View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_high_6 (Length: 563)
Name: NF17761_high_6
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 36 - 546
Target Start/End: Complemental strand, 33117134 - 33116624
Alignment:
| Q |
36 |
aaactaacataaactaactcaaccattctgagaggcgattctcttattccaaaacttgaattgcagagtcctttgttcaagcatcttctccacttcctca |
135 |
Q |
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|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33117134 |
aaactaactcaaactgactcaacccttctgagaggcgattctcttattccaaaacttgaattgcagagtcctttgttgaagcatcttctccacttcctca |
33117035 |
T |
|
| Q |
136 |
attggaacacctttggtttctggtacgaaaacgaggacaaagaaaattgctatgacagcaacaattccaaacaacatgaatgtccatgcaactccaatag |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33117034 |
attggaacacctttggtttctggtacgaaaacgaggacaaaggaacttgctatgacagcaacaattccaaacaacatgaatgtccatgcaactccaatag |
33116935 |
T |
|
| Q |
236 |
cttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggta |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116934 |
cttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggta |
33116835 |
T |
|
| Q |
336 |
aatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaacagtatatagagagccaatccaatcagtgcaagccaacccaatttgcta |
435 |
Q |
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| T |
33116834 |
aatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaacagtatatagagagccaatccaatcagtgcaagccaacccaatttgcta |
33116735 |
T |
|
| Q |
436 |
ggacatccttgtgtataccatgatctgtgtcctttttgacattggttctttgtcatgtcatttgagatcaagcatgcacctggtaacagctgcatatata |
535 |
Q |
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| T |
33116734 |
ggacatccttgtgtataccatgatctgtgtcctttttgacattggttctttgtcatgtcatttgagatcaagcatgcacctggtaacagctgcatatata |
33116635 |
T |
|
| Q |
536 |
atactattgat |
546 |
Q |
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||||| ||||| |
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| T |
33116634 |
atactcttgat |
33116624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 246 - 386
Target Start/End: Complemental strand, 33120136 - 33119996
Alignment:
| Q |
246 |
agataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagag |
345 |
Q |
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|||||||||||||||||||||||| ||||| |||| ||| || ||||||| || ||||||||||| | |||||||||||||||||||| || |||||| |
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| T |
33120136 |
agataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagag |
33120037 |
T |
|
| Q |
346 |
tttatgacccatggaacagtccccattccaggtgaaaagaa |
386 |
Q |
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| T |
33120036 |
ttgataacccatggaaccgttcccattcctggtgaaaagaa |
33119996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 111 - 386
Target Start/End: Original strand, 21491739 - 21492014
Alignment:
| Q |
111 |
ttcaagcatcttctccacttcctcaattggaacacctttggtttctggtacgaaaacgaggacaaagaaaattgctatgacagcaacaattccaaacaac |
210 |
Q |
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||||||||| ||||||||||||| ||||| || ||||| || ||||| || |||| || |||||||||||| || | | ||||| ||| |||| | | |
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| T |
21491739 |
ttcaagcatactctccacttcctccattggtacccctttagtctctggcacaaaaatgatgacaaagaaaatggcaacaatagcaatgattgcaaatatc |
21491838 |
T |
|
| Q |
211 |
atgaatgtccatgcaactccaatagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccac |
310 |
Q |
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||||| ||||| ||| |||||| ||| || | | ||| || ||||||||||||| |||||| || | ||| || ||||||| || |||||||||| |
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| T |
21491839 |
atgaaagtccaagcaggtccaattgctacggtcaaacttaagaatgattgagaaacaacaaggttggaaacccacactgttgttgatgctattcctccac |
21491938 |
T |
|
| Q |
311 |
agactcctctataccttaaagggtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaa |
386 |
Q |
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| | |||||||||||| || || || || |||||||| | ||||||||||| || ||||||||||| || ||||| |
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| T |
21491939 |
atattcctctatacctcaatggatagatttcagagttaacaacccatggaactgttcccattccaggcgagaagaa |
21492014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 386
Target Start/End: Original strand, 21558479 - 21558574
Alignment:
| Q |
291 |
tgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaa |
386 |
Q |
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|||||| || ||||||||||| | |||||| || ||||| || || || |||||||||| ||||||||||| || |||||||| ||||| ||||| |
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| T |
21558479 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaa |
21558574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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