target Start/End: Complemental strand, 14943854 - 14943722
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcag 383  Q
    |||| |||| ||||| |||| ||||||||||||||||| |||||||| | |||||        |||||||| ||||| ||||||||||||  ||| |||     
T  14943854 ttaatagcagttttagccccttaacttttccaaagttgtgattttggtctctaag-aaaaaaactacaaaaccgccctctaagttttgcacctgtggcat 14943756  T
Q  384 ttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||| |||||||| | ||||||||| |||||||    
T  14943755 ttttggcccccaaggctaattttgactcggtcta 14943722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 402
Target Start/End: Complemental strand, 14489526 - 14489404
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgt 378  Q
    |||| |||| |||| ||||  |||| |||||||  | |||||||||||||||||||||||        |||||||||| ||||||||||||||||  |||    
T  14489526 taggcttaatagcagttttcgccccctaactttcacgaagttgcgattttggcccctaag-aaaaaaactacaaaatcaccccctaagttttgcaactgt 14489428  T
Q  379 cgcagttttgacccccaagaccaa 402  Q
     ||||||||| |||||||| ||||    
T  14489427 ggcagttttggcccccaaggccaa 14489404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 16043269 - 16043207
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||| || ||||||||| ||||||||| ||| ||||||||| |||||||| |||||||||||    
T  16043269 ctacagaaccgccccctatgttttgcatctgtggcagttttggcccccaaggccaattttgac 16043207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 406
Target Start/End: Complemental strand, 31827779 - 31827721
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaatttt 406  Q
    ||||||||| ||||||||||||||||  ||| ||||||||| |||||||| ||||||||    
T  31827779 tacaaaatcaccccctaagttttgcaactgtagcagttttggcccccaaggccaatttt 31827721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 8857114 - 8857175
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||||| |||| |||||||||||||| ||| ||||||||| |||||||  |||||||||||    
T  8857114 tacaaaaccgcctcctaagttttgcatttgtggcagttttggcccccaatgccaattttgac 8857175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 406
Target Start/End: Original strand, 5470394 - 5470453
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaatttt 406  Q
    ||||||||  |||||||||||||||||  ||| ||||||||| |||||||| ||||||||    
T  5470394 ctacaaaactgccccctaagttttgcaattgtagcagttttggcccccaaggccaatttt 5470453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 403
Target Start/End: Original strand, 21361884 - 21362003
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccct-aaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgca 382  Q
    |||| |||||||||  |||| |||||||  |||||||||||||||||||||| |||        |||||||| | |||||||||||||||| |||| |||    
T  21361884 ttaatagcaatttttgcccc-taactttatcaaagttgcgattttggccccttaagaaaaaaaactacaaaaacaccccctaagttttgcacatgtggca 21361982  T
Q  383 gttttgacccccaagaccaat 403  Q
    |||||| | |||||| |||||    
T  21361983 gttttggctcccaaggccaat 21362003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 18969341 - 18969279
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||||||||| || |||| ||||| || ||| || ||||||||||||||| |||||||||||    
T  18969341 ctacaaaatcgtcctctaaattttgtatttgtggctgttttgacccccaaggccaattttgac 18969279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 37803190 - 37803236
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccc 393  Q
    |||||||| |||| |||||||||||||| ||| ||||||||||||||    
T  37803190 ctacaaaaccgcctcctaagttttgcatttgtggcagttttgacccc 37803236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 407
Target Start/End: Complemental strand, 6510247 - 6510186
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagtttt-gacccccaagaccaattttg 407  Q
    |||||||| ||||||||||||||||||  ||| |||||||| | |||||||||| |||||||    
T  6510247 ctacaaaaccgccccctaagttttgcaactgtagcagttttggccccccaagactaattttg 6510186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 43741737 - 43741681
Alignment:
Q  359 cccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtc 415  Q
    |||||| || |||||| | | ||||||||||||||| |||||||||||||| |||||    
T  43741737 cccctatgtattgcatctttggcagttttgaccccctagaccaattttgactcggtc 43741681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 3377504 - 3377638
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgca 382  Q
    |||| |||| ||||| |||| |||||||||||||||||||||||||||||| ||||        |||||||| ||||||||||||||||||| ||| |||    
T  3377504 ttaatagcagttttagccccctaacttttccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcatttgtggca 3377603  T
Q  383 gttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||| |||||||| ||||||||||| |||||||    
T  3377604 gttttggcccccaaggccaattttgactcggtcta 3377638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 276 - 409
Target Start/End: Complemental strand, 15659313 - 15659176
Alignment:
Q  276 atataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttgg-cccctaaggnnnnnnn---ctacaaaatcgccccctaagttttg 371  Q
    |||||||||||| |||| |||||| ||| ||||||||||||||||| |||||||| ||||||||           |||||||||||||||| ||||||||    
T  15659313 atataggtttaatagcagttttaagcccctaacttttccaaagttgtgattttggtcccctaagaagaaaaaaaactacaaaatcgcccccaaagttttg 15659214  T
Q  372 catatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||||| ||  ||||| ||| ||||||||||||||||    
T  15659213 catatgtggcgattttggccctcaagaccaattttgac 15659176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 419
Target Start/End: Complemental strand, 39642455 - 39642383
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtctatg 419  Q
    |||||||| ||||||||||||||||||| ||| ||||||||| |||||||  ||||||||||| |||||||||    
T  39642455 ctacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaaagccaattttgactcggtctatg 39642383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 8301592 - 8301530
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||| || ||||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  8301592 ctacaaaaccgtcccctaaattttgcatctgtggcagttttgacccccaagaccaattttgac 8301530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 17760751 - 17760821
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| | ||||||||||||||||||||| ||||||||| || |||||| |||||||||| |||||||    
T  17760751 ctacaaaaccaccccctaagttttgcatatgtggcagttttggccaccaagatcaattttgactcggtcta 17760821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 44672380 - 44672449
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||| ||||||||||||||||||||||| ||||||||| | ||||||| |||||||||  |||||||    
T  44672380 tacaaaaccgccccctaagttttgcatatgtggcagttttggcgcccaagatcaattttgattcggtcta 44672449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 417
Target Start/End: Complemental strand, 25085696 - 25085570
Alignment:
Q  289 agcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttg 388  Q
    |||||||||| |||| ||||||||||||||||| ||||||||||||||||        |||||||  ||| ||| |||||||| |  ||| |||||||||    
T  25085696 agcaattttagccccctaacttttccaaagttgtgattttggcccctaag--aaaaaactacaaatccgcaccccaagttttgtacctgtggcagttttg 25085599  T
Q  389 acccccaagaccaattttgacgcggtcta 417  Q
     ||| ||||| |||||||||| |||||||    
T  25085598 gccctcaagatcaattttgacccggtcta 25085570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 16874750 - 16874680
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| |||||| |||||||||||| ||| ||||||||| | |||||| ||||||||||| |||||||    
T  16874750 ctacaaaaccgccccataagttttgcatctgtggcagttttggctcccaaggccaattttgactcggtcta 16874680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 23220633 - 23220703
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| |||||| ||||||||||| |||| || |||||| |||||||||||||||||||  |||||||    
T  23220633 ctacaaaaccgccccttaagttttgcacatgtggcggttttggcccccaagaccaattttgattcggtcta 23220703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 417
Target Start/End: Original strand, 50401395 - 50401507
Alignment:
Q  305 taacttttccaaagttgcgattttgg-cccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaat 403  Q
    |||||||| |||| |||||||||||| ||||||||        |||||||| ||||||||||||||||||| |||  ||||||||  ||||||| |||||    
T  50401395 taactttttcaaaattgcgattttggtcccctaagaaatataactacaaaaccgccccctaagttttgcatttgtgacagttttg-gccccaaggccaat 50401493  T
Q  404 tttgacgcggtcta 417  Q
    |||||| |||||||    
T  50401494 tttgactcggtcta 50401507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 417
Target Start/End: Original strand, 7579662 - 7579801
Alignment:
Q  280 aggtttaaaagcaattttaaccccataacttttccaaagttgcgattttgg--cccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatg 377  Q
    |||||||| |||| |||||||||| ||||||| | ||||||||||||||||  ||||||||        |||||||| ||||| ||||||||||||  ||    
T  7579662 aggtttaatagcagttttaaccccttaactttccaaaagttgcgattttggcccccctaagaaaaaaaactacaaaaccgcccgctaagttttgcacttg 7579761  T
Q  378 tcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    | ||| ||||  |||||||  | ||||||||| |||||||    
T  7579762 tggcaatttttgcccccaaagctaattttgactcggtcta 7579801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 419
Target Start/End: Original strand, 45738934 - 45739074
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgt 378  Q
    |||| |||| |||||||||||| || |||||||  |||||||| ||||||| ||||  | |       |||||||| |||||| |||||||||||| | |    
T  45738934 taggcttaatagcaattttaactccctaactttctcaaagttgtgattttgaccccctaaggaaaaaactacaaaaccgccccttaagttttgcatctat 45739033  T
Q  379 cgcagttttgacccccaagaccaattttgacgcggtctatg 419  Q
     ||||||||| |||||||   |||||||||| |||||||||    
T  45739034 ggcagttttggcccccaaagtcaattttgactcggtctatg 45739074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 6569754 - 6569684
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| |||||| |||||||| ||| ||| ||||||||| ||| |||||||||||||||  |||||||    
T  6569754 ctacaaaaccgccccttaagttttacatttgtggcagttttggccctcaagaccaattttgattcggtcta 6569684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 397
Target Start/End: Original strand, 17692724 - 17692843
Alignment:
Q  278 ataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatg 377  Q
    |||||||||| ||||||||||||||| |||||||  |||||||| |||||| |||||  | |        |||||||||||||| |||||||||||| ||    
T  17692724 ataggtttaatagcaattttaaccccctaactttctcaaagttgtgattttagccccctaagaaaaaaaatacaaaatcgccccttaagttttgcatttg 17692823  T
Q  378 tcgcagttttgacccccaag 397  Q
    | || ||||| | |||||||    
T  17692824 tggcggttttcatccccaag 17692843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 8009796 - 8009857
