View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17761_high_13 (Length: 493)

Name: NF17761_high_13
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17761_high_13
NF17761_high_13
[»] chr1 (4 HSPs)
chr1 (24-477)||(33764050-33764503)
chr1 (26-387)||(33768912-33769273)
chr1 (26-392)||(33772194-33772560)
chr1 (435-469)||(33772594-33772628)
[»] chr4 (3 HSPs)
chr4 (26-283)||(41238474-41238731)
chr4 (195-306)||(8349192-8349303)
chr4 (195-306)||(49465222-49465333)
[»] chr8 (3 HSPs)
chr8 (195-295)||(25224836-25224936)
chr8 (195-295)||(26168446-26168546)
chr8 (195-306)||(26396046-26396157)
[»] chr7 (2 HSPs)
chr7 (195-312)||(29462842-29462959)
chr7 (195-308)||(19844601-19844714)


Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 24 - 477
Target Start/End: Original strand, 33764050 - 33764503
Alignment:
Q  24 cgttacctgcatacttgtggtatttcttctggattaggaggatcaggactagtaaaaaatgcaattgtgtccctccagttagcagcagggtccctaaaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33764050 cgttacctgcatacttgtggtatttcttctggattaggaggatcaggactagtaaaaaatgcaattgtgtccctccagttagcagcagggtccctaaaaa 33764149  T
Q  124 gggtaccattagaaaaatatctgactttcttacttgtatcccttgtataaaatggtttccttgcatcaacttcttgttcatgaaacctacggattgcact 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33764150 gggtaccattagaaaaatatctgactttcttacttgtatcccttgtataaaatggtttccttgcatcaacttcttgttcatgaaacctacggattgcgct 33764249  T
Q  224 agtcatctcatccaaaacactaactggaataccgtgattaatcacttggaaaaatccccactccttgcatgcactacgaattttgtcaaccacctcaaca 323  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33764250 agtcatctcatccaaaacactaaccggaataccatgattaatcacttggaaaaatccccactccttgcatgcactacgaattttgtcaactacctcaaca 33764349  T
Q  324 tgcaaacatggattagtgttcatacctttaagatctatgatgggaacactcaacttggaagatgagtcaatttgtaaggtagtttcatgagtgttgtttt 423  Q
    |||||||||||||||||||||||| ||| ||| || |||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  33764350 tgcaaacatggattagtgttcatatcttgaaggtcaatgatggggacacacaactttgaagatgagtcaatttgtaagatagtttcatgagtgttgtttt 33764449  T
Q  424 tcaggctcgatttgggaaaatggaacatacgtgggatctttgtcacgcatgttc 477  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  33764450 tcaggcttgatttaggaaaatggaacatacgtgggatctttgtcacgcatgttc 33764503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 26 - 387
Target Start/End: Original strand, 33768912 - 33769273
Alignment:
Q  26 ttacctgcatacttgtggtatttcttctggattaggaggatcaggactagtaaaaaatgcaattgtgtccctccagttagcagcagggtccctaaaaagg 125  Q
    ||||||||||||||| ||||||||||||||||  |||||||  |||||   |||||||| || || |||||||||||| |||||||||||| ||||||||    
T  33768912 ttacctgcatacttgcggtatttcttctggatcgggaggattgggacttacaaaaaatgaaagtgagtccctccagttggcagcagggtccgtaaaaagg 33769011  T
Q  126 gtaccattagaaaaatatctgactttcttacttgtatcccttgtataaaatggtttccttgcatcaacttcttgttcatgaaacctacggattgcactag 225  Q
     |||||||||| |||||||  |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||     
T  33769012 ctaccattagagaaatatcgaactttcttacttttatcccttgtataaaatggtttccttgcatcagcatcttgttcatgaaacctacggattccactaa 33769111  T
Q  226 tcatctcatccaaaacactaactggaataccgtgattaatcacttggaaaaatccccactccttgcatgcactacgaattttgtcaaccacctcaacatg 325  Q
    ||||||||||||||||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| || ||||  |||||| ||||    
T  33769112 tcatctcatccaaaacaataaccggaataccatgattaatcacttgaaaaaatccccactccttgcatgcacttcgaatcttctcaagtacctcagcatg 33769211  T
