View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17760_low_5 (Length: 437)

Name: NF17760_low_5
Description: NF17760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17760_low_5
NF17760_low_5
[»] chr2 (4 HSPs)
chr2 (18-429)||(31764073-31764486)
chr2 (30-65)||(9496063-9496098)
chr2 (30-65)||(19336943-19336978)
chr2 (30-65)||(42149710-42149745)
[»] chr4 (3 HSPs)
chr4 (258-313)||(1607363-1607418)
chr4 (30-65)||(5306493-5306528)
chr4 (30-66)||(53540486-53540522)
[»] chr8 (5 HSPs)
chr8 (30-66)||(35914651-35914687)
chr8 (30-65)||(490532-490567)
chr8 (30-65)||(29520846-29520881)
chr8 (30-65)||(43904715-43904750)
chr8 (34-66)||(17491708-17491740)
[»] chr7 (6 HSPs)
chr7 (25-65)||(34341440-34341480)
chr7 (30-65)||(26741944-26741979)
chr7 (28-63)||(48515370-48515405)
chr7 (28-65)||(35713892-35713929)
chr7 (30-66)||(1569212-1569248)
chr7 (30-66)||(36101827-36101863)
[»] chr6 (2 HSPs)
chr6 (30-66)||(5096030-5096066)
chr6 (30-65)||(34555-34590)
[»] chr5 (2 HSPs)
chr5 (30-66)||(6889189-6889225)
chr5 (28-66)||(6859577-6859615)
[»] chr1 (7 HSPs)
chr1 (30-66)||(52532666-52532702)
chr1 (30-65)||(8796406-8796441)
chr1 (30-65)||(27072537-27072572)
chr1 (30-65)||(28090744-28090779)
chr1 (30-66)||(6084171-6084207)
chr1 (30-66)||(28511851-28511887)
chr1 (30-66)||(50257766-50257802)
[»] scaffold0010 (1 HSPs)
scaffold0010 (30-65)||(160374-160409)
[»] chr3 (5 HSPs)
chr3 (30-65)||(40116388-40116423)
chr3 (30-66)||(36304162-36304198)
chr3 (30-66)||(40991627-40991663)
chr3 (30-66)||(41482187-41482223)
chr3 (30-66)||(42510066-42510102)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 31764073 - 31764486
Alignment:
Q  18 agatatgtggtaaaattacgccataatgttctgtcataaaccatattttatattcaagtcttagctcattaatttttt-gatagnnnnnnnnaggtgttt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||| |||||        ||||||||    
T  31764073 agatatgtggtaaaattacgccataatgttctgtcataaaccatattttatattcaggtcat-gttcattaatttttttgatagttttttttaggtgttt 31764171  T
Q  117 ctctgccactagatatctgactatacaatatagaaaaattacattcacataaacaaatacagtnnnnnnntcacatcaattattttattcttgtatttgt 216  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||| |||||||||||    
T  31764172 ctctaccactagatatctgactatacaatatagaaaaattacatccacataaacaaatacagtaaaaaaatcacatcaattattttatccttgtatttgt 31764271  T
Q  217 gataaatgttaaacaatgtgagaca--cacaccgcccttgccctttgtgtttgtttgaggaacatttatcttttgtcatgattataaggttggaagttct 314  Q
    ||||||||||||||||||||| |||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  31764272 gataaatgttaaacaatgtgacacaaacacaccgcccttgccctttgtgtttgtttaaggaacatttatcttttgtcatgattataaggttggaagttcc 31764371  T
Q  315 ctgtcagtatctcactttaaatatgggctctgatgcaaacactgtttcatatactttatgtctagatcttcaaagatgctggatatgcatatctcaggga 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31764372 ctgtcagtatctcactttaaatatgggctctgatgcaaacactgtttcatatactttatgtctagatcttcaaagatgctggatatgcatatctcaggga 31764471  T
Q  415 atcctaagaattatg 429  Q
    |||||||| ||||||    
T  31764472 atcctaaggattatg 31764486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 9496098 - 9496063
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  9496098 aaattacgccataatgttctatcataaaccatattt 9496063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 19336943 - 19336978
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  19336943 aaattacgccataatgttctatcataaaccatattt 19336978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 42149710 - 42149745
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  42149710 aaattacgccataatgttctatcataaaccatattt 42149745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 1607418 - 1607363
Alignment:
Q  258 tttgtgtttgtttgaggaacatttatcttttgtcatgattataaggttggaagttc 313  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1607418 tttgtgtttgtttgaggaacatttttcttttgtcatgattataaggttggaagttc 1607363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 5306528 - 5306493
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||| |||||||||||||||||    
T  5306528 aaattacgccataatgttatgtcataaaccatattt 5306493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 53540522 - 53540486
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  53540522 aaattatgccataatgttctatcataaaccatatttt 53540486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 35914651 - 35914687
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    |||||||||||||||||||| ||||||||||||||||    
T  35914651 aaattacgccataatgttctatcataaaccatatttt 35914687  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 490567 - 490532
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  490567 aaattacgccataatgttctatcataaaccatattt 490532  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 29520881 - 29520846
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  29520881 aaattacgccataatgttctatcataaaccatattt 29520846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 43904715 - 43904750
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  43904715 aaattacgccataatgttctatcataaaccatattt 43904750  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 17491708 - 17491740
