View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_high_5 (Length: 574)
Name: NF17761_high_5
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 13 - 558
Target Start/End: Original strand, 46864853 - 46865399
Alignment:
| Q |
13 |
atttttggcctttcattatatttcaccatcctccatgggcaatactgtcactgtgttacatataacttgaatgaagttctgtattttcctgtcaacccca |
112 |
Q |
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| T |
46864853 |
atttttggcctttcattatatttcaccatcctccatggacaataccgtcactgtgttacatataacttgaatgaagttctgtattttcctgtcaacccca |
46864952 |
T |
|
| Q |
113 |
ttaggaatttctatttgattgaaatgtctagatttcataaattaaaatagttaatcatctcaattttataatggatggttgaaagtttgtgtttgttact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46864953 |
ttaggaatttctatttgattgaaatgtctagatttcataaattaaaatagttaatcatctcaattttataatggatggttgaaagtttgtgtttgttact |
46865052 |
T |
|
| Q |
213 |
tgactgaaattttaatagtttggagtaatcttctgttaagcattggttctcttcgtaacctttcaggggccgtactccatactcataccaaatattcgtt |
312 |
Q |
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| T |
46865053 |
tgactgaaattttaatagtttggagtaatcttctgttaagcatgggttctcttcgtaacctttcaggggccgtactccatactcgtaccaaatattcgtt |
46865152 |
T |
|
| Q |
313 |
agg-cctcgtggttacacaagtaggtactaaaattgcttttcagatatnnnnnnnngttggatagtactctactttggtatgtgtcgatggatactctac |
411 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46865153 |
aggtcctcgtggttacacaagtaggtaccaaaattgcttttcagatataaaaaaaagttggatagtactctactttggtatgtgtcgatggatactctac |
46865252 |
T |
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| Q |
412 |
ttttcatatatggttaacgcagctgcagtgttagagactaaaaaaccttaacgtctctgcaacattcgtggtcactgtccttnnnnnnnnnnnnntgggt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
46865253 |
ttttcatatatggttaacgcagctgcagtgttagagactaaaaaaccttaacgtctctgcaacatttgtggtcactgtcctttatatatatatattgggt |
46865352 |
T |
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| Q |
512 |
gtgattacttgtattcacatattgtgaacaaagaatacaagatgatt |
558 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
46865353 |
gtgattacttgtatttacatattgtgaacaaagaattcaagatgatt |
46865399 |
T |
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