View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_16 (Length: 490)
Name: NF17761_low_16
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 35474210 - 35473797
Alignment:
| Q |
19 |
agggtctggcccctgccatagagagggaccattttggtgtgagatatgccatccttgcaaactggacactgtggtggctcatcaggtgcgagagaggcac |
118 |
Q |
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| T |
35474210 |
agggtctggcccctgccatagagagggaccattttggtgtgagatatgccatccttgcaaactggacactgtggtggctcatcaggtgcaagagaggcac |
35474111 |
T |
|
| Q |
119 |
tttgcacaaagagccatttgtaaatacaggaccagcagtaaaggtgaccacagagtgtgactactggttcatgtgcaaagtctaagcagatattgcaatc |
218 |
Q |
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| T |
35474110 |
tttgcacaaagagccatttgtaaatacaggaccagcagtaaaggtgaccacagagtgtgactactggttcatgtgcaaagtctaagcagatattgcaatc |
35474011 |
T |
|
| Q |
219 |
aaaacaactgtcacaatttctttctgtttctgtgccagaatttggaatggctttccattcttgggtaaagaagtcttcatgctcaaaagccatttgttaa |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35474010 |
aaaacaactgtcacaatttttttctgtttctgtgccagaatttggaatggctttccattcttgggtaaagaagtcttcatgctcaaaagccatttgttaa |
35473911 |
T |
|
| Q |
319 |
tgaaccnnnnnnnngcaactttggttattactgnnnnnnnaacccctgaatatacaaaagaaaactggtttgttacactacaacaaagaaaggttatgag |
418 |
Q |
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|||||| |||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
35473910 |
tgaacc-tttttttgcaactttggttattagtgtttttttaacccctgaatatacaaaagaaaactagtttgttacactacaacaaagaaaggttctgag |
35473812 |
T |
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| Q |
419 |
ggcatcaagtgcata |
433 |
Q |
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| T |
35473811 |
ggcatcaagtgcata |
35473797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 22 - 305
Target Start/End: Complemental strand, 35467506 - 35467220
Alignment:
| Q |
22 |
gtctggcccctgccatagagagggaccattttggtgtgagatatgccatccttgcaaactggacactgtggtggctcatcaggtgcgagagaggcacttt |
121 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| || || || |||| |
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| T |
35467506 |
gtctggcctcttccatagagagggaccattttggtgtgagatatatcatgcttgcaaactggacactgtggatgctcatcaggtgcaagtgaagcccttt |
35467407 |
T |
|
| Q |
122 |
gcacaaagagccatttgtaaatacaggaccagcagtaaaggtgaccacagagtgtgactactggttcatgtgcaaagtctaagcagatattgcaatcaaa |
221 |
Q |
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||||||||||||||||||| || || ||||| ||| ||||||| ||||| | || ||||||||||| |||||||| ||||||||||| | ||||||||| |
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| T |
35467406 |
gcacaaagagccatttgtagatgcaagaccaacagaaaaggtggccacataaggttactactggttcgtgtgcaaaatctaagcagatgtggcaatcaaa |
35467307 |
T |
|
| Q |
222 |
acaactgtcacaatt-tctt--tctgtttctgtgccagaatttggaatggctttccattcttgggtaaagaagtcttcatgctcaaa |
305 |
Q |
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|||| ||||| ||| |||| ||||| ||||| |||||||| | |||||||||||||||| ||||||| |||||||||||||| |
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| T |
35467306 |
acaattgtcaatattctctttctctgtctctgtcacagaatttccatcggctttccattcttggttaaagaactcttcatgctcaaa |
35467220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 433 - 479
Target Start/End: Complemental strand, 35473777 - 35473731
Alignment:
| Q |
433 |
ataaacaaataatagagactaaaagtataagcaaattttgatttcat |
479 |
Q |
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| T |
35473777 |
ataaacaaataatagagactataagtataagcaaattttgatttcat |
35473731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 3663015 - 3663088
Alignment:
| Q |
150 |
ccagcagtaaaggtgaccacagagtgtgactactggttcatgtgcaaagtctaagcagatattgcaatcaaaac |
223 |
Q |
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| T |
3663015 |
ccagcagtaaaggtggccacaaagggtgactaccggttcgttggcgaagtctaagcagatgttacaatcaaaac |
3663088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 38394333 - 38394388
Alignment:
| Q |
130 |
agccatttgtaaatacaggaccagcagtaaaggtgaccacagagtgtgactactgg |
185 |
Q |
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||||||||||||||||||| ||||||||| || |||||||| || ||||| ||||| |
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| T |
38394333 |
agccatttgtaaatacagggccagcagtagagatgaccacaaagagtgaccactgg |
38394388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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