Alignment:
Q  34 tacgccataatgttctgtcataaaccatatttt 66  Q
    |||||||||||||||| ||||||||||||||||    
T  17491708 tacgccataatgttctatcataaaccatatttt 17491740  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 34341440 - 34341480
Alignment:
Q  25 tggtaaaattacgccataatgttctgtcataaaccatattt 65  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  34341440 tggtcaaattacgccataatgttctatcataaaccatattt 34341480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 26741944 - 26741979
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  26741944 aaattacgccataatgttctatcataaaccatattt 26741979  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 48515405 - 48515370
Alignment:
Q  28 taaaattacgccataatgttctgtcataaaccatat 63  Q
    |||||||||||||||||||||| |||||||||||||    
T  48515405 taaaattacgccataatgttctatcataaaccatat 48515370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 35713929 - 35713892
Alignment:
Q  28 taaaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  35713929 taaaattacgccataatgttctatcataaacaatattt 35713892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 1569248 - 1569212
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  1569248 aaattacgccgtaatgttctatcataaaccatatttt 1569212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 36101827 - 36101863
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  36101827 aaattacgtcataatgttctatcataaaccatatttt 36101863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 5096066 - 5096030
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    |||||||||||||||||||| ||||||||||||||||    
T  5096066 aaattacgccataatgttctatcataaaccatatttt 5096030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 34555 - 34590
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  34555 aaattacgccataatgttctatcataaaccatattt 34590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 6889225 - 6889189
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6889225 aaattacgccataatgttctatcataaaccatatttt 6889189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 6859615 - 6859577
Alignment:
Q  28 taaaattacgccataatgttctgtcataaaccatatttt 66  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  6859615 taaaattatgccataatgttctatcataaaccatatttt 6859577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 52532666 - 52532702
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    |||||||||||||||||||| ||||||||||||||||    
T  52532666 aaattacgccataatgttctatcataaaccatatttt 52532702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 8796441 - 8796406
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  8796441 aaattacgccataatgttctatcataaaccatattt 8796406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 27072537 - 27072572
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  27072537 aaattacgccataatgttctatcataaaccatattt 27072572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 28090744 - 28090779
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  28090744 aaattacgccataatgttctatcataaaccatattt 28090779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 6084207 - 6084171
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  6084207 aaattacgccatattgttctatcataaaccatatttt 6084171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 28511851 - 28511887
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  28511851 aaattacgccataatgttctatcataaaccatgtttt 28511887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 50257802 - 50257766
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  50257802 aaattacaccataatgttctatcataaaccatatttt 50257766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 160374 - 160409
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  160374 aaattacgccataatgttctatcataaaccatattt 160409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 40116388 - 40116423
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatattt 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  40116388 aaattacgccataatgttctatcataaaccatattt 40116423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 36304198 - 36304162
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    ||||||||||||||||| || ||||||||||||||||    
T  36304198 aaattacgccataatgtcctatcataaaccatatttt 36304162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 40991663 - 40991627
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  40991663 aaattacaccataatgttctatcataaaccatatttt 40991627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 41482187 - 41482223
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    |||||||||||||||||||| |||||||||| |||||    
T  41482187 aaattacgccataatgttctatcataaaccagatttt 41482223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 42510066 - 42510102
Alignment:
Q  30 aaattacgccataatgttctgtcataaaccatatttt 66  Q
    |||||||||||||||||||  ||||||||||||||||    
T  42510066 aaattacgccataatgttcaatcataaaccatatttt 42510102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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