View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17761_low_17 (Length: 451)

Name: NF17761_low_17
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17761_low_17
NF17761_low_17
[»] chr8 (3 HSPs)
chr8 (5-436)||(44730108-44730547)
chr8 (52-315)||(44949771-44950037)
chr8 (49-231)||(45343002-45343184)
[»] scaffold0283 (1 HSPs)
scaffold0283 (52-315)||(5751-6017)
[»] chr2 (20 HSPs)
chr2 (49-196)||(44624819-44624966)
chr2 (50-196)||(44615447-44615593)
chr2 (49-229)||(39153096-39153276)
chr2 (48-234)||(39371153-39371339)
chr2 (49-235)||(39472723-39472909)
chr2 (49-234)||(39216694-39216879)
chr2 (49-194)||(39396652-39396797)
chr2 (54-235)||(39138688-39138866)
chr2 (53-175)||(44895126-44895248)
chr2 (64-255)||(39412968-39413159)
chr2 (49-171)||(39205765-39205887)
chr2 (51-192)||(39380496-39380637)
chr2 (49-194)||(39196510-39196655)
chr2 (70-175)||(39478313-39478418)
chr2 (50-124)||(39387564-39387638)
chr2 (65-194)||(39223764-39223893)
chr2 (219-299)||(44615625-44615705)
chr2 (54-144)||(39188804-39188894)
chr2 (50-120)||(39421257-39421327)
chr2 (53-121)||(39604357-39604425)
[»] chr5 (2 HSPs)
chr5 (50-231)||(17060684-17060865)
chr5 (49-194)||(33562326-33562471)
[»] chr7 (3 HSPs)
chr7 (349-436)||(35376402-35376495)
chr7 (53-217)||(19808944-19809105)
chr7 (336-429)||(40236171-40236270)
[»] chr6 (1 HSPs)
chr6 (359-425)||(30665430-30665498)


Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 5 - 436
Target Start/End: Original strand, 44730108 - 44730547
Alignment:
Q  5 gagaagcataggatctagcgaaaatagttttggatataacactgccttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaa 104  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44730108 gagaatcatcggatctagcgaaaatagttttggatataacactgcattgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaa 44730207  T
Q  105 agaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgatttatagattgcttacttactttgatggagatgaagtctctgagctt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44730208 agaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgatttatagattgcttacttactttgatggagatgaagtctctgagctt 44730307  T
Q  205 tacgcatctgttgttgaacacaagatagctgcgaaggtgtttaggaccctgcattttgtgaataaagtctctcgtaagttgattaagaaattcttcaatt 304  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44730308 tacgcatctgttgttgaacacaagatagctgcgaatgtgtttaggaccctgcattttgtgaataaagtctctcgtaagttgattaagaaattcttcaatt 44730407  T
Q  305 agtcagttactaagcaacataatccttacgta--------aagttaaagaatgataaaggggaaaggagaataagaactatctgagaaggagaatcagaa 396  Q
    ||||||||||||||||||||||||||||||||        ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44730408 agtcagttactaagcaacataatccttacgtacgttatagaagttaaagaaggataaaggggaaaggagaataagaactatctgagaaggagaatcagaa 44730507  T
Q  397 tttcattaacatattccatgccttctttcaatgtcttctt 436  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  44730508 tttcattaacatattccatgccttctttcaatctcttctt 44730547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 52 - 315
Target Start/End: Complemental strand, 44950037 - 44949771
Alignment:
Q  52 tgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattt 151  Q
    ||||| ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||||| |||||||||| ||||||||||||||     
T  44950037 tgtgttagagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgatta 44949938  T
Q  152 tgacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaagatagctgcgaaggtgtttaggac 251  Q
    | ||||||||| |||||||||||||||||||| ||||||| |||||| ||||||| |||||||||| ||||||||| ||||||| |||||||||||||||    
T  44949937 taacgatttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctgaacacaatatagctgtgaaggtgtttaggac 44949838  T
Q  252 cctgcattttgtgaataaagtctctcgtaa---gttgattaagaaattcttcaattagtcagttact 315  Q
    |||| ||||||| |||| ||||||||||||   ||||||| |||||||||||||||| |||||||||    
T  44949837 cctggattttgtaaatatagtctctcgtaagttgttgattcagaaattcttcaattaatcagttact 44949771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 49 - 231
Target Start/End: Original strand, 45343002 - 45343184
Alignment:
Q  49 ccttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattga 148  Q
    |||||||||||||| ||||| || |||||||||| |||||||||||||||| | |||| |||||||||||| || | | | ||||| || |||||| |||    
T  45343002 ccttgtgtaagagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaatactgaaaaatcattgaacgttcttggttttctactga 45343101  T
Q  149 ttttgacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaagata 231  Q
    ||||| | ||| ||  |||||||||||  ||||||  |||||||||||  |||||||  | |||||||||| | |||||||||    
T  45343102 ttttgtcaattcatgtattgcttacttcttttgataaagatgaagtcttggagctttttgtatctgttgttcagcacaagata 45343184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 52 - 315
Target Start/End: Complemental strand, 6017 - 5751
Alignment:
Q  52 tgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattt 151  Q
    ||||| ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||||| |||||||||| ||||||||||||||     
T  6017 tgtgttagagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgatta 5918  T
Q  152 tgacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaagatagctgcgaaggtgtttaggac 251  Q
