View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_high_76 (Length: 206)
Name: NF17761_high_76
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_high_76 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 7644493 - 7644318
Alignment:
| Q |
13 |
aagaatattatttaaaaaggacgttgataaactagaataagaataaaatcagaagtagattcatgttcgataccataatctgcaaaatgtcacttgcata |
112 |
Q |
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| T |
7644493 |
aagaatattatttaaaaaggacgttgataaactagaataagaataaaatcagaagtagattcatgttcgataccataatctgcaaaatgtcacttgccta |
7644394 |
T |
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| Q |
113 |
ttgtcaattagcaagaaatgataattaagaagcaaaataattgttatttacgcatcatcatgcgaggggcatagat |
188 |
Q |
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| T |
7644393 |
ttgtcaattagcaagaaatgataattaagaagcaaaataattgttatttaagcatcatcatgcaaggggcatagat |
7644318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 7637228 - 7637084
Alignment:
| Q |
13 |
aagaatattatttaaaaaggacgttgataaactagaataagaataaaatcagaagtagattcatgttcgataccataatctgcaaaatgtcacttgcata |
112 |
Q |
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||||||||||||| |||||| ||||| |||||||||||||||||||||| ||||||||||||| ||| |||||| || || ||||||| ||| | |
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| T |
7637228 |
aagaatattattttaaaaggttattgatgaactagaataagaataaaatcattagtagattcatgtataatatcataatttgaaacatgtcacctgcctt |
7637129 |
T |
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| Q |
113 |
ttgtcaattagcaagaaatgataattaagaagcaaaataattgttattt |
161 |
Q |
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| T |
7637128 |
ttgtcaattagtaagaaacga----taagaagcaaaataattgttattt |
7637084 |
T |
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