View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17761_low_13 (Length: 494)

Name: NF17761_low_13
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17761_low_13
NF17761_low_13
[»] chr5 (15 HSPs)
chr5 (17-357)||(33905664-33906005)
chr5 (370-477)||(33904891-33904998)
chr5 (23-190)||(316956-317126)
chr5 (19-147)||(10700500-10700628)
chr5 (397-477)||(33736479-33736559)
chr5 (411-477)||(33867347-33867413)
chr5 (18-149)||(8038387-8038517)
chr5 (19-184)||(10054629-10054794)
chr5 (19-190)||(8445884-8446051)
chr5 (397-466)||(33698972-33699041)
chr5 (397-462)||(33680442-33680507)
chr5 (425-466)||(33763760-33763801)
chr5 (418-465)||(33823197-33823244)
chr5 (27-96)||(4160796-4160864)
chr5 (76-165)||(16640778-16640861)
[»] chr3 (11 HSPs)
chr3 (19-200)||(5270561-5270743)
chr3 (19-189)||(20937846-20938016)
chr3 (19-201)||(1683662-1683845)
chr3 (108-168)||(5433774-5433834)
chr3 (19-99)||(49199364-49199444)
chr3 (19-99)||(43401696-43401776)
chr3 (19-99)||(43403639-43403719)
chr3 (18-104)||(50432538-50432622)
chr3 (29-123)||(35138577-35138671)
chr3 (22-99)||(36019040-36019117)
chr3 (132-185)||(41819334-41819387)
[»] chr8 (9 HSPs)
chr8 (19-151)||(11137215-11137347)
chr8 (19-187)||(3772380-3772552)
chr8 (19-180)||(40328964-40329129)
chr8 (397-466)||(21306368-21306437)
chr8 (19-99)||(11384173-11384253)
chr8 (19-81)||(2999720-2999782)
chr8 (22-99)||(9633513-9633590)
chr8 (144-201)||(15691105-15691162)
chr8 (63-99)||(30909595-30909631)
[»] scaffold0001 (2 HSPs)
scaffold0001 (386-466)||(149304-149384)
scaffold0001 (313-359)||(149439-149485)
[»] chr4 (15 HSPs)
chr4 (22-190)||(33990037-33990204)
chr4 (35-190)||(41961603-41961760)
chr4 (19-187)||(26699254-26699421)
chr4 (19-179)||(55085262-55085421)
chr4 (19-168)||(12119733-12119889)
chr4 (19-99)||(3786151-3786231)
chr4 (19-78)||(33090069-33090128)
chr4 (19-96)||(32091630-32091706)
chr4 (19-99)||(2209907-2209987)
chr4 (19-99)||(12073581-12073661)
chr4 (132-187)||(41964719-41964774)
chr4 (62-104)||(8676870-8676912)
chr4 (117-201)||(33090155-33090239)
chr4 (134-190)||(38811013-38811069)
chr4 (119-179)||(54881592-54881652)
[»] chr1 (16 HSPs)
chr1 (19-201)||(12318320-12318502)
chr1 (20-200)||(9109214-9109397)
chr1 (19-187)||(28242493-28242666)
chr1 (19-187)||(37168486-37168656)
chr1 (19-190)||(41136008-41136174)
chr1 (19-96)||(25652274-25652351)
chr1 (127-187)||(7482033-7482093)
chr1 (109-173)||(31929380-31929444)
chr1 (19-99)||(37032968-37033048)
chr1 (21-151)||(25700978-25701108)
chr1 (19-81)||(7482148-7482210)
chr1 (135-201)||(22079608-22079674)
chr1 (19-81)||(34603751-34603813)
chr1 (135-185)||(47115481-47115531)
chr1 (21-102)||(2926701-2926782)
chr1 (61-152)||(30670318-30670410)
[»] scaffold0002 (1 HSPs)
scaffold0002 (19-200)||(490125-490297)
[»] chr2 (7 HSPs)
chr2 (19-200)||(42261290-42261462)
chr2 (26-187)||(7451314-7451479)
chr2 (19-185)||(30217860-30218024)
chr2 (19-180)||(17450765-17450927)
chr2 (21-99)||(16676420-16676498)
chr2 (118-187)||(33648459-33648528)
chr2 (19-99)||(24398251-24398330)
[»] chr7 (10 HSPs)
chr7 (19-187)||(22328202-22328369)
chr7 (19-187)||(8359126-8359295)
chr7 (19-187)||(2390474-2390646)
chr7 (19-187)||(29608925-29609091)
chr7 (408-465)||(5468519-5468576)
chr7 (19-165)||(3259183-3259333)
chr7 (19-77)||(1360094-1360152)
chr7 (18-99)||(8452099-8452179)
chr7 (21-145)||(43363321-43363446)
chr7 (132-173)||(48599158-48599199)
[»] scaffold0197 (1 HSPs)
scaffold0197 (24-99)||(1295-1370)
[»] scaffold0236 (1 HSPs)
scaffold0236 (21-185)||(10679-10848)
[»] chr6 (6 HSPs)
chr6 (56-117)||(11660829-11660890)
chr6 (108-201)||(25073840-25073933)
chr6 (29-149)||(5739843-5739963)
chr6 (19-185)||(26800776-26800946)
chr6 (19-99)||(3808603-3808683)
chr6 (28-124)||(17758222-17758317)
[»] scaffold0927 (1 HSPs)
scaffold0927 (123-187)||(3399-3463)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 33906005 - 33905664
Alignment:
Q  17 aattctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgc 116  Q
    |||||| ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||    
T  33906005 aattctatactctctttatcttgtttattcattggttcgaatgtggttttactttacacttgattgctagattaaatcttgatctattggcgttgcgtgc 33905906  T
Q  117 ggttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagttgtcgaattcacccatacacattaatg 216  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33905905 ggttattttagttattggttgtcattgatacttgtttcacaaatctaaatttaattggtgtgagatttggagttgtcgaattcacccatacacattaatg 33905806  T
Q  217 acactacttacttttcttaatatatttcctcaannnnnnnctttaagaatcttataagtagaaacatatggattattgtattcttcgtgtatcatt-cct 315  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||    
T  33905805 acactacttacttttcttaatatatttcctcaatttttttctttaagaatcttataaatagaaacatatggagtattgtattcttcgtgtatcattccct 33905706  T
Q  316 ttgtctttttacgcaacattaacacatgtatgcataaatata 357  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33905705 ttgtctttttacgcaacattaacacatgtatgcataaatata 33905664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 370 - 477
Target Start/End: Complemental strand, 33904998 - 33904891
Alignment:
Q  370 tgtctatgtacaataaaggaaatttaaatatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtat 469  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33904998 tgtctatggacaataaaggaaagttaaatatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagacaagctactcaaggcttgtat 33904899  T
Q  470 acagaagt 477  Q
    ||||||||    
T  33904898 acagaagt 33904891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 316956 - 317126
Alignment:
Q  23 ctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctat---tggcgttgcttgcggt 119  Q
    ||||||||||||| || ||||||| ||||||| | || |||||||||||||||||| ||||||||| | |||||||||| |   ||  |||||||| |||    
T  316956 ctactctctttattttgtttattctttggttcaattgtggttttgctttacacttggttgctagataagatctagatctgtcgttgttgttgcttgtggt 317055  T