    | ||||||||| |||||||||||||||||||| ||||||| |||||| ||||||| |||||||||| ||||||||| ||||||| |||||||||||||||    
T  5917 taacgatttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctgaacacaatatagctgtgaaggtgtttaggac 5818  T
Q  252 cctgcattttgtgaataaagtctctcgtaa---gttgattaagaaattcttcaattagtcagttact 315  Q
    |||| ||||||| |||| ||||||||||||   ||||||| |||||||||||||||| |||||||||    
T  5817 cctggattttgtaaatatagtctctcgtaagttgttgattcagaaattcttcaattaatcagttact 5751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 44624819 - 44624966
Alignment:
Q  49 ccttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattga 148  Q
    |||||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||    
T  44624819 ccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattga 44624918  T
Q  149 ttttgacgatttatagattgcttacttactttgatggagatgaagtct 196  Q
    ||||| |||||||| |||||| |||||| ||||||| |||||||||||    
T  44624919 ttttgtcgatttatggattgcatacttattttgatgaagatgaagtct 44624966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 44615447 - 44615593
Alignment:
Q  50 cttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgat 149  Q
    ||||||||||||||||||| |||||||||||   |||||||||||||||||| ||||||||||| |||||||||| ||||| ||| ||||||||||||||    
T  44615447 cttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgat 44615546  T
Q  150 tttgacgatttatagattgcttacttactttgatggagatgaagtct 196  Q
    |||  |||||||  ||||| ||| ||||||||||| |||||||||||    
T  44615547 tttatcgatttacggattggttaattactttgatgaagatgaagtct 44615593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 39153096 - 39153276
Alignment:
Q  49 ccttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattga 148  Q
    |||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||||||||||||||||||||||| || |||||| || |||||| ||     
T  39153096 ccttgtgtaagagaagaagcattgaaactcgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactgg 39153195  T
Q  149 ttttgacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaaga 229  Q
    ||||| |||||||| ||||| ||||||  || |||  |||||||||||  |||||||  |||| ||||| | |||||||||    
T  39153196 ttttgtcgatttatggattggttacttctttcgataaagatgaagtcttggagctttttgcatttgttgctcaacacaaga 39153276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 39371153 - 39371339
Alignment:
Q  48 gccttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattg 147  Q
    ||||||||||||||||||||| ||||||||||||| |||  ||||||| ||||| |||||||||| | ||||| ||| || |||||| || |||||||||    
T  39371153 gccttgtgtaagagatgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattg 39371252  T
Q  148 attttgacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaagatagct 234  Q
     ||||| | | |||| ||||| ||||||  ||||||| ||||||| | |  |||||||  |||| ||||| ||| ||||||||||||    
T  39371253 cttttgtcaaattatggattggttacttcttttgatgaagatgaacttttggagctttttgcatttgttgctgagcacaagatagct 39371339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 49 - 235
Target Start/End: Complemental strand, 39472909 - 39472723
Alignment:
Q  49 ccttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattga 148  Q
    |||||||||| | | || || |||||||| |||| ||| ||||||| |||||| |||||||||||||||||||||| ||  ||||| || |||||| ||     
T  39472909 ccttgtgtaaaaaaagacgcattgaagctcgcacttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgc 39472810  T
Q  149 ttttgacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaagatagctg 235  Q
    ||||| | ||||||  |||||||||||  ||||||| |||||||||||  ||||| | ||||| ||||| | | |||||||||||||    
T  39472809 ttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaagatagctg 39472723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 39216694 - 39216879
Alignment:
Q  49 ccttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattga 148  Q
    |||||||||||||| ||||| ||||||||||||  ||| |||||| ||||||| |  ||||||||| ||||||||| || ||||||||| |||||  ||     
T  39216694 ccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgc 39216793  T
Q  149 ttttgacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaagatagct 234  Q
    ||||| | |||||| ||||| ||||||  |||| || ||||||||| |  |||||||  |||||||||| | | ||||||||||||    
T  39216794 ttttgtcaatttatggattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagct 39216879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 39396797 - 39396652
Alignment:
Q  49 ccttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattga 148  Q
    |||||||||||||| |||||  |||||||||||||||| |||| |||| |||| | |||||||||||||||||||| || |||||| || ||| | |||     
T  39396797 ccttgtgtaagagaagaagcactgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgc 39396698  T
Q  149 ttttgacgatttatagattgcttacttactttgatggagatgaagt 194  Q
    ||||| | |||||| ||||||||||||  || |||| |||||||||    
T  39396697 ttttgtcaatttatggattgcttacttctttcgatgaagatgaagt 39396652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 39138688 - 39138866
Alignment:
Q  54 tgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttg 153  Q
    ||||||||| ||||| ||||||||||||| | |  ||||||||||||| |||   |||||||||||||||  || ||||||||| |||||| ||||||||    
T  39138688 tgtaagagaagaagcattgaagctagcacttaatctgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttg 39138784  T
