View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_high_35 (Length: 351)
Name: NF17761_high_35
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 44736409 - 44736069
Alignment:
| Q |
1 |
attatctcagcggtaccatcaagaccatcattgagagagataactggtacatgtcgttatcattttagtgacagagagagggaactcttgtcgcgtcaca |
100 |
Q |
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| T |
44736409 |
attatctcagcggtaccatcaagaccatcattgagagagataactggtacatgtcgttatcattttagtgacagagagagggaactcttgtcgcgtcaca |
44736310 |
T |
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| Q |
101 |
aatgccttgttcactagtattttgaaacttctatattgaagtttgaattttgaaatcaaagatgttatttgttaagattttctctgagatactacttttt |
200 |
Q |
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| T |
44736309 |
aatgccttgttcactagtattttgaaacttctatattgaagtttgagttttgaaatcaaggatgttatttgttaagattttctctgagatactacttttt |
44736210 |
T |
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| Q |
201 |
tgaatgccagtttacaaatgtgtattttctcattagtgtatgtctgataatcacctaagtatttgtgcaagatattttatataatgcataaaatccagct |
300 |
Q |
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| T |
44736209 |
tgaatgccagtttacaaatgtgtattttctcattagtgcatgtctgataatcacctaagtatttgtgcaagatattttatataatgcataaaatccagct |
44736110 |
T |
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| Q |
301 |
agtggaaaaatcatccaatttttcctctcctaggttctctg |
341 |
Q |
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| T |
44736109 |
agtggaaaaatcatccaatttttcctctcctaggttctctg |
44736069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 18315492 - 18315549
Alignment:
| Q |
54 |
tcgttatcattttagtgacagagagagggaactcttgtcgcgtcacaaatgccttgtt |
111 |
Q |
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| T |
18315492 |
tcgttattgtttcagtgacagagaaagggaactcttctcgcgtcaaagatgccttgtt |
18315549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 32151157 - 32151049
Alignment:
| Q |
19 |
tcaagaccatcattgagagagataactggtacatgtcgttatcattttagtgacagagagagggaactcttgtcgcgtcacaaatgccttgttcactagt |
118 |
Q |
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||||| |||||||||||| ||||||||| | || ||||||| |||| ||||||| | | ||| ||||||| | |||||| |||||||||| ||||| |
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| T |
32151157 |
tcaaggccatcattgagaaagataactgctccacctcgttatgatttcagtgacaaaaaaaggaaactcttcttgcgtcatggatgccttgtttcctagt |
32151058 |
T |
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| Q |
119 |
attttgaaa |
127 |
Q |
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| T |
32151057 |
agtttgaaa |
32151049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 1545630 - 1545533
Alignment:
| Q |
18 |
atcaagaccatcattgagagagataactggtacatgtcgttatcattttagtgacagagagagggaactcttgtcgcgtcacaaatgccttgttcact |
115 |
Q |
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| T |
1545630 |
atcaaggccatcattgagaagtataactgctccagctccttatcattttagtgacactgagagggaactcttctctcgtcaaaattgccctgttcact |
1545533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 173
Target Start/End: Original strand, 45245384 - 45245482
Alignment:
| Q |
75 |
agagagggaactcttgtcgcgtcacaaatgccttgttcactagtattttgaaacttctatattgaagtttgaattttgaaatcaaagatgttatttgtt |
173 |
Q |
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|||| ||||||||||||||||||| |||||||||| |||| ||| ||||||| || || | ||||||||| |||||| | |||||||| |||||| |
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| T |
45245384 |
agagcgggaactcttgtcgcgtcaaggatgccttgtttgctagcattctgaaactgctctacttaagtttgaactttgaagtgtaagatgttttttgtt |
45245482 |
T |
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