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||||| ||| ||| ||||||||||| |||  ||||||||||| |||||||||||||||||    
T  8009796 tacaaaaccgctcccgaagttttgcatctgtgacagttttgaccaccaagaccaattttgac 8009857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 4949106 - 4949034
Alignment:
Q  210 atgttaggaactacattgatagtaagtggtaaaatataaagtctaaattattagtaagttgttaaaatatagg 282  Q
    |||||||  |||| ||||| |||||||||| ||||||| || | |||||| |||||| |||||||||||||||    
T  4949106 atgttagagactaaattgagagtaagtggttaaatatagagacgaaattaatagtaaattgttaaaatatagg 4949034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 5287885 - 5287835
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||| |||| |||||||||| |||||||  |||||||||||||||||||||    
T  5287885 ttaatagcagttttaaccccttaactttctcaaagttgcgattttggcccc 5287835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 330
Target Start/End: Original strand, 14978800 - 14978846
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttgg 330  Q
    |||| |||| ||||| |||| ||||||||||||||||||||||||||    
T  14978800 ttaatagcagttttagccccctaacttttccaaagttgcgattttgg 14978846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 409
Target Start/End: Original strand, 18632382 - 18632444
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||||||| |||| ||||||||||||| |||  |||||||| |||||| || ||||||||||    
T  18632382 ctacaaaattgccctctaagttttgcatttgtgacagttttggcccccaggatcaattttgac 18632444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 23891858 - 23891812
Alignment:
Q  371 gcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| ||||||||| | |||||||||||||||||| |||||||    
T  23891858 gcatatgtggcagttttggctcccaagaccaattttgactcggtcta 23891812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 41997876 - 41997818
Alignment:
Q  359 cccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| ||||||| ||| ||||||||| || ||||| ||||||||||| |||||||    
T  41997876 cccctaagctttgcatctgtggcagttttggcctccaaggccaattttgactcggtcta 41997818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 6320631 - 6320700
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||| || ||||||| |||||||| ||| | ||||||||||||  |||||||||| ||| |||||||    
T  6320631 tacaaaaccgtcccctaaattttgcatctgtggtagttttgaccccttagaccaatttcgactcggtcta 6320700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 1096480 - 1096516
Alignment:
Q  294 ttttaaccccataacttttccaaagttgcgattttgg 330  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  1096480 ttttagccccttaacttttccaaagttgcgattttgg 1096516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 10532494 - 10532442
Alignment:
Q  357 gccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||||||||| |||| ||| | ||||||||||||||  ||||||||||||||    
T  10532494 gccccctaagtattgcttattttgcagttttgacccctgagaccaattttgac 10532442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 50226405 - 50226445
Alignment:
Q  294 ttttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    ||||| |||| |||||||| |||||||||||||||||||||    
T  50226405 ttttagccccctaactttttcaaagttgcgattttggcccc 50226445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 51250498 - 51250538
Alignment:
Q  294 ttttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    ||||| |||| |||||||| |||||||||||||||||||||    
T  51250498 ttttagccccctaactttttcaaagttgcgattttggcccc 51250538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 417
Target Start/End: Complemental strand, 41487525 - 41487387
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgt 378  Q
    ||||||||| |||| ||||| |||  |||||||||||||||||||||||| |||| ||||        |||||||| ||||||||||||||||||  |||    
T  41487525 taggtttaatagcagttttagccctctaacttttccaaagttgcgattttagcccttaagaaaaaaaactacaaaaccgccccctaagttttgcaactgt 41487426  T
Q  379 cgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
     || |||||| |||||||||||||||||||| |||||||    
T  41487425 agctgttttggcccccaagaccaattttgactcggtcta 41487387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 37813338 - 37813268
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| ||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| |||||||    
T  37813338 ctacaaaaccgccccctaagttttgcatctgtggcagttttggcccccaaggccaattttgactcggtcta 37813268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 408
Target Start/End: Original strand, 20853443 - 20853504
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttga 408  Q
    |||||||| | ||||||||||||||||||||| ||||||||| ||||||||| |||||||||    
T  20853443 ctacaaaaccaccccctaagttttgcatatgtggcagttttggcccccaagatcaattttga 20853504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 417
Target Start/End: Complemental strand, 32071327 - 32071192
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgt 378  Q
    |||| |||| |||| ||||| |||| ||||||||| ||||||||||||||| ||||||||        |||||||| ||||||||||||||||||||| |    
T  32071327 taggcttaatagcagttttagcccc-taacttttctaaagttgcgattttgacccctaag--aaaaaactacaaaaccgccccctaagttttgcatatat 32071231  T
Q  379 cgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
      ||||||||  | |||||| |||||||||| |||||||    
T  32071230 gacagttttggtctccaagaacaattttgactcggtcta 32071192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 417
Target Start/End: Original strand, 37939914 - 37940047
Alignment:
Q  281 ggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcg 380  Q
    ||||||| |||| ||||| || | ||| |||| |||||||||||||||||||||| |         |||||||| | ||||||||||||||||||||| |    
T  37939914 ggtttaatagcagttttagcctcttaattttttcaaagttgcgattttggcccctta--aaaaaaactacaaaaccaccccctaagttttgcatatgtgg 37940011  T
Q  381 cagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||  | ||||||||||||||||| |||||||    
T  37940012 cagttttg-gcaccaagaccaattttgactcggtcta 37940047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 19499491 - 19499436
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||||||||||||| |||||||||| ||||||||  ||||||||||||||||||||    
T  19499491 taggtttaaaagcatttttaaccccgtaacttttaaaaagttgcgattttggcccc 19499436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 3676375 - 3676305
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| ||||| ||||||||||||| ||| |||||||||  |||||| |||||||||||| |||||||    
T  3676375 ctacaaaaccgcccactaagttttgcatctgtggcagttttggtccccaaaaccaattttgactcggtcta 3676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 419
Target Start/End: Complemental strand, 30539281 - 30539166
Alignment:
Q  305 taacttttccaaagttgcgattttgg-cccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaat 403  Q
    ||||||| |||||||||||||||||| ||||||||        |||||||| || |||||||||||||||| ||| ||||||||| |||||||   ||||    
T  30539281 taactttcccaaagttgcgattttggtcccctaagaaaaaaaactacaaaaccgtcccctaagttttgcatctgtggcagttttggcccccaatgtcaat 30539182  T
Q  404 tttgacgcggtctatg 419  Q
    |||||  |||||||||    
T  30539181 tttgattcggtctatg 30539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 16982857 - 16982796
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||| ||||||||||||||||||| |||  |||||||| |||||||| |||||||||||    
T  16982857 ctacaaaaccgccccctaagttttgcatctgtgccagttttg-cccccaaggccaattttgac 16982796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 417
Target Start/End: Complemental strand, 29044778 - 29044724
Alignment:
Q  363 taagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||||||| ||| ||||||||| |||||||| ||||||||||| |||||||    
T  29044778 taagttttgcatttgtggcagttttggcccccaaggccaattttgactcggtcta 29044724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 45177268 - 45177338
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||||| |||||||||||||||| |||  |||||||| ||| |||| | ||||||||| |||||||    
T  45177268 ctacaaaatcgtcccctaagttttgcatctgtgacagttttggccctcaaggctaattttgactcggtcta 45177338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 408
Target Start/End: Original strand, 26823893 - 26823954
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttga 408  Q
    |||||||||| ||||||||||||||||| ||| |||||||||  ||||||  ||||||||||    
T  26823893 ctacaaaatcaccccctaagttttgcatttgtggcagttttgggccccaatgccaattttga 26823954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 25896991 - 25897043
Alignment:
Q  282 gtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||||| |||| ||||| |||| |||||||| |||||||||||||||||||||    
T  25896991 gtttaatagcagttttagccccctaactttttcaaagttgcgattttggcccc 25897043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 394
Target Start/End: Original strand, 29657770 - 29657817
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgaccccc 394  Q
    |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  29657770 ctacaaaaccgccccctaaattttgcatatgtggcagttttggccccc 29657817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 6807416 - 6807354
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||| | ||||||||||||||||| ||| ||||||||| ||| ||||  ||||||||||    
T  6807416 ctacaaaaccaccccctaagttttgcatttgtggcagttttgtccctcaaggtcaattttgac 6807354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 409
Target Start/End: Original strand, 21486721 - 21486783
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||| ||||||||||||||||||  ||| ||| ||||| || |||||| ||||||||||    
T  21486721 ctacaaaaccgccccctaagttttgcacctgtggcatttttggcctccaagatcaattttgac 21486783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 28349626 - 28349568
Alignment:
Q  276 atataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    ||||||| |||| || | ||||| |||| ||||||| ||||||||||||||||||||||    
T  28349626 atataggcttaatagtagttttagccccctaactttcccaaagttgcgattttggcccc 28349568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 45457237 - 45457175
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaa-gaccaattttgac 409  Q
    |||||||||| ||||||| |||||||| ||| ||||||||||| ||||| | |||||||||||    
T  45457237 tacaaaatcgtcccctaaattttgcatctgtggcagttttgactcccaaggcccaattttgac 45457175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 284 - 419
Target Start/End: Complemental strand, 37898028 - 37897893
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgca 382  Q
    |||| |||| ||||| |||| |||||||| ||||||||||||||||||||| ||||        |||||||| |||||| |||||||||||||||| |||    
T  37898028 ttaatagcagttttagccccctaactttttcaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgcccc-taagttttgcatatgtggca 37897930  T
Q  383 gttttgacccccaagaccaattttgacgcggtctatg 419  Q
