View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17761_high_56 (Length: 270)

Name: NF17761_high_56
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17761_high_56
NF17761_high_56
[»] chr6 (8 HSPs)
chr6 (18-262)||(30573153-30573397)
chr6 (25-143)||(30569890-30570007)
chr6 (20-143)||(30569588-30569711)
chr6 (93-178)||(30569798-30569883)
chr6 (26-134)||(30573342-30573449)
chr6 (153-262)||(30573107-30573217)
chr6 (202-250)||(30569886-30569934)
chr6 (183-257)||(30569570-30569645)
[»] chr4 (2 HSPs)
chr4 (32-131)||(38419621-38419720)
chr4 (32-138)||(38436104-38436210)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 30573153 - 30573397
Alignment:
Q  18 acctatctcccctgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctccatggtgacattgaggcagcatcatatttgatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30573153 acctatctcccctgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctccatggtgacattgaggcagcatcatatttgatt 30573252  T
Q  118 ctccttgcaaagaaacctatataatcttatcggtgtgacggaatagctgaagaagttcgagtaaattgacaaaggcaaagtccctattgcccctgctgat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30573253 ctccttgcaaagaaacctatataatcttatcggtgtgacggaatagctgaagaagttcgagtaaattgacaaaggcaaagtccctattgcccctgctgat 30573352  T
Q  218 cttgatttaaaggaacttttaaagtgaaggcttcagtgaacgagc 262  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  30573353 cttgatttaaaggaacttttaaagtgaaggcttcattgaaagagc 30573397  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 30569890 - 30570007
Alignment:
Q  25 tcccctgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctccatggtgacattgaggcagcatcatatttgattctccttg 124  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||  |||||||||||||||  ||||||| |||| ||| |||||    
T  30569890 tcccctgctgatcttgatttagaggaacttctaaa-gtgaaggctttattgaaagagctagatggtgacattgaggtcgcatcatctttgtttcgccttg 30569988  T
Q  125 caaagaaacctatataatc 143  Q
    |||||||||||||||||||    
T  30569989 caaagaaacctatataatc 30570007  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 30569588 - 30569711
Alignment:
Q  20 ctatctcccctgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctccatggtgacattgaggcagcatcatatttgattct 119  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  ||||||| || |||||| |||||||| || |    
T  30569588 ctatttcccttgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagtactccagagtgacatagaagcagcaacatatttgctttt 30569687  T
Q  120 ccttgcaaagaaacctatataatc 143  Q
    |||| | |||||||||||||||||    
T  30569688 cctttcgaagaaacctatataatc 30569711  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 30569798 - 30569883
Alignment:
Q  93 cattgaggcagcatcatatttgattctccttgcaaagaaacctatataatcttatcggtgtgacggaatagctgaagaagttcgag 178  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||   |||||| ||||||||||||||| |||||    
T  30569798 cattgaggcagcatcatatttgcttctccttgcaaagaaacctatataatcttatgcttgtgaccgaatagctgaagaaggtcgag 30569883  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 30573342 - 30573449
Alignment:
Q  26 cccctgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctccatggtgacattgaggcagcatcatatttgattctccttgc 125  Q
    |||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||  |||||||| ||||||  | ||||| |||| ||||||||||    
T  30573342 cccctgctgatcttgatttaaaggaacttttaaa-gtgaaggcttcattgaaagagctagatggtgacgttgaggtcgaatcatctttgtttctccttgc 30573440  T
Q  126 aaagaaacc 134  Q
    |||||||||    
T  30573441 aaagaaacc 30573449  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 30573107 - 30573217
Alignment:
Q  153 tgacggaatagctgaagaagttcgagtaaattgacaaaggcaaagtccctattgcccctgctgatcttgatttaaaggaactt-ttaaagtgaaggcttc 251  Q
    |||||||| ||||||||||| | ||  || |||||||||| ||| | |||||  |||||||||||||||||||| | |||||| | ||||||||||||||    
T  30573107 tgacggaagagctgaagaaggtggatgaagttgacaaaggtaaattacctatctcccctgctgatcttgatttagaagaacttctaaaagtgaaggcttc 30573206  T
Q  252 agtgaacgagc 262  Q
    | |||| ||||    
T  30573207 attgaaagagc 30573217  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 30569886 - 30569934
Alignment:
Q  202 tattgcccctgctgatcttgatttaaaggaacttttaaagtgaaggctt 250  Q
    |||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  30569886 tatttcccctgctgatcttgatttagaggaacttctaaagtgaaggctt 30569934  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 30569570 - 30569645
Alignment:
Q  183 ttgacaaaggcaaagtccctattgcccctgctgatcttgatttaaaggaactt-ttaaagtgaaggcttcagtgaa 257  Q
    |||||||||| |||||| ||||| ||| |||||||||||||||| | |||||| | ||||||||||||||| ||||    
T  30569570 ttgacaaaggtaaagtctctatttcccttgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaa 30569645  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 38419621 - 38419720
Alignment:
Q  32 ctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctccatggtgacattgaggcagcatcatatttgattctccttgcaaagaa 131  Q
    |||||||||| |||||||||||||||||||||||| | ||| ||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  38419621 ctgatcttgacttagaagaacttctaaaagtgaagacatcactgaaagatctccatggtaacattgaggcagcatcatctttgcttctccttgcaaagaa 38419720  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 38436104 - 38436210
Alignment:
Q  32 ctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctccatggtgacattgaggcagcatcatatttgattctccttgcaaagaa 131  Q
    |||||||| | ||| |||||||||||||||||||| ||||  |||||||||| ||||||||||| || ||| |||| | |||| |||| ||| |||||||    
T  38436104 ctgatcttaacttaaaagaacttctaaaagtgaagtcttcgctgaaagagcttcatggtgacatcgatgcatcatcttctttgcttcttctttcaaagaa 38436203  T
Q  132 acctata 138  Q
     ||||||    
T  38436204 gcctata 38436210  T

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