Q  120 tattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagtt 190  Q
    |||||| |||| ||||||||| ||||||||||  ||||||||||||||| |||| ||||||||||||||||    
T  317056 tattttggttattggttgtcactgatacttgtcccacgaatctaaatttcattgatgtgagatttggagtt 317126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 10700628 - 10700500
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||| |||||||||||  |||||| ||| || || || ||||||| |||||||||||||| |||||||||| |||||| ||||   |||||||| |    
T  10700628 ttctctacgctctttatcttgcttattctttgatttgattgtggttttgatttacacttgattgttagattaaatatagatccattgttattgcttgcag 10700529  T
Q  119 ttattttagttactggttgtcattgatac 147  Q
    ||||||| |||| ||||||||||||||||    
T  10700528 ttattttggttattggttgtcattgatac 10700500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 397 - 477
Target Start/End: Complemental strand, 33736559 - 33736479
Alignment:
Q  397 atatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagt 477  Q
    ||||||||| ||| ||| |  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33736559 atatggagaagactagaagtttgagaaaaggtgcatggacatatgaggaagacaagctactcaaggcttgtatacagaagt 33736479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 33867413 - 33867347
Alignment:
Q  411 agaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagt 477  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  33867413 agaggtgtgagaaaaggtgcatggacatatgaggaagacaagctactcaaggcttgtatgcagaagt 33867347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 8038387 - 8038517
Alignment:
Q  18 attctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcg 117  Q
    |||||||||||||||||||||||| |||  ||||||||| || |||||| ||||||||||| ||||||||||| ||| ||||||||||  |||| ||| |    
T  8038387 attctctactctctttatcttatt-attttttggttcgattgtggtttttctttacacttggttgctagattagatcaagatctattgttgttgattgtg 8038485  T
Q  118 gttattttagttactggttgtcattgatactt 149  Q
     || |||| ||||||| |||||| | ||||||    
T  8038486 attgttttggttactgattgtcactaatactt 8038517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 10054794 - 10054629
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||| |||||| |||||||| ||||||  ||| ||||| ||   |||||||||||||||| ||||||||||| |||||||| | |||  ||||| || ||    
T  10054794 ttctgtactctttttatcttgtttattttttgcttcgattgtaattttgctttacacttggttgctagattagatctagatttgttgatgttgcatgtgg 10054695  T
Q  119 ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagattt 184  Q
    |||||||  ||| | ||||||||||||||||||   || ||||||||||| |||| | ||||||||    
T  10054694 ttattttgattattagttgtcattgatacttgtcctacaaatctaaatttcattgatatgagattt 10054629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 8445884 - 8446051
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||| |||| |||||||||||| | || |||||| |||||||||| |||||||||| ||    ||||| |||||||||| |||  |||||||| ||    
T  8445884 ttctctaccctctctatcttatttatcctttagttcgattgcggttttgttttacacttggtt----gattagatctagatctgttgttgttgcttgtgg 8445979  T
Q  119 ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagtt 190  Q
    |||| ||  |||   |||| |||||||||||||  ||| ||||||||||| |||| |||| |||||| ||||    
T  8445980 ttatcttgattatcagttgccattgatacttgtcccacaaatctaaatttcattgatgtgggatttgtagtt 8446051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 397 - 466
Target Start/End: Complemental strand, 33699041 - 33698972
Alignment:
Q  397 atatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttg 466  Q
    ||||||||| | | |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33699041 atatggagaaggctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttg 33698972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 33680507 - 33680442
Alignment:
Q  397 atatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaagg 462  Q
    ||||||| | |||||||||  |||||||||||||||||||||||||||| || || ||||||||||    
T  33680507 atatggaaaagaccagaggtttgagaaaaggtgcatggacatatgaggaggacaatctactcaagg 33680442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 466
Target Start/End: Complemental strand, 33763801 - 33763760
Alignment:
Q  425 aggtgcatggacatatgaggaagataagctactcaaggcttg 466  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  33763801 aggtgcctggacatatgaggaagataagctactcaaggcttg 33763760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 465
Target Start/End: Complemental strand, 33823244 - 33823197
Alignment:
Q  418 tgagaaaaggtgcatggacatatgaggaagataagctactcaaggctt 465  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  33823244 tgagaaaaggtgcatggacatatgaggaagacaacttactcaaggctt 33823197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 4160796 - 4160864
Alignment:
Q  27 tctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatcta 96  Q
    |||| ||||||| ||||||| ||||||||| |  |||||||||||||||||| ||| ||||||| |||||    
T  4160796 tctcattatcttgtttattctttggttcgattatggttttgctttacacttggttg-tagattagatcta 4160864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 16640861 - 16640778
Alignment:
Q  76 ttgattgctagattaaatctagatctattggcgttgcttgcggttattttagttactggttgtcattgatacttgtttcacgaatctaaa 165  Q
    |||||| ||||||||||||||||| | |||  |||||||| |||||||||     |||||||| ||||||||||| | ||||||||||||    
T  16640861 ttgatttctagattaaatctagattt-ttgttgttgcttgtggttatttt-----ctggttgttattgatacttgctccacgaatctaaa 16640778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 5270561 - 5270743
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||||||||||||| | ||||||| ||||||||| || |||||||| ||||||||| ||||||||||| ||||||||||||||  |||||||| ||    
T  5270561 ttctctactctctttatcatgtttattctttggttcgattgtggttttgcattacacttggttgctagattagatctagatctattgttgttgcttgtgg 5270660  T
Q  119 -ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagttgtcgaattca 200  Q
     || |||| |||| ||||||||||||||| ||    || |||| ||||||| |||| |||||||||| |||||  ||||||||    