Q  326 caaacatggattagtgttcatacctttaagatctatgatgggaacactcaacttggaagatg 387  Q
     |||||||||| |||||| ||| ||| ||| |||||||| || ||||| |||||||||||||    
T  33769212 taaacatggatcagtgtttatatcttgaaggtctatgatagggacactgaacttggaagatg 33769273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 26 - 392
Target Start/End: Original strand, 33772194 - 33772560
Alignment:
Q  26 ttacctgcatacttgtggtatttcttctggattaggaggatcaggactagtaaaaaatgcaattgtgtccctccagttagcagcagggtccctaaaaagg 125  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||   | |||| | ||||||||||||||||||||||||| ||| | ||||||||    
T  33772194 ttacctgcatacttgaggtatttcttctggattaggaggatcaggacttacataaaaagaaattgtgtccctccagttagcagcatggttcttaaaaagg 33772293  T
Q  126 gtaccattagaaaaatatctgactttcttacttgtatcccttgtataaaatggtttccttgcatcaacttcttgttcatgaaacctacggattgcactag 225  Q
     | ||||| || |||||||| |||||||||||||||||||||||||| |||||||||||| | ||  |||||||||||||||||||||||||| |||||     
T  33772294 cttccattggagaaatatctaactttcttacttgtatcccttgtatagaatggtttcctttcctcggcttcttgttcatgaaacctacggattccactaa 33772393  T
Q  226 tcatctcatccaaaacactaactggaataccgtgattaatcacttggaaaaatccccactccttgcatgcactacgaattttgtcaaccacctcaacatg 325  Q
    |||||||||||||||| ||| |||||||||| |||||||||||||| ||| ||||||| ||    || ||||| ||||| |||||||  |||||| ||||    
T  33772394 tcatctcatccaaaacgctatctggaataccatgattaatcacttgaaaacatccccattcacgacaagcacttcgaatcttgtcaagtacctcagcatg 33772493  T
Q  326 caaacatggattagtgttcatacctttaagatctatgatgggaacactcaacttggaagatgagtca 392  Q
    ||||||||| || ||||  |||  || ||| ||||||||||| ||| | ||||||||||||| ||||    
T  33772494 caaacatgggtttgtgtgtatattttgaaggtctatgatggggacattgaacttggaagatgggtca 33772560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 469
Target Start/End: Original strand, 33772594 - 33772628
Alignment:
Q  435 ttgggaaaatggaacatacgtgggatctttgtcac 469  Q
    |||||| ||||||||||||||||||||||||||||    
T  33772594 ttgggataatggaacatacgtgggatctttgtcac 33772628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 41238731 - 41238474
Alignment:
Q  26 ttacctgcatacttgtggtatttcttctggattaggaggatcaggactagtaaaaaatgcaattgtgtccctccagttagcagcagggtccctaaaaagg 125  Q
    |||||| ||||||  |||||  ||||||||||| ||| ||| |||| | | |  |||||||||||| |||||||| ||||||||   ||||||||| |      
T  41238731 ttacctacatactgctggtaactcttctggattgggaagattaggatttgcagcaaatgcaattgtatccctccaattagcagccatgtccctaaacaac 41238632  T
Q  126 gtaccattagaaaaatatctgactttcttacttgtatcccttgtataaaatggtttccttgcatcaacttcttgttcatgaaacctacggattgcactag 225  Q
     | |||||||| ||||| || |||||||||  | |||| ||||  ||||| |||||| | || ||| | |||||||||||||| ||||  ||| || |      
T  41238631 ttcccattagagaaatacctaactttcttatctttatctcttgagtaaaagggtttcttagcttcagcatcttgttcatgaaatctacaaattccattga 41238532  T
Q  226 tcatctcatccaaaacactaactggaataccgtgattaatcacttggaaaaatcccca 283  Q
    |||||||||||||||||  || ||||||||| ||||| ||||||||||||||||||||    
T  41238531 tcatctcatccaaaacatgaagtggaataccatgattgatcacttggaaaaatcccca 41238474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 306
Target Start/End: Complemental strand, 8349303 - 8349192
Alignment:
Q  195 tcttgttcatgaaacctacggattgcactagtcatctcatccaaaacactaactggaataccgtgattaatcacttggaaaaatccccactccttgcatg 294  Q
    |||||||||||||||||||| ||| ||  | |  | |||||||| ||| |||  ||||| || |||||||||||||  ||||||||||||||||||||||    
T  8349303 tcttgttcatgaaacctacgaattccatcaattgtttcatccaatacattaatgggaattccatgattaatcactttaaaaaatccccactccttgcatg 8349204  T