    |||||| || ||||||||||||||||| |||||||||    
T  37897929 gttttggcctccaagaccaattttgactcggtctatg 37897893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 417
Target Start/End: Complemental strand, 27904799 - 27904660
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatg 377  Q
    |||| |||| |||| ||||| |||  |||||||| ||||||||||||||||||||| ||||        |||||||| ||||||||||||||||||  ||    
T  27904799 taggcttaatagcagttttagccctctaactttttcaaagttgcgattttggccccgtaagaaaaaaaactacaaaaccgccccctaagttttgcacttg 27904700  T
Q  378 tcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    | ||||||||| |||||||||||||||||||| |||||||    
T  27904699 tggcagttttgtcccccaagaccaattttgactcggtcta 27904660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 417
Target Start/End: Complemental strand, 3334002 - 3333878
Alignment:
Q  294 ttttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgaccc 392  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||||        |||||||| ||| || |||||||||||||||| ||||||||| |||    
T  3334002 ttttagccccctaacttttccaaagttgcgattttggccccctaagaagaaaaactacaaaaccgctccataagttttgcatatgtggcagttttggccc 3333903  T
Q  393 ccaagaccaattttgacgcggtcta 417  Q
    |||||  |||||||||| |||||||    
T  3333902 ccaaggtcaattttgactcggtcta 3333878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 8284157 - 8284206
Alignment:
Q  283 tttaaaagcaattttaaccccataacttttccaaagttgcgattttggcc 332  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8284157 tttaatagcaattttaaccccataacttttccaaagttgcgattttggcc 8284206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 12406351 - 12406225
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnn-ctacaaaatcgccccctaagttttgcatatgtcgca 382  Q
    |||| |||||||||| |||| |||||||| |||||||| ||||||||||||||||         | |||||| ||||||||||||||| ||| ||| |||    
T  12406351 ttaatagcaattttagccccctaactttttcaaagttgagattttggcccctaagaaaaaaaaacaacaaaaccgccccctaagttttacatctgtggca 12406252  T
Q  383 gttttgacccccaagaccaattttgac 409  Q
    |||||| |||||||| |||||||||||    
T  12406251 gttttggcccccaaggccaattttgac 12406225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 417
Target Start/End: Complemental strand, 32392020 - 32391896
Alignment:
Q  294 ttttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgaccc 392  Q
    ||||||| || |||||||| ||||||||||||||| ||||| ||||        |||||||| |||||| |||||||||||| |||  ||||||||||      
T  32392020 ttttaactccctaactttttcaaagttgcgattttagccccctaagaaaaaaaactacaaaaccgccccttaagttttgcatgtgtgacagttttgacat 32391921  T
Q  393 ccaagaccaattttgacgcggtcta 417  Q
    ||||||||||||||||| |||||||    
T  32391920 ccaagaccaattttgactcggtcta 32391896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 409
Target Start/End: Original strand, 9852853 - 9852915
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||||||||||||||||||||||| ||| ||||||||| | |||||| |||||||||||    
T  9852853 ctacaaaatcgccccctaagttttgcatctgtggcagttttggctcccaaggccaattttgac 9852915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 409
Target Start/End: Original strand, 18403053 - 18403115
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||||| | ||||||||||||||| | | ||||||||||||||||||||||||||||||    
T  18403053 ctacaaaatcactccctaagttttgcatctctggcagttttgacccccaagaccaattttgac 18403115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 40133198 - 40133136
Alignment:
Q  276 atataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaag 338  Q
    |||| ||||||| |||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  40133198 atattggtttaatagcaattttagccccctaactttcccaaagttgcgattttggcccctaag 40133136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 40276276 - 40276206
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| || |||||||||||||||||||| ||| |||||||||||||| | ||||||||| |||||||    
T  40276276 ctacaaaaccgtcccctaagttttgcatatgtggcaattttgacccccaaggctaattttgacccggtcta 40276206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 20512264 - 20512333
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||  |||||||||||||||||  ||| | |||||||||||||||||||||||||||| |||||||    
T  20512264 tacaaaactgccccctaagttttgcacctgtggtagttttgacccccaagaccaattttgactcggtcta 20512333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 417
Target Start/End: Original strand, 2974702 - 2974770
Alignment:
Q  349 acaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||| ||||||||||||||||||| ||| ||||||||| |||||||  ||||||||||| |||||||    
T  2974702 acaaaaccgccccctaagttttgcatctgtggcagttttggcccccaatgccaattttgactcggtcta 2974770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 409
Target Start/End: Complemental strand, 20630034 - 20629929
Alignment:
Q  305 taacttttccaaagttgcgattttggcccct-aaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaat 403  Q
    ||||||||||||||||| ||||||||||||| |||        |||||||| ||||||||||||||||||| ||| | ||||||| || ||| |||||||    
T  20630034 taacttttccaaagttgtgattttggccccttaagaaaaaaaactacaaaaccgccccctaagttttgcatttgtggaagttttggcctccaggaccaat 20629935  T
Q  404 tttgac 409  Q
    ||||||    
T  20629934 tttgac 20629929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 419
Target Start/End: Original strand, 31080543 - 31080615
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtctatg 419  Q
    |||||||| | ||||||||||||||||| ||| ||||||||| |||||||| |||||||| || |||||||||    
T  31080543 ctacaaaaccaccccctaagttttgcatctgtggcagttttggcccccaaggccaattttaactcggtctatg 31080615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 405
Target Start/End: Original strand, 36798163 - 36798296
Alignment:
Q  274 aaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnn-ctacaaaatcgccccctaagttttg 371  Q
    ||||| ||| |||| |||| |||||  ||| |||||||||||||||||| ||||||||||| ||||         |||||||| | ||||||||||||||    
T  36798163 aaataaaggcttaatagcagttttagacccttaacttttccaaagttgcaattttggccccctaagaaaaaaaaactacaaaaccaccccctaagttttg 36798262  T
Q  372 catatgtcgcagttttgacccccaagaccaattt 405  Q
    ||| ||| ||||||||| ||||||||||||||||    
T  36798263 catctgtggcagttttggcccccaagaccaattt 36798296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 19131747 - 19131677
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| ||||||||||||||||||| |||  |||||||| |||| ||| ||||||||||| |||||||    
T  19131747 ctacaaaaccgccccctaagttttgcatctgtgacagttttggccccgaaggccaattttgactcggtcta 19131677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 22300667 - 22300737
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| || ||| ||||||||| |||||| |||||||||||  ||||||||||||||||| |||||||    
T  22300667 ctacaaaaccgtcccttaagttttgtatatgtggcagttttgacttccaagaccaattttgactcggtcta 22300737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 418
Target Start/End: Original strand, 26702504 - 26702573
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtctat 418  Q
    ||||||| ||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||  ||||||||    
T  26702504 tacaaaaccgccccc-aagttttgcatttgtggcagttttggcccccaagaccaattttgattcggtctat 26702573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 418
Target Start/End: Original strand, 26972237 - 26972306
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtctat 418  Q
    ||||||| ||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||  ||||||||    
T  26972237 tacaaaaccgccccc-aagttttgcatttgtggcagttttggcccccaagaccaattttgattcggtctat 26972306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 16132773 - 16132873
Alignment:
Q  309 ttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttga 408  Q
    |||||||||||||||||||||||| |||||         ||||||| ||||||||||||||||||  | | |||||||||  ||||||| ||||||||||    
T  16132773 ttttccaaagttgcgattttggccactaagaaataaaattacaaaaccgccccctaagttttgcacctatggcagttttggtccccaaggccaattttga 16132872  T
Q  409 c 409  Q
    |    
T  16132873 c 16132873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 373
Target Start/End: Original strand, 12406039 - 12406134
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttgg-cccctaaggnnnnnnnctacaaaatcgccccctaagttttgca 373  Q
    |||| |||| |||| ||||| |||| ||||||| |||||||||||||||||| ||||||||        |||||||| ||||||||||||||||||    
T  12406039 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaagaaaactacaaaaccgccccctaagttttgca 12406134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 3999331 - 3999283
Alignment:
Q  361 cctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||||| ||||||| ||||||||| |||||||| |||||||||||    
T  3999331 cctaagttttacatatgtggcagttttggcccccaaggccaattttgac 3999283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 406
Target Start/End: Original strand, 19340763 - 19340887
Alignment:
Q  280 aggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgt 378  Q
    |||||||| |||| ||||| |||| ||||||||||||| ||||||||||| |||| |||          ||||||||||||||||||||||||||  |||    
T  19340763 aggtttaatagcagttttagccccctaacttttccaaaattgcgattttgaccccctaa----aaaaattacaaaatcgccccctaagttttgcaactgt 19340858  T
Q  379 cgcagtttt-gacccccaagaccaatttt 406  Q
     |||||||| | ||||||||| |||||||    
T  19340859 agcagttttggccccccaagatcaatttt 19340887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 21066385 - 21066428
Alignment:
Q  291 caattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||||||| |||| |||||||||||||||| |||||||||||||    
T  21066385 caattttagccccctaacttttccaaagtttcgattttggcccc 21066428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 28446251 - 28446192
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaatttt 406  Q
    |||||||| || |||||||||||||||  ||| ||||||||| ||||||||| |||||||    
T  28446251 ctacaaaaccgtcccctaagttttgcaactgtagcagttttggcccccaagatcaatttt 28446192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 417
Target Start/End: Original strand, 35166320 - 35166432
Alignment:
Q  305 taacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaatt 404  Q
    ||||||||||||| ||||||||||| ||||  | |       ||||||||||||||||||||||||||| |||| || |||||| ||  |||   |||||    
T  35166320 taacttttccaaaattgcgattttgaccccctaagaaaaaaactacaaaatcgccccctaagttttgcacatgtggcggttttggccttcaatgtcaatt 35166419  T
Q  405 ttgacgcggtcta 417  Q
    ||||| |||||||    
T  35166420 ttgactcggtcta 35166432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 39574309 - 39574361
Alignment:
Q  351 aaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattt 405  Q
    |||||| ||||||||||||||||| ||  ||||||||| ||||||||||||||||    
