View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17761_high_53 (Length: 284)
Name: NF17761_high_53
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_high_53 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 151 - 278
Target Start/End: Complemental strand, 9645462 - 9645335
Alignment:
| Q |
151 |
ttacatacaagttgcatgtaagaaacgtgtttaaggtgagtgttagattccaaagcgttgagaagaagctgtttccatcctatgctccccattcccaatt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9645462 |
ttacatacaagttgcatgtaagaaacgtgtttaaggtgagtgttagattccaaagcgttgagaagaagctgtttccatgctatgctccccattcccaatt |
9645363 |
T |
|
| Q |
251 |
cttcctatgccgtttcttcttctgtacc |
278 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
9645362 |
cttcctatgccgtttcttcgtctgtacc |
9645335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 9645617 - 9645490
Alignment:
| Q |
7 |
gttatcagagttatcttgaagtcctctgaaaacgacggtgcggttcgaagggtttccattggttcctacggttgtctgaaacaaagatg--nnnnnnnnt |
104 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| || |||||||||||||| |||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
9645617 |
gttatcagtgttatcttgaaatcctctgaaaactacagtgcggttcgaaggttttccattggttcctacggttgcctgaaacaaagatgaaaaaaaaaat |
9645518 |
T |
|
| Q |
105 |
cgtaaaaatgaattaaagataattaaat |
132 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
9645517 |
cgtaaaaatgaattaaagataattaaat |
9645490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University