T  5270661 tttttttttgttattggttgtcattgatattttcaccatgaatataaatttcattgatgtgagattttgagttaccgaattca 5270743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 20937846 - 20938016
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||||||||||||||| ||||||  ||||||||| || | |||| ||||||||||||||  ||||||| |||||||| | |||  | ||||||  |    
T  20937846 ttctctactctctttatcttgtttattatttggttcgattgtgattttactttacacttgattaatagattagatctagatttgttgttgctgcttgtag 20937945  T
Q  119 ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagt 189  Q
    |||||||  ||| | ||||||||||||||||||  ||| ||||||||||| | || |||||||||||||||    
T  20937946 ttattttgcttattagttgtcattgatacttgtcccacaaatctaaattttactgatgtgagatttggagt 20938016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 1683662 - 1683845
Alignment:
Q  19 ttctctactctctttatcttatttattcatt-ggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcg 117  Q
    |||||||||||||||||||| ||||||  || ||||||| || ||||||  |||||||| | || |||||||| ||||||||||| |   |||| |||      
T  1683662 ttctctactctctttatcttgtttatttttttggttcgattgtggttttattttacactaggtttctagattagatctagatctactattgttggttgta 1683761  T
Q  118 gttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagttgtcgaattcac 201  Q
    ||||| || |||| ||||||||||||||  ||||  |||  |||||||||| |||| |||||||||| |||||  |||||||||    
T  1683762 gttatgttggttattggttgtcattgatgtttgtcccacacatctaaatttcattgatgtgagatttagagttaccgaattcac 1683845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 5433834 - 5433774
Alignment:
Q  108 gttgcttgcggttattttagttactggttgtcattgatacttgtttcacgaatctaaattt 168  Q
    |||||||| ||||||||| |||| ||||||||||||||||||| | |||||||||||||||    
T  5433834 gttgcttgtggttattttggttattggttgtcattgatacttgctccacgaatctaaattt 5433774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 49199444 - 49199364
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    |||||||||||||||||||| ||||| | |||||| || || ||||||||| | |||||| || |||||||| ||||||||    
T  49199444 ttctctactctctttatcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctagat 49199364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 43401776 - 43401696
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    |||||||||||||||||||| ||||| | |||||| || || | ||||||| | |||||| || |||||||| ||||||||    
T  43401776 ttctctactctctttatcttgtttatcctttggttagattgtgattttgctatgcacttgttttctagattagatctagat 43401696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 43403719 - 43403639
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    ||||| |||||||||||||| ||||| | |||||| || || ||||||||| | |||||| || |||||||| ||||||||    
T  43403719 ttctccactctctttatcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctagat 43403639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 50432622 - 50432538
Alignment:
Q  18 attctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctatt 104  Q
    ||||||||||||||||||||| ||   || |||||| || || ||||||||||| |||||  ||||||||||  |||||||||||||    
T  50432622 attctctactctctttatcttgttg--tctttggtttgattgtggttttgctttccacttcgttgctagattggatctagatctatt 50432538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 35138671 - 35138577
Alignment:
Q  29 tctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcggttatt 123  Q
    |||||||||  ||||||| ||||||||| || ||||||| ||||||| | |||||||||||  ||||| || | |||  |||||||| |||||||    
T  35138671 tctttatctggtttattctttggttcgattgtggttttgttttacacctaattgctagattggatctaaatatgttgttgttgcttgtggttatt 35138577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 36019040 - 36019117
Alignment:
Q  22 tctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    ||||||||||||||||| ||||| | |||||| || || ||||||| |  ||||||| || |||||||| ||||||||    
T  36019040 tctactctctttatcttgtttatcctttggttagattgtggttttgttaaacacttgttttctagattagatctagat 36019117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 41819387 - 41819334
Alignment:
Q  132 tggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttg 185  Q
    |||||| |||||||||||| | ||||||||||||||| |||| |||||| ||||    
T  41819387 tggttgccattgatacttgctccacgaatctaaatttcattgatgtgaggtttg 41819334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 11137215 - 11137347
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||||||||||||||| ||||||||||||||||| || |||||| ||||| ||||||||||||||||| || ||||| | ||   |||||||| ||    
T  11137215 ttctctactctctttatcttgtttattcattggttcgattgtggtttttctttatacttgattgctagattagatttagatatgttattgttgcttgtgg 11137314  T
Q  119 ttattttagttactggttgtcattgatacttgt 151  Q
    |||||||  |||  |||||||||||||||||||    
T  11137315 ttattttgattatcggttgtcattgatacttgt 11137347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 3772380 - 3772552
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||||||||||||||| ||||||| |||||| || || ||||||||| | ||||||||| ||||||||||||||||| | |||  |||||||| ||    
T  3772380 ttctctactctctttatcttgtttattctttggttagattgtggttttgctatgcacttgatttctagattaaatctagat-tgttgttgttgcttgtgg 3772478  T
Q  119 tta-----ttttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
    |||     |||| || | |||||| ||||||||| || | ||||||||||||||| |||| |||||| ||||||    
T  3772479 ttattttcttttggtgattggttgccattgatacctgctccacgaatctaaatttcattgatgtgaggtttgga 3772552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 40328964 - 40329129
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||||||| || |||| ||||| | |||||| || || ||||||||| | |||||| || |||||||| ||||||| || |||   ||||||| ||    
T  40328964 ttctctactctccttttcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctaga-ctgttgttattgcttgtgg 40329062  T
Q  119 ttattt-----tagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgag 180  Q
    ||||||     | |||  ||||||||||||||||||| |  |||||||||||||| |||| ||||||    
T  40329063 ttatttacatttggttgttggttgtcattgatacttgctctacgaatctaaatttcattgatgtgag 40329129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 466
