View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_high_4 (Length: 596)
Name: NF17761_high_4
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 24624677 - 24624092
Alignment:
| Q |
1 |
tgggggttcatatcatcctttgcaactctttttggtttcctagacaggttgagtatgtaattgcgtccttctagaaaaagagatctagaaatctcctcaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24624677 |
tgggtgttcatatcatcctttgcaactctttttggtttcctagacaggttgagtatgtaattgcgtccttctagaaaaagagatcttgaaatctcctcaa |
24624578 |
T |
|
| Q |
101 |
gattcaaattctcccagttcatctgctgataaaaagcacatgatgcatctccttagaggttgatcgaatttcctagatattatttatggcaacttgatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24624577 |
gattcaaattctcccagttcatctgctgataaaaagcacatgatgcatctccttggaggttgatcgaatttcctagatattatttatggcaacttgatca |
24624478 |
T |
|
| Q |
201 |
aaacggatgtttcgtccacgaaccacattggtgaaagaaaagggttcatcatcggatggaagagcattgacatatatctcccggatcacatcattattta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24624477 |
aaacggatgtttcgtccacgaaccacattggtgaaagaaaagggttcatcatcggatggaagagcattgacatatatctcccggattacatcattattta |
24624378 |
T |
|
| Q |
301 |
gaagcttgggaagatctaccaacttatcccaattcctggtgtggattatt--tgctatgcccatatacggtcctttttctttgattcagaattccttctc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24624377 |
gaagcttgggaagatctaccaacttatcccaattcctggtgtagattatttgtgctatgcccatacacggtcctttttctttgattcagaattccttctc |
24624278 |
T |
|
| Q |
399 |
cacccacatttcccgctccaccaactctctgcattgttcttgttggtaagtaccttcgaattttaaaggataaaatggttcttgtgcacgtgcccttgaa |
498 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24624277 |
cacccacatttcccgctccaccaacgttctgcattgttcttgttggtaagtacctttgaattttaaaggataaaatggttcttgtgcgcgtgcccttgaa |
24624178 |
T |
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| Q |
499 |
gaactagctgcattaattcttttcaccttggacatacaagaagtcttagatacttctgatgaggaaataatttgctattttctgat |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24624177 |
gaactagctgcattaattcttttcaccttggacatacaagaagtcttagatacttctgatgaggaaataatttgctattttctgat |
24624092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 518 - 584
Target Start/End: Complemental strand, 9439222 - 9439156
Alignment:
| Q |
518 |
ttttcaccttggacatacaagaagtcttagatacttctgatgaggaaataatttgctattttctgat |
584 |
Q |
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|||||||||||||||||||||| ||||| || ||||||||||| ||| |||||||| || ||||||| |
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| T |
9439222 |
ttttcaccttggacatacaagaggtcttggacacttctgatgacgaagtaatttgcaatgttctgat |
9439156 |
T |
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