T  39574309 aaaatcaccccctaagttttgcatgtg--gcagttttggcccccaagaccaattt 39574361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 35166540 - 35166491
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaa 396  Q
    |||||||||| ||||||||||||||||  ||| ||||||||| |||||||    
T  35166540 ctacaaaatcaccccctaagttttgcagctgtagcagttttggcccccaa 35166491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 406
Target Start/End: Original strand, 32391785 - 32391845
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagtttt-gacccccaagaccaatttt 406  Q
    |||||||||| ||||||||||||||||  ||| |||||||| | |||||||| ||||||||    
T  32391785 ctacaaaatcaccccctaagttttgcaactgtagcagttttggccccccaaggccaatttt 32391845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 417
Target Start/End: Complemental strand, 51315800 - 51315661
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatg 377  Q
    |||| |||| |||| ||||| |||| ||||||| |||||||||||||||||||||| ||||        |||||||| ||||||||||||||||||  ||    
T  51315800 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcacctg 51315701  T
Q  378 tcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    | ||||||||| |||||||| ||||||||||| |||||||    
T  51315700 tggcagttttggcccccaaggccaattttgactcggtcta 51315661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 417
Target Start/End: Complemental strand, 44586100 - 44585963
Alignment:
Q  281 ggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtc 379  Q
    ||||||| |||| ||||| |||| ||||||| |||||||||||||||||||||| ||||        |||||||| ||||||||||||||||| | |||     
T  44586100 ggtttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcttctgtg 44586001  T
Q  380 gcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||| |||||| | ||||||||||| |||||||    
T  44586000 gcagttttggcccccacggccaattttgactcggtcta 44585963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 44433311 - 44433241
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||||    
T  44433311 ctacaaaaccgccccctaagttttgcatatgtggcagttttggcccccaaggccaattttgacccggtcta 44433241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 578728 - 578588
Alignment:
Q  278 ataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatg 377  Q
    |||||||||| | || ||||| || | ||||||||||||||||||||||||||||||||||        |||||||| || |||||||||||| ||  ||    
T  578728 ataggtttaatatcagttttagcctcctaacttttccaaagttgcgattttggcccctaagaaaaaaaactacaaaaccg-cccctaagtttttcacctg 578630  T
Q  378 tcgcagttttgacccccaagaccaattttgacgcggtctatg 419  Q
    | | ||||||| |||||||| ||||||||||| |||||||||    
T  578629 tggtagttttggcccccaaggccaattttgactcggtctatg 578588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 44436645 - 44436575
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| ||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| |||||||    
T  44436645 ctacaaaaccgccccctaagttttgcatctgtggcagttttggcccccaaggccaattttgactcggtcta 44436575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 48348505 - 48348436
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||    
T  48348505 ctacaaaatcgccccttaagttttgcatatgtggcagttttga-ccccaagcccaattttgactcggtcta 48348436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 38957913 - 38957981
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtc 415  Q
    |||||||| ||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| |||||    
T  38957913 ctacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaaggccaattttgactcggtc 38957981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 417
Target Start/End: Complemental strand, 54719296 - 54719174
Alignment:
Q  294 ttttaaccccataacttttccaaagttgcgattttggcc-cctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgaccc 392  Q
    |||||||||| |||||| | ||||||||||||||||||| ||||||        |||||||| |||||||||||||||||||||||  ||| |||| |||    
T  54719296 ttttaaccccctaacttattcaaagttgcgattttggcctcctaag--aaaaaactacaaaaccgccccctaagttttgcatatgtaccaggtttggccc 54719199  T
Q  393 ccaagaccaattttgacgcggtcta 417  Q
    ||||  ||||||||||| |||||||    
T  54719198 ccaatgccaattttgactcggtcta 54719174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 33329864 - 33329794
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| || ||||||||| |||||| ||| ||||||||| |||||||||||||||||||| |||||||    
T  33329864 ctacaaaaccgtcccctaagtattgcatttgtggcagttttggcccccaagaccaattttgactcggtcta 33329794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 417
Target Start/End: Original strand, 54464241 - 54464299
Alignment:
Q  359 cccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||||| |||||||    
T  54464241 cccctaagttttgcatatgtggcagttttgacccccaaggtcaattttgactcggtcta 54464299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 8025028 - 8024959
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||||| |||||||||||||||||||| | ||||||| || |||||||||||||| || |||||||    
T  8025028 tacaaaatcgtcccctaagttttgcatatgtggtagttttggcctccaagaccaattttaactcggtcta 8024959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 395
Target Start/End: Original strand, 50802653 - 50802773
Alignment:
Q  275 aatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcat 374  Q
    |||||| | |||| |||| |||||||| | ||||||||||||||||| ||||||||||||  | |       ||||||||   ||||||||||||||||     
T  50802653 aatataagcttaatagcagttttaacctcttaacttttccaaagttgtgattttggccccctaagaaaaaaactacaaaactaccccctaagttttgcac 50802752  T
Q  375 atgtcgcagttttgaccccca 395  Q
    |||| ||||||||||||||||    
T  50802753 atgtggcagttttgaccccca 50802773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 395
Target Start/End: Complemental strand, 50873224 - 50873104
Alignment:
Q  275 aatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcat 374  Q
    |||||| | |||| |||| |||||||| | ||||||||||||||||| ||||||||||||  | |       ||||||||   ||||||||||||||||     
T  50873224 aatataagcttaatagcagttttaacctcttaacttttccaaagttgtgattttggccccctaagaaaaaaactacaaaactaccccctaagttttgcac 50873125  T
Q  375 atgtcgcagttttgaccccca 395  Q
    |||| ||||||||||||||||    
T  50873124 atgtggcagttttgaccccca 50873104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 20432494 - 20432369
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttgg-cccctaaggnnnnnnnctacaaaatcgccccctaagttttg-catatgtcgc 381  Q
    |||| |||| |||||||||| ||||||||| ||||||| |||||||| ||||||||        |||||||||| |||||||||||||  ||| ||| ||    
T  20432494 ttaatagcatttttaaccccctaacttttcaaaagttgtgattttggtcccctaag--aaaaaactacaaaatcaccccctaagtttttacatctgtggc 20432397  T
Q  382 agttttgacccccaagaccaattttgac 409  Q
    ||||||||||||||||  ||||||||||    
T  20432396 agttttgacccccaaggacaattttgac 20432369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 28712521 - 28712591
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||||||||||||||||||||||| ||| ||||||||  | |||||| |||| |||||| |||||||    
T  28712521 ctacaaaatcgccccctaagttttgcatctgtagcagttttagcacccaaggccaactttgactcggtcta 28712591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 43747527 - 43747457
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| ||||||||||||||||||| | | ||||||||| |||||| || |||||||||| |||||||    
T  43747527 ctacaaaaccgccccctaagttttgcatttatggcagttttggcccccacgatcaattttgactcggtcta 43747457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 25843437 - 25843494
Alignment:
Q  352 aaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||||||||||||||||||||| ||| |||||||||  ||||||| |||||||||||    
T  25843437 aaatcgccccctaagttttgcatctgtggcagttttggtccccaaggccaattttgac 25843494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 417
Target Start/End: Original strand, 3916465 - 3916566
Alignment:
Q  316 aagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtc 415  Q
    |||||| ||||||||||||||||        |||||||||||| | ||||||||||||| ||| ||||||||| |||||||   |||||||||| |||||    
T  3916465 aagttgtgattttggcccctaagaaaaaaaactacaaaatcgctcactaagttttgcatctgtggcagttttggcccccaaagtcaattttgactcggtc 3916564  T
Q  416 ta 417  Q
    ||    
T  3916565 ta 3916566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 4474150 - 4474205
Alignment:
Q  362 ctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||||  |||||||    
T  4474150 ctaagttttgcatttgtggcagttttgacccctaagaccaattttgattcggtcta 4474205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 406
Target Start/End: Original strand, 28944095 - 28944154
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaatttt 406  Q
    ||||| ||| ||||||||||||||||| |||| ||||||||| |||||||| ||||||||    
T  28944095 ctacataattgccccctaagttttgcacatgtagcagttttggcccccaaggccaatttt 28944154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 14340981 - 14340911
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||| | |||||||||||||||| ||| ||||||||| |||||||  | ||||||||| |||||||    
T  14340981 ctacaaaatagtcccctaagttttgcatttgtggcagttttggcccccaacgctaattttgactcggtcta 14340911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 19404641 - 19404579
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||||||||| ||| ||||||||||| ||||  |||||||| |||||||| |||||||||||    
T  19404641 ctacaaaatcgtcccttaagttttgcacatgtgacagttttggcccccaaggccaattttgac 19404579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 27178394 - 27178332
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||| | ||||||||||||||||| ||| | |||||||||||||||  |||||||||||    
T  27178394 ctacaaaaccaccccctaagttttgcatctgtggtagttttgacccccaatgccaattttgac 27178332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 28712709 - 28712663
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccc 393  Q
    |||||||||||||||||||||||||||  ||| ||||||||||||||    
T  28712709 ctacaaaatcgccccctaagttttgcaactgtagcagttttgacccc 28712663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 47189841 - 47189779
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||| ||| || |||||||||||| ||| ||||||||||||| ||||| ||||||||||    
T  47189841 ctacaaaaccgctccataagttttgcatttgtggcagttttgaccctcaagatcaattttgac 47189779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 409
Target Start/End: Original strand, 86653 - 86702
Alignment:
Q  360 ccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||||||||||||  ||| ||||||||| ||||||||||||||||||||    
T  86653 ccctaagttttgcacttgtagcagttttggcccccaagaccaattttgac 86702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 36677839 - 36677783
Alignment:
Q  272 taaaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgatttt 328  Q