Target Start/End: Complemental strand, 21306437 - 21306368
Alignment:
Q  397 atatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttg 466  Q
    |||||||||  ||| |||| ||||||||||| |||||||| ||  |||||||| ||||||||||||||||    
T  21306437 atatggagaataccggaggtgtgagaaaaggcgcatggacttacaaggaagatgagctactcaaggcttg 21306368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 11384173 - 11384253
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    |||| ||||||||||||||| ||||| | |||||| || || ||||||||| | |||||| || |||||||| ||||||||    
T  11384173 ttctttactctctttatcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctagat 11384253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 2999782 - 2999720
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgatt 81  Q
    |||||||||||||||||||| ||||||| |||||| || || | ||||||| | |||||||||    
T  2999782 ttctctactctctttatcttgtttattctttggttagattgtgattttgctatgcacttgatt 2999720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 9633590 - 9633513
Alignment:
Q  22 tctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    ||||||||||||||||| ||||||| ||||||| | || | ||||  |||||| ||||||| || |||| ||||||||    
T  9633590 tctactctctttatcttgtttattctttggttcaattgtgattttattttacaattgattgttatattagatctagat 9633513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 15691105 - 15691162
Alignment:
Q  144 atacttgtttcacgaatctaaatttaattggtgtgagatttggagttgtcgaattcac 201  Q
    ||||||| | ||||||||||||||| |||| |||||| |||||||||  |||||||||    
T  15691105 atacttgctccacgaatctaaatttcattgatgtgaggtttggagttaccgaattcac 15691162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 30909595 - 30909631
Alignment:
Q  63 ttttgctttacacttgattgctagattaaatctagat 99  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  30909595 ttttgctttacacttaattgctagattagatctagat 30909631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 149384 - 149304
Alignment:
Q  386 aggaaatttaaatatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttg 466  Q
    |||||| ||||||||||| ||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  149384 aggaaacttaaatatggatatgcccagaggcgtgagaaaaggtgcctggacatacgaggaagataagctactcaaggcttg 149304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 149485 - 149439
Alignment:
Q  313 cctttgtctttttacgcaacattaacacatgtatgcataaatatata 359  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||    
T  149485 cctttctctttttacgcaaccttaacacatgtatgtataaatatata 149439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 33990037 - 33990204
Alignment:
Q  22 tctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcggtta 121  Q
    ||||||||||||||||| ||||||| ||||||| | |  || |||||| | |||||| || |||||||| |||||||| | |||  |||||||| | |||    
T  33990037 tctactctctttatcttgtttattctttggttcaattctggatttgctatgcacttggtttctagattagatctagat-tgttgttgttgcttgtgttta 33990135  T
Q  122 ttttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagtt 190  Q
    |||| |||| || ||| |||||||||||||  ||| |||||| |||| |||||||||||||||||||||    
T  33990136 ttttggttattgattgccattgatacttgtcccacaaatctagatttcattggtgtgagatttggagtt 33990204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 41961603 - 41961760
Alignment:
Q  35 tcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcggttattttagttactgg 134  Q
    |||| ||||||| |||||| || || |||||||||||| || || || |||||||| ||||||||||||||  ||||||||  ||| |||| |||| |||    
T  41961603 tcttgtttattctttggtttgattgtggttttgctttaaacctggttactagattagatctagatctattgttgttgcttgtagtttttttggttattgg 41961702  T
Q  135 ttgtcattgatacttgtttcacgaatctaaatttaattg--gtgtgagatttggagtt 190  Q
    ||||||||||||||||   |||  |||||||||| ||||  ||||||| |||||||||    
T  41961703 ttgtcattgatacttgccccacagatctaaatttcattgatgtgtgagttttggagtt 41961760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 26699421 - 26699254
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||| ||||||||||||||| ||||||| ||||||| | |  ||||||||| | ||||||  | |||||||| |||||||| | ||| |||  |||| ||    
T  26699421 ttctttactctctttatcttgtttattctttggttcaattatggttttgctatgcacttggattctagattagatctagat-tgttgtcgtgtcttgtgg 26699323  T
Q  119 ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
    ||| ||| |||| |||||| ||||||||| |||  ||||||||||||||| |||| |||||| ||||||    
T  26699322 ttaatttggttattggttgccattgatacctgtcccacgaatctaaatttcattgatgtgaggtttgga 26699254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 55085421 - 55085262
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||| ||||||||||||||| ||||||| |||||| || || ||||||||| | |||||| || ||| |||| |||||||| | |||   |||||||  |    
T  55085421 ttctttactctctttatcttgtttattccttggttggattgtggttttgctatgcacttggtttctaaattagatctagat-tgttgttattgcttgtag 55085323  T
Q  119 ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtga 179  Q
    ||| |||  ||  ||||||||||||||||||| | || |||||||||||| |||| |||||    
T  55085322 ttaatttgattgttggttgtcattgatacttgctccatgaatctaaatttcattgatgtga 55085262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 12119733 - 12119889
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat------ctattggcgttgc 112  Q
    |||||||||||||||||||| |||| || ||||| ||| || ||||||||| | |||||  || |||||||| ||||||||       | |||  |||||    
T  12119733 ttctctactctctttatcttgtttagtctttggtccgattgtggttttgctatgcacttagtttctagattagatctagattgattgttgttgttgttgc 12119832  T
Q  113 ttgcggtta-ttttagttactggttgtcattgatacttgtttcacgaatctaaattt 168  Q
    ||| ||||| |||| ||||| |||||||||||||||||| | || ||||||||||||    
T  12119833 ttgtggttattttttgttaccggttgtcattgatacttgctccatgaatctaaattt 12119889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 3786151 - 3786231
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    |||||||||||||||||||| || |||| ||||||||| ||   ||||| |||||||||| |||||| |||| ||||||||    
