View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17761_low_1 (Length: 1132)
Name: NF17761_low_1
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 677 - 1114
Target Start/End: Complemental strand, 45387599 - 45387162
Alignment:
| Q |
677 |
tacatactgcttatagaaaacaataaactacttaggtggctgatatccttgcctcatatatgctttccgcagttagtgaacctccataatggcggatctc |
776 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45387599 |
tacatacttcttatagaaaacaataaactacttaggtagctgatatccttgcctcatatatgctttccgcagttagtgaacctccataatggcggatctc |
45387500 |
T |
|
| Q |
777 |
aaggagcggctactcccaccaaaacctgcatcggcttttaacgtaagagagggtatcaatcgaccaacggcctctggaaggcaagcttttcaaggagtgg |
876 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45387499 |
aaggagcggctactcccaccaaaacctgcatcggcttttaacgtaagagagggtatcaatcgaccaacggcctctggaaggcaagcttttcaaggagtgg |
45387400 |
T |
|
| Q |
877 |
atgttgtggaggtcaagaagcgaggccaaggtcttaaatcgtggatccgtgttgacacatctggaaactctcaggtcattgaggtagacaaatttactat |
976 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45387399 |
atgttgtggaggtcaagaagcgaggccaaggtcttaaatcgtggatccgtgttgacacatctggaaactctcaggtcattgaggtagacaaatttactat |
45387300 |
T |
|
| Q |
977 |
gatgcggcgttgcgatcttcctgcccgtgatcttcgcctacttgatcctgtgtttgtctacccatcaacaatccttggtagggagaaggctattgttgta |
1076 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45387299 |
gatgcggcgttgcgatcttcctgcccgtgatcttcgcctacttgatcctgtgtttgtctacccatcaacaatccttggtagggagaaggctattgttgta |
45387200 |
T |
|
| Q |
1077 |
aatctggagcagatacggtgtattattacagcagatga |
1114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45387199 |
aatctggagcagatacggtgtattattacagcagatga |
45387162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 421 - 614
Target Start/End: Complemental strand, 45387921 - 45387728
Alignment:
| Q |
421 |
ataatcatagagtctagtcttagtaattattattagatccttacaaacacaataataactcatcataccattttaacatgcatatcaataatgttgttaa |
520 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
45387921 |
ataatcatagattctagtcttagtaattattattagatccttacaaacacaataataactcatcataccattttaacatgcatatcaataatggtgttta |
45387822 |
T |
|
| Q |
521 |
gaagttaaaaccttttgcagttaggctgtggtcaaagcaagcctttgagaggacaccatcctcgtcctcccacgctttttgcttagtcaaacaa |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45387821 |
gaagttaaaaccttttgcagttaggctgtggtcaaatcaagcctttgagaggacaccatcctcgtcctcccacgctttttgcttagtcaaacaa |
45387728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 213 - 376
Target Start/End: Complemental strand, 45388157 - 45387994
Alignment:
| Q |
213 |
acaggaggattctgattctattcatctgattttctgttcgacgacatccttgattttctcttctctactaaactgtatgcaccttcttgttttcttcact |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45388157 |
acaggaggattctgattctattcatctgattttctgttcgacgacatcctgtattttctcttctctactcaactgtatgcaccttcttgttttcttcact |
45388058 |
T |
|
| Q |
313 |
caatcaatattgggtctgccggcatgttatcataaatgcttttattccggtttcggattcaata |
376 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45388057 |
caatcaatattgggtctgccggcatcttatcataaatgcttttattccggtttcggattcaata |
45387994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 45388329 - 45388181
Alignment:
| Q |
24 |
aaacaaagaaacgaaggaagttattgttttcatataattccgccgaacatcatcggactactcttctatttctatct--------atctcagttcactct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45388329 |
aaacaaagaaacgaaggaagttattgttttcatataattccgccgaacatcatcggactactcttctatttctatctatctatctatctcagttcactct |
45388230 |
T |
|
| Q |
116 |
ccttcttcgtcatcctcctcctccttcaggtatattattattattatta |
164 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45388229 |
ccttcgtcgtcatcctactcctccttcaggtatattattattattatta |
45388181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 611 - 649
Target Start/End: Complemental strand, 45387634 - 45387596
Alignment:
| Q |
611 |
acaactatgtttgagattgttacggcgtgccttgataca |
649 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
45387634 |
acaactatgtttcagattgttacggcgtggcttgataca |
45387596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 665 - 741
Target Start/End: Complemental strand, 15433595 - 15433519
Alignment:
| Q |
665 |
gttgtttatgtttacatactgcttatagaaaacaataaactacttaggtggctgatatccttgcctcatatatgctt |
741 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||| |||||||||||||||| |
|
|
| T |
15433595 |
gttgtttatgtttacatactgcttatagaaatcaattaactactaaggttgctgatatccctgcctcatatatgctt |
15433519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University