    |||||||||||||||| |||| ||||| ||||  || ||||||||||||||||||||    
T  36677839 taaaatataggtttaatagcagttttaccccctaaatttttccaaagttgcgatttt 36677783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 36687918 - 36687862
Alignment:
Q  272 taaaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgatttt 328  Q
    |||||||||||||||| |||| ||||| |||  ||| ||||||||||||||||||||    
T  36687918 taaaatataggtttaatagcagttttagcccattaatttttccaaagttgcgatttt 36687862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 38177187 - 38177231
Alignment:
Q  290 gcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||    
T  38177187 gcaattttagccccttaactttcccaaagttgcgattttggcccc 38177231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 14856869 - 14856815
Alignment:
Q  280 aggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||||||| |||| || ||||||| ||||||| |||||| |||||||||||||||    
T  14856869 aggtttaatagcagttataaccccctaactttcccaaagatgcgattttggcccc 14856815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 22494556 - 22494606
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||| ||||||||||||||| ||| |||||||||||| |||||||| ||||    
T  22494556 ttaatagcaattttaaccccctaaattttccaaagttacgattttgacccc 22494606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 35359067 - 35359133
Alignment:
Q  351 aaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||||||||| ||||||| |||| ||||||||| |||| ||   |||||||||| |||||||    
T  35359067 aaaatcgccccctaatttttgcacatgtggcagttttggcccctaatgtcaattttgactcggtcta 35359133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 38958092 - 38958046
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccc 393  Q
    |||||||| ||||||||||||||||||  ||| ||||||||||||||    
T  38958092 ctacaaaaccgccccctaagttttgcaactgtagcagttttgacccc 38958046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 406
Target Start/End: Original strand, 43747302 - 43747405
Alignment:
Q  304 ataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagtttt-gacccccaagaccaa 402  Q
    ||||||||| | |||||||||||||||||||  | |       ||||||||||||||  |||||||||||  ||| |||||||| | |||||||||||||    
T  43747302 ataacttttacgaagttgcgattttggccccctaagaaaaaaactacaaaatcgcccaataagttttgcaattgtagcagttttggccccccaagaccaa 43747401  T
Q  403 tttt 406  Q
    ||||    
T  43747402 tttt 43747405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 331
Target Start/End: Complemental strand, 7218472 - 7218419
Alignment:
Q  278 ataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggc 331  Q
    |||||||||| |||||||||| |||| ||| ||||  |||||||||||||||||    
T  7218472 ataggtttaatagcaattttagccccctaatttttttaaagttgcgattttggc 7218419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 595923 - 595891
Alignment:
Q  96 gagtaaaccatcaaattcgtctacgactttgta 128  Q
    |||||||||||||||||||||| ||||||||||    
T  595923 gagtaaaccatcaaattcgtctccgactttgta 595891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 35359231 - 35359179
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagac 399  Q
    |||||||||||||| ||||||||||||  | | ||||||||| ||||||||||    
T  35359231 ctacaaaatcgccctctaagttttgcaactatggcagttttggcccccaagac 35359179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 406
Target Start/End: Original strand, 44585854 - 44585914
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagtttt-gacccccaagaccaatttt 406  Q
    |||||||| |||||||||| |||||||  ||| |||||||| | |||||||||||||||||    
T  44585854 ctacaaaaccgccccctaaattttgcaactgtagcagttttcgccccccaagaccaatttt 44585914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 305 - 415
Target Start/End: Complemental strand, 20112439 - 20112329
Alignment:
Q  305 taacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaatt 404  Q
    |||||||||||||||||||||||||||||| || |       |||||||| ||||||| ||||||||||||||| ||||||||| |||||||  ||||||    
T  20112439 taacttttccaaagttgcgattttggcccccaaagaaaaatactacaaaaccgcccccaaagttttgcatatgtggcagttttggcccccaaagccaatt 20112340  T
Q  405 ttgacgcggtc 415  Q
    ||||| |||||    
T  20112339 ttgactcggtc 20112329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 417
Target Start/End: Original strand, 2016799 - 2016928
Alignment:
Q  289 agcaattttaaccccataacttttccaaagttgcgattttggccc-ctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagtttt 387  Q
    |||| ||||| |||| ||||||||||||||||||||||||||||| | |||        ||||||||  ||||||||||||||||| |||| ||||||||    
T  2016799 agcagttttagccccctaacttttccaaagttgcgattttggccctcaaagaaaaaagactacaaaactgccccctaagttttgcacatgtggcagtttt 2016898  T
Q  388 gacccccaagaccaattttgacgcggtcta 417  Q
    | |||||||| ||||||||||| |||||||    
T  2016899 ggcccccaaggccaattttgactcggtcta 2016928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 409
Target Start/End: Original strand, 51362526 - 51362668
Alignment:
Q  271 ttaaaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccct----aaggnnnnnnnctacaaaatcgccccctaag 366  Q
    ||||| || |||||||| || | ||||| |||| ||||||||| ||||||||||||||||||||     |||        |||||||| |||||||||||    
T  51362526 ttaaattaaaggtttaatagtagttttagccccctaacttttctaaagttgcgattttggccccctaagaagaaaaaaaactacaaaaccgccccctaag 51362625  T
Q  367 ttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  51362626 ttttgcatatgtggcagttttggcccccaagaccaattttgac 51362668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 415
Target Start/End: Complemental strand, 1420865 - 1420723
Alignment:
Q  274 aaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttgg-cccctaaggnnnnnnnctacaaaatcgccccctaagttttgc 372  Q
    |||| |||| |||| |||| ||||| |||| ||||||| |||||||| ||||||||| ||||||||        |||||||| |||||| ||||||||||    
T  1420865 aaatttaggcttaatagcagttttagccccttaactttcccaaagttacgattttggtcccctaagaaaaagaactacaaaaccgccccataagttttgc 1420766  T
Q  373 atatgtcgcagttttgacccccaagaccaattttgacgcggtc 415  Q
    || ||| |||||| ||||||||||| ||||||||||| |||||    
T  1420765 atttgtggcagttatgacccccaaggccaattttgactcggtc 1420723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 44356644 - 44356583
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  44356644 tacaaaaccgccccctaagttttgcatatgtggcagttttggcccccaagaccaattttgac 44356583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 2654216 - 2654154
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||||||  |||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  2654216 ctacaaaactgccccctaagttttgcatatgtggcagttttgacccccaaggccaattttgac 2654154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 414
Target Start/End: Complemental strand, 14449586 - 14449464
Alignment:
Q  294 ttttaaccccataacttttccaaagttgcgattttggcccct-aaggnnnnnnn-ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacc 391  Q
    ||||| |||| |||||||||||||||||||||||||||| || ||||        |||||||| ||| ||||||||||||||| ||| ||||||||| ||    
T  14449586 ttttagccccctaacttttccaaagttgcgattttggcctcttaaggaaaaaaaactacaaaaccgctccctaagttttgcatttgtggcagttttggcc 14449487  T
Q  392 cccaagaccaattttgacgcggt 414  Q
    |||||| ||||||||||| ||||    
T  14449486 cccaaggccaattttgactcggt 14449464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 25909490 - 25909624
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttgg-cccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgca 382  Q
    |||| |||| |||||||||| ||||||||||||||||| |||||||| ||||||||        ||| |||| ||||||||||||||||||  ||| |      
T  25909490 ttaatagcagttttaaccccctaacttttccaaagttgtgattttggccccctaagaaaaaaaactataaaaccgccccctaagttttgcacttgtggag 25909589  T
Q  383 gttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||| |||||||| ||||||||||| |||||||    
T  25909590 gttttggcccccaaggccaattttgactcggtcta 25909624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 409
Target Start/End: Original strand, 2836912 - 2837028
Alignment:
Q  294 ttttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnn-ctacaaaatcgccccctaagttttgcatatgtcgcagttttgaccc 392  Q
    |||||||||| |||||||||||||| ||||||||||||||| || |        |||||||| ||||||||||||||||||| |||   ||||||| |||    
T  2836912 ttttaaccccctaacttttccaaagctgcgattttggcccccaaagaaaaaaaactacaaaaccgccccctaagttttgcatgtgtgagagttttggccc 2837011  T
Q  393 ccaagaccaattttgac 409  Q
    ||||| |||||||||||    
T  2837012 ccaaggccaattttgac 2837028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 417
Target Start/End: Complemental strand, 12719770 - 12719622
Alignment:
Q  271 ttaaaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnn-ctacaaaatcgccccctaagtt 368  Q
    |||||| | ||| |||| |||| |||||||||| ||||||| |||||||||  ||||||||||| ||||         |||||||| | |||||||||||    
T  12719770 ttaaaaaaaaggcttaatagcagttttaaccccctaactttcccaaagttgatattttggccccctaagaaaaaaaaactacaaaaccaccccctaagtt 12719671  T
Q  369 ttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||| ||| ||||||||| || ||||||||||||||||| |||||||    
T  12719670 ttgcatctgtggcagttttggcctccaagaccaattttgactcggtcta 12719622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 10059944 - 10059874
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| ||||||||||||||||||| ||| ||||||||| ||| |||| ||||||||||| |||||||    
T  10059944 ctacaaaaccgccccctaagttttgcatctgtggcagttttggccctcaaggccaattttgactcggtcta 10059874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 417
Target Start/End: Complemental strand, 53925064 - 53924928
Alignment:
Q  281 ggtttaaaagcaattttaaccccataacttttccaaagttgcgattttgg-cccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtc 379  Q
    ||||||| | |||||||| || | ||||||||| |||||||||||||||| ||||||||        ||| |||||| ||||||||||||||||| |||     
T  53925064 ggtttaataacaattttagcctcctaacttttctaaagttgcgattttggtcccctaag-aaaaaaactataaaatctccccctaagttttgcatttgtg 53924966  T
Q  380 gcagttttgacccccaagaccaattttgacgcggtcta 417  Q
     |||||||||||| ||||  |||||||||| |||||||    
T  53924965 acagttttgaccctcaaggtcaattttgactcggtcta 53924928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 417
Target Start/End: Complemental strand, 8965827 - 8965693
Alignment:
Q  278 ataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatg 377  Q
    ||||| |||| ||||||||||||||| ||| |||| ||||||||||||||||| |||||||        ||| |||| ||||||||||||||||||| ||    
T  8965827 ataggcttaatagcaattttaacccc-taattttttcaaagttgcgattttgg-ccctaag---aaaaactataaaaccgccccctaagttttgcatctg 8965733  T
Q  378 tcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    | |||||||||  ||||||   |||||||||| |||||||    