T  3786151 ttctctactctctttatcttgttcattctttggttcgattgtaattttgttttacacttggttgctatattagatctagat 3786231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 33090069 - 33090128
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttg 78  Q
    |||||| ||||||||||||| ||||||  ||||||||| || ||||||||||||||||||    
T  33090069 ttctctgctctctttatcttgtttattttttggttcgattgtggttttgctttacacttg 33090128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 32091630 - 32091706
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatcta 96  Q
    |||||||| ||||||||||| ||||||| || |||| | || |||||| ||||||||||| ||||||||||| |||||    
T  32091630 ttctctacgctctttatcttgtttattctttagttcaattgtggtttt-ctttacacttgtttgctagattagatcta 32091706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 2209907 - 2209987
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    |||||||||||||||||||| |||||   |||||| || || ||||||||| | |||||| || |||||||| ||||||||    
T  2209907 ttctctactctctttatcttgtttatcatttggttagattgtggttttgctatgcacttgttttctagattagatctagat 2209987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 12073581 - 12073661
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    |||| ||||||||||||||| ||||||| |||||| || || ||||||| | | |||||| || |||||||| ||||||||    
T  12073581 ttctttactctctttatcttgtttattctttggttagattgtggttttgttatgcacttggtttctagattagatctagat 12073661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 41964719 - 41964774
Alignment:
Q  132 tggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
    |||||| |||||||||||| | ||||||||||||||| |||| |||||| ||||||    
T  41964719 tggttgccattgatacttgctccacgaatctaaatttcattgatgtgaggtttgga 41964774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 8676912 - 8676870
Alignment:
Q  62 gttttgctttacacttgattgctagattaaatctagatctatt 104  Q
    ||||| |||||||||||||||||||||||| |||| |||||||    
T  8676912 gttttactttacacttgattgctagattaactctatatctatt 8676870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 33090155 - 33090239
Alignment:
Q  117 ggttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagttgtcgaattcac 201  Q
    ||||||||  |||| || |||||||||||||||    ||| |||| |||||| |||| ||||||||||||||||  |||||||||    
T  33090155 ggttatttcggttattgattgtcattgatacttcccccacaaatcaaaatttcattgatgtgagatttggagttaccgaattcac 33090239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 38811069 - 38811013
Alignment:
Q  134 gttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagtt 190  Q
    |||||||||||||||||   | ||||||||||||| |||||| ||||||||| ||||    
T  38811069 gttgtcattgatacttgccccgcgaatctaaatttcattggtttgagatttgaagtt 38811013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 54881592 - 54881652
Alignment:
Q  119 ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtga 179  Q
    ||||||| |||  ||||||||||||||||||| | ||||||| ||||||| |||| |||||    
T  54881592 ttattttggttgttggttgtcattgatacttgctccacgaatataaatttcattgatgtga 54881652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 12318502 - 12318320
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||| ||||| ||||||||| ||||||| ||||||| | |  | |||||||||||| ||| ||||||| |||||||||||||| |||  ||||| || |     
T  12318502 ttctttactccctttatcttgtttattctttggttcaattatgattttgctttacaattggttgctaggttaaatctagatctgttgttgttgcgtgtgc 12318403  T
Q  119 ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagttgtcgaattcac 201  Q
    ||||||| |||| |||||| ||||||||||||   || | ||| |||||| |||| |||||||||||||| |  |||||||||    
T  12318402 ttattttggttattggttgccattgatacttgccccatgcatccaaatttcattgatgtgagatttggagctaccgaattcac 12318320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 9109397 - 9109214
Alignment:
Q  20 tctctactctctttatctta-tttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||||||||||||||  ||||||| |||||| || || |||| ||||| ||| ||| ||||||| ||| |||||||||| |||   || |||| ||    
T  9109397 tctctactctctttatctttgtttattctttggtttgattgtggttatgcttcacagttggttgctagcttagatctagatctgttgttattacttgtgg 9109298  T
Q  119 ttattttagttactggttgtc--attgatacttgtttcacgaatctaaatttaattggtgtgagatttggagttgtcgaattca 200  Q
    |||||||||||| ||||||||  ||||||||||| |  |  ||||||||||| |||| | | |||||||||||| | |||||||    
T  9109297 ttattttagttattggttgtcatattgatacttgctcaagaaatctaaattttattgatataagatttggagttatagaattca 9109214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 28242493 - 28242666
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggtttt-gctttacacttgattgctagattaaatctagatctattggcgttgcttgcg 117  Q
    |||||||||||||||||||| |||||   || ||| || || |||||| ||| | |||||| || ||| |||| |||||||| | |||  |||||||| |    
T  28242493 ttctctactctctttatcttgtttatcattttgttagattgtggtttttgctattcacttggtttctaaattagatctagat-tgttgttgttgcttgag 28242591  T
Q  118 gttattt-----tagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
    |||||||     | |||| ||||||||||||||||||| | ||||||||||||||| |||| |||||| ||||||    
T  28242592 gttatttacatttggttattggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaggtttgga 28242666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 37168486 - 37168656
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||| ||||||||||||||| ||||||| |||||| || || ||||||||| | |||||||||  |||| ||  |||| ||  ||||  |||||||| ||    
T  37168486 ttctttactctctttatcttgtttattccttggtttgattgtggttttgctatgcacttgatta-tagactaggtctatat--attgttgttgcttgagg 37168582  T
Q  119 ttattt-----tagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
    ||||||     | |||| ||||||||||||||||||| |  |||||||||||||| |||| || ||||||||||    
T  37168583 ttatttacatttggttattggttgtcattgatacttgctctacgaatctaaatttcattgatgcgagatttgga 37168656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 41136008 - 41136174
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||||||||||||||| || |||| ||| |||   || | ||||||||||||||||    |||||||| ||||| |  | |||  ||| |||| ||    