Q  295 cactacgaattt 306  Q
    || | |||||||    
T  8349203 cagttcgaattt 8349192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 306
Target Start/End: Original strand, 49465222 - 49465333
Alignment:
Q  195 tcttgttcatgaaacctacggattgcactagtcatctcatccaaaacactaactggaataccgtgattaatcacttggaaaaatccccactccttgcatg 294  Q
    |||||||||||||| ||||||||| ||  | |||| |||||||| ||  |||  |||||  | ||||||||||| || |||||||||||||| | |||||    
T  49465222 tcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatccccactcatggcatg 49465321  T
Q  295 cactacgaattt 306  Q
    |||| |||||||    
T  49465322 cacttcgaattt 49465333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 25224836 - 25224936
Alignment:
Q  195 tcttgttcatgaaacctacggattgcactagtcatctcatccaaaacactaactggaataccgtgattaatcacttggaaaaatccccactccttgcatg 294  Q
    |||||||||||||||||||| ||| || || |  | |||||||| ||| ||| |||||| || |||||||||||||| ||||||||| ||||||||||||    
T  25224836 tcttgttcatgaaacctacgaattccattaattgtttcatccaatacattaattggaattccatgattaatcacttgaaaaaatccctactccttgcatg 25224935  T
Q  295 c 295  Q
    |    
T  25224936 c 25224936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 26168546 - 26168446
Alignment:
Q  195 tcttgttcatgaaacctacggattgcactagtcatctcatccaaaacactaactggaataccgtgattaatcacttggaaaaatccccactccttgcatg 294  Q
    |||||||||||||||||||| ||| ||  | |  | |||||||| |||  ||  ||||| || |||||||||||||| ||||||||||||||||||||||    
T  26168546 tcttgttcatgaaacctacgaattccatcaattgtttcatccaatacatcaatgggaattccatgattaatcacttgaaaaaatccccactccttgcatg 26168447  T
Q  295 c 295  Q
    |    
T  26168446 c 26168446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 306
Target Start/End: Complemental strand, 26396157 - 26396046
Alignment:
Q  195 tcttgttcatgaaacctacggattgcactagtcatctcatccaaaacactaactggaataccgtgattaatcacttggaaaaatccccactccttgcatg 294  Q
    |||||||||||||||||||| | | ||  |  ||| |||||||| |||| ||  |||||  | |||||||||||||| ||||||||||||||||| ||||    
T  26396157 tcttgttcatgaaacctacgaaatccatcaagcatttcatccaatacacaaatgggaatttcatgattaatcacttgaaaaaatccccactccttacatg 26396058  T
Q  295 cactacgaattt 306  Q
    || | |||||||    
T  26396057 cagttcgaattt 26396046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 312
Target Start/End: Complemental strand, 29462959 - 29462842
Alignment:
Q  195 tcttgttcatgaaacctacggattgcactagtcatctcatccaaaacactaactggaataccgtgattaatcacttggaaaaatccccactccttgcatg 294  Q
    ||||||||||||||||||| |||| ||  | |||| |||||||| ||| |||  |||||  | ||||||||||| || |||||||||||||| | |||||    
T  29462959 tcttgttcatgaaacctacagattccatcaatcatttcatccaagacaataataggaatttcatgattaatcacctgaaaaaatccccactcatggcatg 29462860  T
Q  295 cactacgaattttgtcaa 312  Q
    |||| ||||||| |||||    
T  29462859 cacttcgaatttggtcaa 29462842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 308
Target Start/End: Complemental strand, 19844714 - 19844601
Alignment:
Q  195 tcttgttcatgaaacctacggattgcactagtcatctcatccaaaacactaactggaataccgtgattaatcacttggaaaaatccccactccttgcatg 294  Q
    ||||||||||||||  |||||||| ||  | ||||||||||||| ||| | |  |||||  | ||||||||||| || |||||||||||||| |  ||||    
T  19844714 tcttgttcatgaaagttacggattccatgaatcatctcatccaatacattgatgggaatttcatgattaatcacctgaaaaaatccccactcatgacatg 19844615  T
Q  295 cactacgaattttg 308  Q
    |||| |||||||||    
T  19844614 cacttcgaattttg 19844601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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