View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_high_65 (Length: 250)
Name: NF17761_high_65
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_high_65 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 28242281 - 28242078
Alignment:
| Q |
31 |
ccaattcccaatttaattagcctataatggcagggatgctttgaaacaattgtaggaggtacaattttctaatccaaggtattatgttcatccttctatc |
130 |
Q |
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| T |
28242281 |
ccaattcccaatttaattatcctataatggcagggatgctttgaaacaattgtaggaggtacaattttctaatccaaggtattaagttcatccttctaac |
28242182 |
T |
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| Q |
131 |
cttttcattgttgtttcttaaagaggagtcatgcatgtgtttgacaaattgaatactcatgcacaaatataggtgtcaacttctttcacatggtcatgaa |
230 |
Q |
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| T |
28242181 |
cttttcattgttgtttcttaaagaggagtcatgcatgtgtttgacaaattgaatactcatgcacaaatataggtgtcaacttctttcacatggtcatgaa |
28242082 |
T |
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| Q |
231 |
tgtc |
234 |
Q |
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|||| |
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| T |
28242081 |
tgtc |
28242078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 34 - 234
Target Start/End: Complemental strand, 2371212 - 2371008
Alignment:
| Q |
34 |
attcccaatttaattagcctataatggcagggatgctttgaaacaattgtaggaggtacaattttctaatccaaggtattatgttcatccttct----at |
129 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | | || |
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| T |
2371212 |
attcccaatttaattagcttataatggcagggatgctttgaaacaattgtaggaggtacaattttgttatccaaggtattatgttcatcatacgtaccat |
2371113 |
T |
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| Q |
130 |
ccttttcattgttgtttcttaaagaggagtcatgcatgtgtttgacaaattgaatactcatgcacaaatataggtgtcaacttctttcacatggtcatga |
229 |
Q |
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| T |
2371112 |
cctttccatttttgtttcttaaagaggagtcatgtgtgtgtttgacaaattgaatactcatggacaaatataggtgtcaacttctttcatatggttatga |
2371013 |
T |
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| Q |
230 |
atgtc |
234 |
Q |
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||||| |
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| T |
2371012 |
atgtc |
2371008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 201
Target Start/End: Original strand, 49567489 - 49567616
Alignment:
| Q |
74 |
aaacaattgtaggaggtacaattttctaatccaaggtattatgttcatccttctatccttttcattgttgtttcttaaagaggagtcatgcatgtgtttg |
173 |
Q |
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||||||| | |||||||||| |||||| ||||||||| ||||||||||| |||||||||||||| | ||||| |||||||||||||| |||| || |
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| T |
49567489 |
aaacaatcgcaggaggtacagttttctgatccaaggttttatgttcatcgaactatccttttcattatagtttc--aaagaggagtcatgtgtgtgcctg |
49567586 |
T |
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| Q |
174 |
aca--aattgaatactcatgcacaaatata |
201 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
49567587 |
acacttattgaatactcatgcacaaatata |
49567616 |
T |
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