T  41136008 ttctctactctctttatcttgtt-attctttgattcagttgtgattttgctttacacttg----ctagattagatctatacatgttgttgttacttgtgg 41136102  T
Q  119 ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagtt 190  Q
    ||||||| |||| ||||||||| | ||||||    ||||||||||||||| |||| ||||||||||||||||    
T  41136103 ttattttggttattggttgtcaataatactttccccacgaatctaaatttcattgatgtgagatttggagtt 41136174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 25652274 - 25652351
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatcta 96  Q
    ||||||||||||||||| || ||||||  |||||| |  || |||||||||||||||||  ||||||||||| |||||    
T  25652274 ttctctactctctttattttgtttattatttggtttgcctgtggttttgctttacacttagttgctagattagatcta 25652351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 7482093 - 7482033
Alignment:
Q  127 gttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
    |||| ||||||||||||||||||| | ||||||| ||||||| |||| |||||| ||||||    
T  7482093 gttattggttgtcattgatacttgctccacgaatttaaattttattgatgtgaggtttgga 7482033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 31929444 - 31929380
Alignment:
Q  109 ttgcttgcggttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattg 173  Q
    ||||||| ||||| ||| |||  ||||||||||||||||||| | ||||||||||||||| ||||    
T  31929444 ttgcttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattg 31929380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 37033048 - 37032968
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    |||||||||||||||||||| ||||| | |||||| || || | ||||||| | |||||| || |||||||| ||||||||    
T  37033048 ttctctactctctttatcttgtttatcctttggttagagtgtgattttgctatgcacttgttttctagattagatctagat 37032968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 25701108 - 25700978
Alignment:
Q  21 ctctactctctttatcttatttattcattggttcgaatgcggttt-tgctttacacttgattgctagattaaatctagatctattggcgttgcttgcggt 119  Q
    |||||||||||||||||| || |||  ||||||||  || ||||| ||||||| ||||| ||||||||||  |||||||||||| |  |||||||| |      
T  25701108 ctctactctctttatcttgtt-attttttggttcggttgtggtttgtgctttatacttggttgctagattcgatctagatctatcgttgttgcttgtgac 25701010  T
Q  120 tattttagttactggttgtcattgatacttgt 151  Q
    |||||||| || |||||  |||||||| ||||    
T  25701009 tattttagatattggtttgcattgatatttgt 25700978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 7482210 - 7482148
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgatt 81  Q
    |||| ||||||||||||||| ||||||| |||||| || || ||||||||| | |||||||||    
T  7482210 ttctttactctctttatcttgtttattccttggttggattgtggttttgctatgcacttgatt 7482148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 22079608 - 22079674
Alignment:
Q  135 ttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagttgtcgaattcac 201  Q
    ||||||||||||| |||  ||| ||||||||||| |||| | ||||||||||||||  |||||||||    
T  22079608 ttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattcac 22079674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 34603751 - 34603813
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgatt 81  Q
    |||| ||||||||||||||| ||||||| |||||| || || ||||||||| | |||||||||    
T  34603751 ttctttactctctttatcttgtttattccttggttggattgtggttttgctatgcacttgatt 34603813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 47115481 - 47115531
Alignment:
Q  135 ttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttg 185  Q
    |||||||||||||||| | ||||||||||||||| |||| |||||| ||||    
T  47115481 ttgtcattgatacttgctccacgaatctaaattttattgatgtgagttttg 47115531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 2926701 - 2926782
Alignment:
Q  21 ctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatcta 102  Q
    |||||||||||||||||| ||||||| ||| ||  | |  ||||||  |||||||||||||| ||||||| || ||||||||    
T  2926701 ctctactctctttatcttgtttattctttgatttaattatggttttattttacacttgattgttagattagatatagatcta 2926782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 30670318 - 30670410
Alignment:
Q  61 ggttttgctttacacttgatt-gctagattaaatctagatctattggcgttgcttgcggttattttagttactggttgtcattgatacttgtt 152  Q
    |||||||||||||||||| || ||||||||||| ||| |||| ||   |||||||| |||  ||||  ||| ||||||| |||||||||||||    
T  30670318 ggttttgctttacacttggtttgctagattaaacctatatctgtttttgttgcttgaggtggttttgattattggttgttattgatacttgtt 30670410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 490297 - 490125
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||| |||||||||||||||  |||||  |||||| |  || ||||||||| |||||||| ||||||||||| |||||||| |||||  |||||||||||    
T  490297 ttctttactctctttatcttgattatt--ttggtttgtttgtggttttgctatacacttggttgctagattagatctagatatattgttgttgcttgcgg 490200  T
Q  119 ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagttgtcgaattca 200  Q
    ||||||       |||||| |||||||||||| | ||| ||||||||||| ||||  |||||||| | ||||  ||||||||    
T  490199 ttattt-------tggttgccattgatacttgctccacaaatctaaatttcattgacgtgagattagaagttaccgaattca 490125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 42261462 - 42261290
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||| |||||||||||||||  |||||  |||||| |  || ||||||||| |||||||| ||||||||||| |||||||| |||||  |||||||||||    
T  42261462 ttctttactctctttatcttgattatt--ttggtttgtttgtggttttgctatacacttggttgctagattagatctagatatattgttgttgcttgcgg 42261365  T
Q  119 ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagttgtcgaattca 200  Q
    ||||||       |||||| |||||||||||| | ||| ||||||||||| ||||  |||||||| | ||||  ||||||||    
T  42261364 ttattt-------tggttgccattgatacttgctccacaaatctaaatttcattgacgtgagattagaagttaccgaattca 42261290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 7451314 - 7451479
Alignment:
Q  26 ctctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcggttatttt 125  Q
    ||||||||||||| ||||||| ||||||||| || ||||||| | | |||||| || |||||||| |||||||| | |||   ||||||| |||||||      