T  8965732 tggcagttttggtccccaatgtcaattttgactcggtcta 8965693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 21597649 - 21597579
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| || ||||||| |||||||||||| ||||||||| ||||||| || ||||||||| |||||||    
T  21597649 ctacaaaaccgtcccctaaattttgcatatgtggcagttttggcccccaaaactaattttgactcggtcta 21597579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 27978774 - 27978828
Alignment:
Q  363 taagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||| |||||||    
T  27978774 taagttttgcatttgtggcagttttgacccccaaggccaattttgactcggtcta 27978828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 31553489 - 31553419
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||||||||||||| |||| ||| | | ||||||||| |||||||| ||||||||||| |||||||    
T  31553489 ctacaaaatcgccccctaaattttacatctatggcagttttggcccccaaggccaattttgactcggtcta 31553419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 51371530 - 51371600
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||| ||||| |||||||||||||| | |||||||||||||||||   |||||||||| |||||||    
T  51371530 ctacaaaattgccccttaagttttgcatatatggcagttttgacccccaatgtcaattttgactcggtcta 51371600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 21957778 - 21957668
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaag-gnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgca 382  Q
    |||| |||| ||||| |||| |||||||||||||||||||||||||||| |||||         |||||||| |||| |||||||||||||  ||| |||    
T  21957778 ttaatagcagttttagccccctaacttttccaaagttgcgattttggcctctaagaaaaaaaaactacaaaaccgcctcctaagttttgcaactgtagca 21957679  T
Q  383 gttttgacccc 393  Q
    |||||||||||    
T  21957678 gttttgacccc 21957668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 419
Target Start/End: Complemental strand, 14061003 - 14060878
Alignment:
Q  295 tttaaccccataacttttccaaagttgcgattttggc-ccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccc 393  Q
    |||||| || ||| |||| |||||||||||||||||| |||||||        ||||||||  | |||||||||||| ||| ||| ||||||||| ||||    
T  14061003 tttaactccctaattttttcaaagttgcgattttggctccctaagaaaaaaaactacaaaactgtcccctaagttttacatctgtggcagttttggcccc 14060904  T
Q  394 caagaccaattttgacgcggtctatg 419  Q
    |||| | ||||||||| |||||||||    
T  14060903 caaggctaattttgactcggtctatg 14060878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 21322944 - 21322888
Alignment:
Q  361 cctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||||||||||||  ||||||||||||||||  ||||||||||| |||||||    
T  21322944 cctaagttttgcatatgtgacagttttgacccccaatgccaattttgactcggtcta 21322888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 43074825 - 43074773
Alignment:
Q  357 gccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||||||||||||| ||| ||||||||| |||||||| |||||||||||    
T  43074825 gccccctaagttttgcatctgtggcagttttggcccccaaggccaattttgac 43074773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 405
Target Start/End: Original strand, 53312284 - 53312412
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttgg-cccctaag-gnnnnnnnctacaaaatcgccccctaagttttgcatat 376  Q
    |||| |||| |||| ||||| |||| |||||||| ||||||||||||||||| ||||||||         |||||||| | |||||||| ||||||| ||    
T  53312284 taggcttaatagcatttttagccccctaactttttcaaagttgcgattttggccccctaagaaaaacaaactacaaaaccaccccctaaattttgcacat 53312383  T
Q  377 gtcgcagttttgacccccaagaccaattt 405  Q
    || ||||||||| |||||||| |||||||    
T  53312384 gtggcagttttggcccccaaggccaattt 53312412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 6207421 - 6207359
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||| ||||||||||||||||||| ||| ||| ||||| ||||||||  ||||||||||    
T  6207421 ctacaaaaccgccccctaagttttgcatttgtggcaattttggcccccaaggtcaattttgac 6207359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 6637310 - 6637240
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||||||||| |||||||||||| | | ||||||||| ||| |||  ||||||||||| |||||||    
T  6637310 ctacaaaatcgccccttaagttttgcatttctggcagttttggcccacaatgccaattttgactcggtcta 6637240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 8070631 - 8070685
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaag 338  Q
    |||| |||| |||||||||| |||||||||||||||||| | |||||||||||||    
T  8070631 ttaatagcagttttaaccccctaacttttccaaagttgcaactttggcccctaag 8070685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 395
Target Start/End: Original strand, 16292269 - 16292383
Alignment:
Q  280 aggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtc 379  Q
    |||||||| || |||||||||||| ||| ||||  |||||||||||||||| |||| |         |||||||||||||| |||||||||||| ||||     
T  16292269 aggtttaatagtaattttaaccccctaatttttttaaagttgcgattttggtcccttaa-aaaaaaactacaaaatcgccctctaagttttgcacatgtg 16292367  T
Q  380 gcagttttgaccccca 395  Q
    ||||||||| ||||||    
T  16292368 gcagttttggccccca 16292383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 19909176 - 19909230
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaag 338  Q
    |||| |||| |||||||||| |||||||  |||||||||||||||||||||||||    
T  19909176 ttaatagcagttttaaccccctaactttctcaaagttgcgattttggcccctaag 19909230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 1420538 - 1420586
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcc 332  Q
    |||| |||| ||||| |||| ||||||||||||||||||||||||||||    
T  1420538 ttaatagcagttttagccccctaacttttccaaagttgcgattttggcc 1420586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 20118133 - 20118089
Alignment:
Q  364 aagttttgcatatgtcgcagttttgacccccaagaccaattttga 408  Q
    |||||||||||||||  |||||||| |||||||||||||||||||    
T  20118133 aagttttgcatatgtgccagttttggcccccaagaccaattttga 20118089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 43074877 - 43074826
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccct 335  Q
    |||| |||||||||| |||| ||||||| ||||||||||||||||| |||||    
T  43074877 ttaatagcaattttagccccctaactttcccaaagttgcgattttgacccct 43074826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 417
Target Start/End: Original strand, 47999531 - 47999666
Alignment:
Q  282 gtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcg 380  Q
    |||||| |||| ||||||| || ||| |||| ||||||||||||||| ||||| ||||        |||||||| ||| || |||||||| ||| ||| |    
T  47999531 gtttaatagcagttttaactcc-taattttttcaaagttgcgatttttgccccctaagaaaaaaaactacaaaaccgctccataagttttacatctgtgg 47999629  T
Q  381 cagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||||||| ||| ||||||||||  |||||||    
T  47999630 cagttttgacccctaaggccaattttgattcggtcta 47999666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 337
Target Start/End: Original strand, 1571389 - 1571455
Alignment:
Q  271 ttaaaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaa 337  Q
    |||||||| ||| |||| |||| ||||||| || ||||||| | ||||||||||||||| |||||||    
T  1571389 ttaaaataaaggcttaatagcagttttaacaccctaactttacaaaagttgcgattttgccccctaa 1571455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 21871695 - 21871645
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||| |||||||||| |||| |||||||| |||||||||||||||| ||||    
T  21871695 ttaatagcaattttagccccctaactttttcaaagttgcgattttgacccc 21871645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 21927556 - 21927506
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||| |||||||||| |||| |||||||| |||||||||||||||| ||||    
T  21927556 ttaatagcaattttagccccctaactttttcaaagttgcgattttgacccc 21927506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 35615317 - 35615367
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||| |||| ||||| |||| ||||||||| ||||||||||||||||||||    
T  35615317 ttaatagcagttttagccccctaacttttctaaagttgcgattttggcccc 35615367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 53924814 - 53924872
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaatttt 406  Q
    ||||||| || |||||||||||||||  ||| ||||||||| ||||||||| |||||||    
T  53924814 tacaaaaccgtcccctaagttttgcaactgtagcagttttggcccccaagatcaatttt 53924872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 2017104 - 2017051
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcc 332  Q
    |||| |||| |||| ||||| |||||||||||| | ||||||||||||||||||    
T  2017104 taggcttaatagcagttttagccccataactttcctaaagttgcgattttggcc 2017051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 14060764 - 14060809
Alignment:
Q  289 agcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||| |||||||||| |||||||| |||||||||||||||| ||||    
T  14060764 agcagttttaaccccctaactttttcaaagttgcgattttgacccc 14060809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 50769363 - 50769416
Alignment:
Q  281 ggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    ||||||| |||| ||||| |||| ||||||| ||||||||||||||||| ||||    
T  50769363 ggtttaatagcagttttatccccctaactttcccaaagttgcgattttgccccc 50769416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 29697590 - 29697630
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttg 388  Q
    ||||||| ||||||||||||||||||| ||| |||||||||    
T  29697590 tacaaaaccgccccctaagttttgcatctgtggcagttttg 29697630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 50769595 - 50769551
Alignment:
Q  362 ctaagttttgcatatgtcgcagttttgacccccaagaccaatttt 406  Q
    ||||||||||||  ||| ||||||||| |||||||||||||||||    
T  50769595 ctaagttttgcaactgtagcagttttggcccccaagaccaatttt 50769551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 10727500 - 10727379
Alignment:
Q  289 agcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagtttt 387  Q
    |||| ||||| |||| ||||||||||||||||| |||||||||||| ||||        |||||||| ||||||||||||||||||| ||| ||||||||    
T  10727500 agcagttttagccccctaacttttccaaagttgtgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcatctgtggcagtttt 10727401  T
Q  388 gacccccaagaccaattttgac 409  Q
    | |||||||| |||||||||||    
T  10727400 ggcccccaaggccaattttgac 10727379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 409
Target Start/End: Complemental strand, 2853732 - 2853600
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc--taaggnnnnnnnctacaaaatcgccccctaagttttgcatat 376  Q
    |||| |||| |||| |||||||| | |||||||  ||||||||| |||||||||||  ||||        |||||||| ||||||||||||||| |||||    
T  2853732 taggcttaatagcagttttaacctcctaactttctcaaagttgcaattttggcccccctaagaaaaaaaactacaaaaccgccccctaagtttttcatat 2853633  T
Q  377 gtcgcagttttgacccccaagaccaattttgac 409  Q
    || ||||||||| |||||||| |||||||||||    
