View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_12 (Length: 506)
Name: NF17761_low_12
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Complemental strand, 14394314 - 14393824
Alignment:
| Q |
18 |
cgtataatgcgacgaattcttccgtcgcatgcaaaaatctctgacgacgcaaaagaaaccattcaagaatgtgtatctgaatacataagcttcataacat |
117 |
Q |
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| T |
14394314 |
cgtataatgcgacgaattcttccgtcgcatgcaaaaatctccgacgacgcaaaagaaaccattcaagaatgtgtatccgaatacataagcttcataacat |
14394215 |
T |
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| Q |
118 |
ccgaagcaaacgatcgatgccaaagagaacaaagaaaaacagttacagcagaagatatactatgggcaatggggaaacttggttttgatgattatgttca |
217 |
Q |
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| T |
14394214 |
ccgaagcaaacgatcgatgccaaagagaacaaagaaaaacagttacagcagaagatatactatgggcaatggggaaacttggttttgatgattatgttca |
14394115 |
T |
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| Q |
218 |
tcctttaacattttaccttcaacgtttccgtgaaagtgaaggtgaacctgcttctgttcgacgctcttcttctcttgctttgcctccttcttttccatta |
317 |
Q |
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| T |
14394114 |
tcctttaacattttaccttcaacgttaccgtgaaagtgaaggtgaacctgcttctgttcgacgcacttcttctcttgctttgcctccttcttttccatta |
14394015 |
T |
|
| Q |
318 |
ttgcagcagcattcctcatcgttttcatcaatgccacttcctctaat---taatgataatcataatagcaatggttatggtcatggttatggttttgatt |
414 |
Q |
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| T |
14394014 |
atgcagcagcattcttcatcgttttcatcaatgccacttcctctaattaataataataatcataatagcaatggttatggtcatggttatggttttgatt |
14393915 |
T |
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| Q |
415 |
ttgatcaagggttttatagagatggtggtgatgatgctgctccttcttctgctagttttgttcctaactttgattgtaattttcttcatct |
505 |
Q |
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| T |
14393914 |
ttgatcaagggttttatagagatggtggtgatgatgctgctccttcttctgctagttttgtaccaaactttgattgtaattttcttcatct |
14393824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 211
Target Start/End: Original strand, 56098828 - 56098994
Alignment:
| Q |
45 |
catgcaaaaatctctgacgacgcaaaagaaaccattcaagaatgtgtatctgaatacataagcttcataacatccgaagcaaacgatcgatgccaaagag |
144 |
Q |
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| T |
56098828 |
catgcaaaaatatctgatgatgcaaaagaaacaatccaagagtgtgtgtctgagtacatcagcttcataactggagaagccaatgaacgttgtcagagag |
56098927 |
T |
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| Q |
145 |
aacaaagaaaaacagttacagcagaagatatactatgggcaatggggaaacttggttttgatgatta |
211 |
Q |
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| T |
56098928 |
agcaaaggaagacaataactgcagaagatgtgctttgggctatgagtaagcttggttttgatgatta |
56098994 |
T |
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