T  7451314 ctctctttatcttgtttattctttggttcgattgtggttttgttatgcacttgttttctagattagatctagat-tgttgttattgcttgtggttattga 7451412  T
Q  126 a-----gttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
          |||| ||||||||||||| ||||| | ||||||||||||||| |||| |||||||||||||    
T  7451413 caagaggttattggttgtcattgaaacttgctccacgaatctaaatttcattgatgtgagatttgga 7451479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 30218024 - 30217860
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||||||||||||||| ||||||| |||||| || || |||| || |||||||||| || |||||||  |||||||  |  |   |||||||| ||    
T  30218024 ttctctactctctttatcttgtttattctttggtttgattgtggttgtgttttacacttggtttctagattggatctagaaatgattttgttgcttgtgg 30217925  T
Q  119 ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttg 185  Q
    || |||| |||| |||||||| ||||||  | || ||| ||||||||||  |||| |||||||||||    
T  30217924 ttgttttggttattggttgtcgttgata--ttttccacaaatctaaattccattgatgtgagatttg 30217860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 17450765 - 17450927
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||| ||||||||||||||| ||||| | |||||| || || ||||||||| | |||||| || ||||||||  | ||||| | |||  |||||||| |     
T  17450765 ttctgtactctctttatcttgtttatcctttggttagattgtggttttgctatgcacttggtttctagattaggtttagat-tgttgttgttgcttgtga 17450863  T
Q  119 ttat--tttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgag 180  Q
    ||    ||| ||||  ||||||||||||||||||  |||||||||||||||| |||||||||||    
T  17450864 tttacatttggttatcggttgtcattgatacttgcgtcacgaatctaaatttcattggtgtgag 17450927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 16676420 - 16676498
Alignment:
Q  21 ctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    ||||||| |||||||||  ||| ||| ||||||||| || ||||||| |||||||||  ||||||||||| ||||||||    
T  16676420 ctctactttctttatctagtttgttctttggttcgattgtggttttgatttacactttgttgctagattagatctagat 16676498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 33648459 - 33648528
Alignment:
Q  118 gttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
    |||||||| |||| |||||||||||||| |||  | ||||||||||||||| |||| | |||||||||||    
T  33648459 gttatttttgttattggttgtcattgattcttactccacgaatctaaatttcattgatatgagatttgga 33648528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 24398251 - 24398330
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    |||||||||||||||||||| |||| || ||||| ||| |||||||||||| | |||||  || |||||||| || |||||    
T  24398251 ttctctactctctttatcttgtttagtc-ttggtccgattgcggttttgctatgcacttagtttctagattagatttagat 24398330  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 22328369 - 22328202
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||||||||||||||| ||||||| || |||||| || ||||||| | | |||||| || || ||||| |||||||| | ||   |||  ||  ||    
T  22328369 ttctctactctctttatcttgtttattcttttgttcgattgtggttttgttatgcacttggtttctcgattagatctagat-tgtttttgttatttctgg 22328271  T
Q  119 ttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
    |||||||| ||| | ||||||||| ||||||  | ||||||||||||||| |||| |||||||||||||    
T  22328270 ttattttaattatttgttgtcattaatacttactccacgaatctaaatttcattgatgtgagatttgga 22328202  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 8359295 - 8359126
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||||||| ||||||| ||||| | |||||| || || ||||||||| | |||||| || |||||||| |||||||| | |||  |||||||| |     
T  8359295 ttctctactctcattatcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctagat-tgttgttgttgcttgtga 8359197  T
Q  119 tta--ttttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
    ||   ||||  ||  |||||| |||||||||||| | ||||||||||||||| ||||||||||| ||||||    
T  8359196 tttacttttgattgttggttgccattgatacttgctccacgaatctaaatttcattggtgtgaggtttgga 8359126  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 2390474 - 2390646
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||||||||||||||||||| ||||| | || ||| || || ||||||||| |||| ||| || |||||||| |||||||| | |||   ||| ||| ||    
T  2390474 ttctctactctctttatcttgtttatccttttgttggattgtggttttgctatacatttgttttctagattagatctagat-tgttgttattgattgtgg 2390572  T
Q  119 ttat-----tttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
    ||||     ||| |||| ||||||||||||||||||| | ||| ||||||||||| |||| |||||| ||||||    
T  2390573 ttatttacatttggttattggttgtcattgatacttgctccactaatctaaatttcattgatgtgaggtttgga 2390646  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 29608925 - 29609091
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggtttt-gctttacacttgattgctagattaaatctagatctattggcgttgcttgcg 117  Q
    |||||||||||||||||||| ||||| | ||| || || || |||||| | | | |||||| || ||| |||| |||||||| | |||  |||||||| |    
T  29608925 ttctctactctctttatcttgtttatcctttgcttagattgtggtttttgatatgcacttggtttctatattagatctagat-tgttgttgttgcttgtg 29609023  T
Q  118 gttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
    |||||||   ||  ||||||||||||||||||| | ||||||||||||||| |||  |||||| ||||||    
T  29609024 gttatttacatt--tggttgtcattgatacttgctccacgaatctaaatttcattaatgtgaggtttgga 29609091  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 465
Target Start/End: Original strand, 5468519 - 5468576
Alignment:
Q  408 accagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggctt 465  Q
    |||| |||||||| |||||||||||||||||| |||||||| ||  ||||||||||||    
T  5468519 accataggcgtgaaaaaaggtgcatggacatacgaggaagacaacttactcaaggctt 5468576  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 3259183 - 3259333
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    |||| ||||||||||||||| ||||||| |||||| || || ||||||||| | | | || || |||||||| |||||||| | |||   ||||||| ||    
T  3259183 ttctttactctctttatcttgtttattccttggttggattgtggttttgctatgcccgtgttttctagattagatctagat-tgttgttattgcttgtgg 3259281  T
Q  119 ttat-----tttagttactggttgtcattgatacttgtttcacgaatctaaa 165  Q