T  2853632 gtggcagttttggcccccaaggccaattttgac 2853600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 273 - 417
Target Start/End: Original strand, 26601453 - 26601597
Alignment:
Q  273 aaaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgc 372  Q
    |||| |||||||||| | || ||||| | || ||||||||  ||||||||||||||||||||||||         ||||||| | |||||||||||||||    
T  26601453 aaaaaataggtttaataacagttttatctccttaacttttttaaagttgcgattttggcccctaagaaaaaaaattacaaaaccaccccctaagttttgc 26601552  T
Q  373 atatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    || |||  ||| ||||  ||||||||||||||||||| |||||||    
T  26601553 atctgtgacagctttggtccccaagaccaattttgactcggtcta 26601597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 6036969 - 6036845
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcc-cctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgca 382  Q
    |||| |||| ||||| |||| ||||||||| |||||||||||||||||| ||||||        ||||||||  | |||||||||||||||||||| |||    
T  6036969 ttaatagcagttttagcccc-taacttttctaaagttgcgattttggcctcctaag-aagaaaactacaaaactgtcccctaagttttgcatatgtggca 6036872  T
Q  383 gttttgacccccaagaccaattttgac 409  Q
    ||||||||||||||  |||||||||||    
T  6036871 gttttgacccccaaagccaattttgac 6036845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 30349352 - 30349485
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttg-gcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgca 382  Q
    |||| |||| ||||| |||  ||||||| ||||||||||||||||| |||||||||        |||||||| |||||| |||||||||||| ||| | |    
T  30349352 ttaatagcagttttagccctctaactttcccaaagttgcgattttgagcccctaag-aaaaaaactacaaaaccgccccttaagttttgcatctgtggta 30349450  T
Q  383 gttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||||||||| |||||| |||| |||||||    
T  30349451 gttttgacccccaaggccaattatgactcggtcta 30349485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 32143326 - 32143395
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||| |||||| |||||||||||  ||| ||||||||| |||||||||||||||||||| |||||||    
T  32143326 tacaaaaccgccccttaagttttgcacctgtggcagttttggcccccaagaccaattttgactcggtcta 32143395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 26311651 - 26311581
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| | |||| |||||||||||||||| ||||||||| ||||||||  |||||||||| |||||||    
T  26311651 ctacaaaaccaccccttaagttttgcatatgtggcagttttggcccccaaggtcaattttgactcggtcta 26311581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 3812820 - 3812876
Alignment:
Q  360 ccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||| |||||||    
T  3812820 ccctaagttttgcatatgtggcagttttg-gccccaagaccaattttgacccggtcta 3812876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 266125 - 266237
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcag 383  Q
    |||| |||| ||||| ||||  |||||| |||||| ||| |||||||||||||||        ||||||||| ||||| |||||||||||  ||| ||||    
T  266125 ttaatagcagttttagcccccaaactttcccaaagctgcaattttggcccctaagaaaaataactacaaaattgccccttaagttttgcaactgtagcag 266224  T
Q  384 ttttgacccccaa 396  Q
    |||||||||||||    
T  266225 ttttgacccccaa 266237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 6036723 - 6036770
Alignment:
Q  359 cccctaagttttgcatatgtcgcagttttgacccccaagaccaatttt 406  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  6036723 cccctaagttttgcatatgtggcagttttggcccccaaggccaatttt 6036770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 396
Target Start/End: Complemental strand, 20475010 - 20474903
Alignment:
Q  289 agcaattttaaccccataacttttccaaagttgcgattttggcccct-aaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagtttt 387  Q
    |||||||||| |||| |||||||| ||||||||||||||||  |||| |||        |||||||| ||||||||||||||||||| ||| ||||||||    
T  20475010 agcaattttagccccctaactttttcaaagttgcgattttgatcccttaagaaaaaaaactacaaaa-cgccccctaagttttgcatctgtggcagtttt 20474912  T
Q  388 gacccccaa 396  Q
    | |||||||    
T  20474911 ggcccccaa 20474903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 33399783 - 33399921
Alignment:
Q  278 ataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggccc-ctaaggnnnnnnnctacaaaatcgccccctaagttttgcatat 376  Q
    ||||| |||| |||| ||||| |||| ||||||||||||||||||||||||||||| |||| |       |||||||| ||  ||||||||||| ||| |    
T  33399783 ataggcttaatagcagttttagcccc-taacttttccaaagttgcgattttggccctctaa-gaaaaaaactacaaaaccggaccctaagttttacattt 33399880  T
Q  377 gtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    || ||||||||| |||| |||  |||||||||| |||||||    
T  33399881 gtggcagttttggcccctaaggtcaattttgactcggtcta 33399921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 419
Target Start/End: Original strand, 1377275 - 1377346
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtctatg 419  Q
    |||||||||||||||||| |||||||| ||| || |||||| ||| |||| |  |||||||| |||||||||    
T  1377275 tacaaaatcgccccctaaattttgcatttgtggctgttttggccctcaaggcttattttgactcggtctatg 1377346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 419
Target Start/End: Original strand, 1385023 - 1385094
Alignment:
Q  348 tacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtctatg 419  Q
    |||||||||||||||||| |||||||| ||| || |||||| ||| |||| |  |||||||| |||||||||    
T  1385023 tacaaaatcgccccctaaattttgcatttgtggctgttttggccctcaaggcttattttgactcggtctatg 1385094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 5605903 - 5605958
Alignment:
Q  351 aaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaatttt 406  Q
    |||| ||||||||||||||| ||| ||| ||||||||||||| ||| |||||||||    
T  5605903 aaaaccgccccctaagttttacatttgtggcagttttgaccctcaaaaccaatttt 5605958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 12766462 - 12766403
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaatttt 406  Q
    |||||||| |||||| |||||||||||  ||| ||||||||| |||||||| ||||||||    
T  12766462 ctacaaaaccgccccttaagttttgcaactgtagcagttttggcccccaaggccaatttt 12766403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 2203185 - 2203238
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcc 332  Q
    |||| |||| |||||||||| | || ||||||| ||||||||||||||||||||    
T  2203185 taggcttaatagcaattttagctccctaactttcccaaagttgcgattttggcc 2203238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 418
Target Start/End: Original strand, 470 - 541
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtctat 418  Q
    |||||||| | ||||||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  470 ctacaaaaccaccccctaagttttacatatgtggcagttttggcccccaagaccaattttgactcggtctat 541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 417
Target Start/End: Complemental strand, 28786073 - 28785932
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccct---aaggnnnnnnnctacaaaatcgccccctaagttttgcata 375  Q
    |||| |||| |||| |||||||||||||||||||||||||||| ||||||||||| |   |||        ||||||||  ||||| ||||||||||||     
T  28786073 taggcttaatagcagttttaaccccataacttttccaaagttgtgattttggcccttaagaagaaaaaaaactacaaaactgccccataagttttgcatt 28785974  T
Q  376 tgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    | | |||||||||||||||||| | ||||||||| |||||||    
T  28785973 tatggcagttttgacccccaaggctaattttgactcggtcta 28785932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 373
Target Start/End: Complemental strand, 6792112 - 6792017
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttgg-cccctaaggnnnnnnnctacaaaatcgccccctaagttttgca 373  Q
    ||||||||| |||| ||||| |||| |||||||||||||||||||||||||| ||||||||        |||||||| ||||||||||||||||||    
T  6792112 taggtttaatagcagttttagccccctaacttttccaaagttgcgattttggtcccctaagaaaaaaaactacaaaaccgccccctaagttttgca 6792017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 409
Target Start/End: Original strand, 18504243 - 18504372
Alignment:
Q  281 ggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc--taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgt 378  Q
    ||||||| |||| |||||||||| ||||||||  ||||||| ||||||||||||  ||||        |||||||| |||||||||||||||||||||||    
T  18504243 ggtttaatagcagttttaacccc-taacttttttaaagttgtgattttggcccccctaagaaaaaatactacaaaaccgccccctaagttttgcatatgt 18504341  T
Q  379 cgcagttttgacccccaagaccaattttgac 409  Q
     ||||||||| || | ||| |||||||||||    
T  18504342 ggcagttttggcctctaaggccaattttgac 18504372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 417
Target Start/End: Complemental strand, 36580595 - 36580452
Alignment:
Q  274 aaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgca 373  Q
    ||||| |||||||| || | |||||||||  |||||||| ||||||||||||||||  || | | |       |||||||| ||||||||||||||||||    
T  36580595 aaataaaggtttaatagtagttttaaccctttaactttttcaaagttgcgattttgatccttcaagaaaaaagctacaaaaccgccccctaagttttgca 36580496  T
Q  374 tatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    | ||| ||||||||| |||||||   |||||||||| |||||||    
T  36580495 tttgtggcagttttggcccccaaagtcaattttgactcggtcta 36580452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 28472393 - 28472524
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgca 382  Q
    |||| |||| ||||| |||| ||||||||||||||||||||||||| |||| ||||        ||||||||||||||  |||||||||| ||||| |||    
T  28472393 ttaatagcagttttagcccc-taacttttccaaagttgcgattttgaccccctaag--aaaaaactacaaaatcgccctataagttttgcttatgtggca 28472489  T
Q  383 gttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||  |||||||||||||||||||  |||||||    
T  28472490 gttttcgcccccaagaccaattttgattcggtcta 28472524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 409
Target Start/End: Original strand, 15029085 - 15029190
Alignment:
Q  305 taacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaat 403  Q
    ||||||||||||||||||||||||| |||| |||         |||||||| |||||||||||||||||| |||| ||||||||| ||||||||  ||||    
T  15029085 taacttttccaaagttgcgattttgaccccctaataaaaaaaactacaaaaccgccccctaagttttgcacatgtggcagttttggcccccaaggtcaat 15029184  T
Q  404 tttgac 409  Q
    ||||||    
T  15029185 tttgac 15029190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 409
Target Start/End: Original strand, 28350183 - 28350245
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||| |||||||||||||||||   ||| ||||||||| ||||||||||||||||||||    
T  28350183 ctacaaaaccgccccctaagttttgcccctgtggcagttttggcccccaagaccaattttgac 28350245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 41243641 - 41243779
Alignment:
Q  278 ataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatg 377  Q