    ||||     ||| |||| ||||||||||||||||||| | | ||||||||||    
T  3259282 ttatttacatttggttattggttgtcattgatacttgctccccgaatctaaa 3259333  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 1360152 - 1360094
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacactt 77  Q
    ||||||| |||||||||||| ||| ||| || |||||| || |||||||||||||||||    
T  1360152 ttctctattctctttatcttgtttcttcttttgttcgattgtggttttgctttacactt 1360094  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 8452179 - 8452099
Alignment:
Q  18 attctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    ||||| |||||| |||||||| |  |||| ||||||||| || |||||||||||||| ||||||  ||||||| ||||||||    
T  8452179 attctttactctttttatcttgtc-attctttggttcgattgtggttttgctttacatttgatttttagattagatctagat 8452099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 43363446 - 43363321
Alignment:
Q  21 ctctactctctttatcttatttattcattggttcgaatgcggttt-tgctttacacttgattgctagattaaatctagatctattggcgttgcttgcggt 119  Q
    |||||||||||||||||| ||| ||| ||||||||| || ||||| |||||| ||  |  ||| ||||||| |||||||| | ||   |||||||| |||    
T  43363446 ctctactctctttatcttgtttgttctttggttcgattgtggtttgtgctttgcaaatagttgttagattagatctagatttgttattgttgcttgtggt 43363347  T
Q  120 tattttagttactggttgtcattgat 145  Q
     |||||||||| |||||  |||||||    
T  43363346 cattttagttattggttaccattgat 43363321  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 48599199 - 48599158
Alignment:
Q  132 tggttgtcattgatacttgtttcacgaatctaaatttaattg 173  Q
    ||||||||||||||||||| | ||||||||||||||| ||||    
T  48599199 tggttgtcattgatacttgctccacgaatctaaattttattg 48599158  T

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Target: scaffold0197 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 1370 - 1295
Alignment:
Q  24 tactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    ||||||||||||||||||||||  |||||| || || |||||| ||||||||||| || |||||||| ||||||||    
T  1370 tactctctttatcttatttattttttggtttgattgtggttttactttacacttggtttctagattagatctagat 1295  T

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Target: scaffold0236 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 10679 - 10848
Alignment:
Q  21 ctctactctcttt-atcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcggt 119  Q
    ||||||||||||| ||||| ||||||| ||| || || ||  ||||| || ||||||||||| ||||||||||||||||| | |||  |||||||| |||    
T  10679 ctctactctcttttatcttgtttattctttgattagattgtagttttactatacacttgatttctagattaaatctagat-tgttgttgttgcttgtggt 10777  T
Q  120 ta-----ttttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttg 185  Q
    ||     |||| ||||  |||||||||||||||||  | ||| ||||||||||| |||| |||||| ||||    
T  10778 tattttcttttggttatcggttgtcattgatactttctccacaaatctaaatttcattgatgtgaggtttg 10848  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 11660829 - 11660890
Alignment:
Q  56 aatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcg 117  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||| |||  ||||||||||    
T  11660829 aatgtggttttgctttacacttggttgctagattagatctagatctgttgttgttgcttgcg 11660890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 25073840 - 25073933
Alignment:
Q  108 gttgcttgcggttattttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttggagttgtcgaattcac 201  Q
    |||||||| ||||||||| |||| || || ||||||||||||||  |||||||||||| || |||  || |||||||||| ||| |||||||||    
T  25073840 gttgcttgtggttatttttgttattgattatcattgatacttgtcccacgaatctaaactttattaatgcgagatttggaattgccgaattcac 25073933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 5739963 - 5739843
Alignment:
Q  29 tctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcggttattttagt 128  Q
    |||||||||||||||| | ||| |||   || |||||||||||||||||| ||||||||||| || ||||| | |||  |||| ||  | ||||||| ||    
T  5739963 tctttatcttatttatgctttgattcagttgtggttttgctttacacttggttgctagattagatttagatatgttgttgttgattatgattattttggt 5739864  T
Q  129 tactggttgtcattgatactt 149  Q
    || | ||| ||||||||||||    
T  5739863 tattagttatcattgatactt 5739843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 26800776 - 26800946
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcgg 118  Q
    ||||||||||| |||||||| |||||   |||||| || || ||||||||| | |||||| || ||||| || |||||||| | |||   ||||||| ||    
T  26800776 ttctctactctttttatcttgtttatcttttggttagattgtggttttgctatgcacttgttttctagactagatctagat-tgttgttattgcttgtgg 26800874  T
Q  119 ttattt-----tagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttg 185  Q
    | ||||     | |||| |||||| |||||||||||| | ||||||||||||||| |||| |||||| ||||    
T  26800875 taatttacatttggttattggttgccattgatacttgctccacgaatctaaatttcattgatgtgaggtttg 26800946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 3808683 - 3808603
Alignment:
Q  19 ttctctactctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagat 99  Q
    |||||||||||||||||||| ||||| | |||||| || |  ||||||||| | || ||| || |||||||| ||||||||    
T  3808683 ttctctactctctttatcttgtttatcctttggttagattatggttttgctatgcatttgttttctagattagatctagat 3808603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 17758222 - 17758317
Alignment:
Q  28 ctctttatcttatttattcattggttcgaatgcggttttgctttacacttgattgctagattaaatctagatctattggcgttgcttgcggttattt 124  Q
    ||||||||||| ||||| | |||||| || || ||||||||| | |||||| || |||||||| |||||||| | |||   ||||||||||||||||    
T  17758222 ctctttatcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctagat-tgttgttattgcttgcggttattt 17758317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 3463 - 3399
Alignment:
Q  123 tttagttactggttgtcattgatacttgtttcacgaatctaaatttaattggtgtgagatttgga 187  Q
    |||||||| |||||| |||||||||||| | || |||||||||||| |||| |||||| ||||||    
T  3463 tttagttattggttgccattgatacttgctccatgaatctaaatttcattgatgtgaggtttgga 3399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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