    ||||| |||| |||| ||||| |||| |||||||||||||||||| ||||| |||||  | |       |||||||| |||||| |||||||||||| ||    
T  41243641 ataggcttaatagcagttttagccccctaacttttccaaagttgcaattttagccccctaagaaaaaaactacaaaaccgcccc-taagttttgcatttg 41243739  T
Q  378 tcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    | ||||||||   ||||||| ||||||||||| |||||||    
T  41243740 tggcagtttttgtccccaaggccaattttgactcggtcta 41243779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 47909697 - 47909830
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcag 383  Q
    |||| |||| ||||| |||| ||||||| |||||||||||||||| |||||  | |       |||||||||||||||||||||||||||| ||| |||     
T  47909697 ttaatagcagttttagccccctaactttcccaaagttgcgattttagccccctaagaaaaaaactacaaaatcgccccctaagttttgcatctgtggcaa 47909796  T
Q  384 ttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||| |   ||||  |||||||||| |||||||    
T  47909797 ttttggctttcaaggtcaattttgactcggtcta 47909830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 417
Target Start/End: Complemental strand, 15107305 - 15107169
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatg 377  Q
    |||| |||| |||| ||||| |||| ||| |||||||||||| ||||||||||||| |||         |||||||| ||| ||||||||||||||| ||    
T  15107305 taggcttaatagcagttttacccccctaatttttccaaagttacgattttggccccctaa---aaaaaactacaaaaccgctccctaagttttgcatttg 15107209  T
Q  378 tcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    | ||||||||| || ||||  ||||||||||| |||||||    
T  15107208 tggcagttttggcctccaatgccaattttgactcggtcta 15107169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 3381929 - 3381975
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccc 393  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  3381929 ctacaaaaccgccccctaagttttgcatatgtggcagttttggcccc 3381975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 6726501 - 6726440
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||||| |||||||||||||||| |||| ||||||||| ||||||||  ||||||||||    
T  6726501 ctacaaaatcaccccctaagttttgcacatgtggcagttttg-cccccaaggacaattttgac 6726440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 20184984 - 20185054
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| |||| | ||||||||||||||||  |||||||| ||||||||  |||||||||| |||||||    
T  20184984 ctacaaaaccgcctcttaagttttgcatatgtgccagttttggcccccaaggtcaattttgactcggtcta 20185054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 23826086 - 23826156
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||||||| || ||| |||||||| ||| ||||||||| ||||||||| |||||||||  |||||||    
T  23826086 ctacaaaatcgctccttaaattttgcatttgtggcagttttggcccccaagatcaattttgattcggtcta 23826156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 8073957 - 8074002
Alignment:
Q  363 taagttttgcatatgtcgcagttttgacccccaagaccaattttga 408  Q
    |||||||||||||||| ||||||||| |||||||| ||||||||||    
T  8073957 taagttttgcatatgtggcagttttggcccccaaggccaattttga 8074002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 4049704 - 4049760
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccct 335  Q
    ||||||||| |||| ||||| |||  ||||||||| |||||||||||||||||||||    
T  4049704 taggtttaacagcagttttagcccactaacttttctaaagttgcgattttggcccct 4049760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 15348204 - 15348145
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaatttt 406  Q
    |||||||| ||||||||||||||||||   || ||||||||| |||||||| ||||||||    
T  15348204 ctacaaaaccgccccctaagttttgcaaccgtagcagttttggcccccaaggccaatttt 15348145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 19645117 - 19645058
Alignment:
Q  279 taggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaag 338  Q
    ||||||||| |||||||||  |||| |||||||  | |||||||||||||||||||||||    
T  19645117 taggtttaatagcaattttcgccccttaactttcacgaagttgcgattttggcccctaag 19645058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 40872394 - 40872351
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgac 390  Q
    |||||||| || |||||||||||||||||||| |||||||||||    
T  40872394 ctacaaaaccgtcccctaagttttgcatatgtggcagttttgac 40872351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 45717980 - 45718035
Alignment:
Q  362 ctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    ||||||||||||| |||  ||||||||||||| |||| |||||||||| |||||||    
T  45717980 ctaagttttgcatctgtgtcagttttgacccctaagatcaattttgactcggtcta 45718035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 417
Target Start/End: Original strand, 36903341 - 36903399
Alignment:
Q  359 cccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||||||| ||| ||| ||||||||| ||| |||| ||||||||||| |||||||    
T  36903341 cccctaagttttccatctgtggcagttttggccctcaaggccaattttgactcggtcta 36903399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 36903578 - 36903459
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcag 383  Q
    |||| |||| |||||||||| |||||||| ||| |||||||||||||||| |||         ||||||||  || ||||||||||||||  ||| ||||    
T  36903578 ttaatagcagttttaaccccctaactttttcaatgttgcgattttggcccttaa---aaaaaactacaaaactgcaccctaagttttgcaactgtagcag 36903482  T
Q  384 ttttgacccccaagaccaatttt 406  Q
    ||||  |||||||| ||||||||    
T  36903481 ttttagcccccaaggccaatttt 36903459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 3318331 - 3318367
Alignment:
Q  294 ttttaaccccataacttttccaaagttgcgattttgg 330  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  3318331 ttttagccccttaacttttccaaagttgcgattttgg 3318367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 5172771 - 5172711
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagtttt-gacccccaagaccaatttt 406  Q
    |||||||| ||||||||||||||||||  ||| |||||||| | |||||||| ||||||||    
T  5172771 ctacaaaaccgccccctaagttttgcaactgtagcagttttggtcccccaaggccaatttt 5172711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 18186765 - 18186713
Alignment:
Q  282 gtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||||| |||| ||||| |||| |||||||||||||||| |||||||| ||||    
T  18186765 gtttaatagcagttttagccccctaacttttccaaagttacgattttgacccc 18186713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Complemental strand, 39883527 - 39883499
Alignment:
Q  380 gcagttttgacccccaagaccaattttga 408  Q
    |||||||||||||||||||||||||||||    
T  39883527 gcagttttgacccccaagaccaattttga 39883499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 409
Target Start/End: Original strand, 19917 - 20042
Alignment:
Q  284 ttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccctaaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcag 383  Q
    |||| |||| |||||||||| ||| ||||  ||||||| ||||||||||||||||        ||||||||||| || ||||||||||||| ||| ||||    
T  19917 ttaatagcagttttaaccccctaaattttttaaagttgtgattttggcccctaagaaaaaaaactacaaaatcgtccactaagttttgcatctgtggcag 20016  T
Q  384 ttttgacccccaagaccaattttgac 409  Q
    ||||| |||||||  |||||||||||    
T  20017 ttttggcccccaaagccaattttgac 20042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 9478 - 9548
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| || |||||||||||||||||||| ||||||||  |||||||| ||||||||||| |||||||    
T  9478 ctacaaaaccgtcccctaagttttgcatatgtggcagttttagcccccaaggccaattttgactcggtcta 9548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 19276 - 19206
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||| |||||||||||||||||| |||| | ||||||| |||||||| ||||||||| | |||||||    
T  19276 ctacaaaaccgccccctaagttttgcacatgtggtagttttggcccccaaggccaattttggctcggtcta 19206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 76929 - 76998
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||  ||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| |||||||    
T  76929 ctacaaagccgccccctaagttttgcatttgtggcagttttg-cccccaaggccaattttgactcggtcta 76998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 145420 - 145490
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgacgcggtcta 417  Q
    |||||||  |||||| ||| |||||||| ||| ||||||||| |||||||| ||||||||||| |||||||    
T  145420 ctacaaagccgccccttaaattttgcatctgtggcagttttggcccccaaggccaattttgactcggtcta 145490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 3631 - 3692
Alignment:
Q  273 aaaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||| ||||| |||| |||| ||||| |||| ||||||| ||||||||||||||||||||||    
T  3631 aaaaaataggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 3692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 3631 - 3692
Alignment:
Q  273 aaaatataggtttaaaagcaattttaaccccataacttttccaaagttgcgattttggcccc 334  Q
    |||| ||||| |||| |||| ||||| |||| ||||||| ||||||||||||||||||||||    
T  3631 aaaaaataggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 3692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 406
Target Start/End: Original strand, 9568 - 9676
Alignment:
Q  294 ttttaaccccataacttttccaaagttgcgattttggcccc-taaggnnnnnnnctacaaaatcgccccctaagttttgcatatgtcgcagttttgaccc 392  Q
    ||||| |||| ||||||||||||||||| |||||||||||| |||         ||||||||||||||| |||||||||||  ||| | ||||||| |||    
T  9568 ttttagccccttaacttttccaaagttgtgattttggccccctaa-----aaaactacaaaatcgccccttaagttttgcaactgtagtagttttggccc 9662  T
Q  393 ccaagaccaatttt 406  Q
    |||||| |||||||    
T  9663 ccaagatcaatttt 9676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 9779 - 9722
Alignment:
Q  351 aaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    ||||||||||||||| ||||||||  || |||||||||  |||||||||||||||||||    
T  9779 aaaatcgccccctaaattttgcatcggtggcagttttg-gccccaagaccaattttgac 9722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 390
Target Start/End: Original strand, 93888 - 93931
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgac 390  Q
    |||||||| || |||||||||||||||||||| |||||||||||    
T  93888 ctacaaaaccgtcccctaagttttgcatatgtggcagttttgac 93931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 25146 - 25085
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgacccccaagaccaattttgac 409  Q
    |||||||| ||||||||||||||||||||||  | |||||||  |||||| ||||||||||||    
T  25146 ctacaaaaccgccccctaagttttgcatatgcggtagttttg-gccccaaaaccaattttgac 25085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 4261 - 4216
Alignment:
Q  347 ctacaaaatcgccccctaagttttgcatatgtcgcagttttgaccc 392  Q
    |||||||| ||||||||||||||||||  ||| |||||||||||||    
T  4261 ctacaaaaccgccccctaagttttgcaactgtagcagttttgaccc 4216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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