Q  154 acgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaagatagctg 235  Q
     |  |||||  |||||||||||| ||||||| |||||||||||  ||||||| | ||| ||||| | | ||||||| |||||    
T  39138785 tcagtttatgaattgcttacttattttgatgaagatgaagtcttggagcttttcacatttgttgctcagcacaagacagctg 39138866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 44895248 - 44895126
Alignment:
Q  53 gtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgatttt 152  Q
    ||||||||||  |||| ||||||||||||||| | || |||||||||||||||| ||||||||||||||||| || |||||| || |||||| || ||||    
T  44895248 gtgtaagagaacaagcattgaagctagcacataaattcaaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgctttt 44895149  T
Q  153 gacgatttatagattgcttactt 175  Q
    | | |||||| ||||| ||||||    
T  44895148 gtcaatttatggattgattactt 44895126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 255
Target Start/End: Complemental strand, 39413159 - 39412968
Alignment:
Q  64 gaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgatttata 163  Q
    ||||| ||||||||||||| ||| |||||||||||| | ||||||||||| ||||| |||| || ||||||  | ||||| ||| ||||| |  ||| |     
T  39413159 gaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttgtg 39413060  T
Q  164 gattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaagatagctgcgaaggtgtttaggaccctg 255  Q
    ||||| ||||||  || |||| ||||||| |||  |||||||  |||| ||||| | |||||||||||||||||||| ||||| | ||||||    
T  39413059 gattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgctcaacacaagatagctgcgaagctgtttggaaccctg 39412968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 39205887 - 39205765
Alignment:
Q  49 ccttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattga 148  Q
    |||||||| |||||  |||| ||||||||||||  ||| ||||||||||| || |||||||||||||||||||||  || |||||| || |||||| ||     
T  39205887 ccttgtgtgagagaaaaagcattgaagctagcatttgacttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgc 39205788  T
Q  149 ttttgacgatttatagattgctt 171  Q
    ||||| ||||||||| |||||||    
T  39205787 ttttgtcgatttataaattgctt 39205765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 39380637 - 39380496
Alignment:
Q  51 ttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgatt 150  Q
    |||||||||||| |||||  ||| |||||||| ||| ||||||||| |||||| ||| ||||||||| |||||  || |||||| ||||||||| || ||    
T  39380637 ttgtgtaagagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgctt 39380538  T
Q  151 ttgacgatttatagattgcttacttactttgatggagatgaa 192  Q
    ||| | |||||| ||||||||||||  || |||| |||||||    
T  39380537 ttgtcaatttatggattgcttacttctttcgatgaagatgaa 39380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 39196655 - 39196510
Alignment:
Q  49 ccttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattga 148  Q
    |||||||| ||| | ||||| ||||||||||||  ||| |||||||||||||| || || |||||||||||||||| || |||||| || |||||  ||     
T  39196655 ccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgc 39196556  T
Q  149 ttttgacgatttatagattgcttacttactttgatggagatgaagt 194  Q
    ||||| | ||||||| |||||||  ||  ||||||| |||||||||    
T  39196555 ttttgtcaatttataaattgcttgattcttttgatgaagatgaagt 39196510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 39478418 - 39478313
Alignment:
Q  70 ttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgatttatagattgc 169  Q
    ||||||||||||||||| ||||||||| |||| | |||||||||||||||||||| ||  ||||| |  |||||| || ||||| | |||||| ||||||    
T  39478418 ttgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggattgc 39478319  T
Q  170 ttactt 175  Q
    ||||||    
T  39478318 ttactt 39478313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 39387638 - 39387564
Alignment:
Q  50 cttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattctt 124  Q
    ||||||||| | | ||||| ||||||||||| | ||| || ||||||||||| ||||||||||||||||||||||    
T  39387638 cttgtgtaaaaaaagaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaatactgaaaattctt 39387564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 39223764 - 39223893
Alignment:
Q  65 aagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgatttatag 164  Q
    |||| |||||||||||| |||| || ||||  ||||| ||||| ||||||||||| |||| || |||||| || |||||  || ||||| | |||||||     
T  39223764 aagcattgaagctagcatatgatttaaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataa 39223863  T
Q  165 attgcttacttactttgatggagatgaagt 194  Q
    |||||||  ||  ||||||| |||||||||    
T  39223864 attgcttgattcatttgatgaagatgaagt 39223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 44615625 - 44615705
Alignment:
Q  219 tgaacacaagatagctgcgaaggtgtttaggaccctgcattttgtgaataaagtctctcgtaagttgattaagaaattctt 299  Q
    |||| |||||||||||| |||| ||| |||||| |||  |||||  |||||||||||| ||| ||||||| ||||||||||    
T  44615625 tgaatacaagatagctgtgaagctgtgtaggacactgggttttgcaaataaagtctctggtatgttgatttagaaattctt 44615705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 39188894 - 39188804
Alignment:
Q  54 tgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttcta 144  Q
    ||||||||| || ||  |||| ||||||| ||| || ||||||||||| |||||||||| || |||||||| || |||||| || ||||||    
T  39188894 tgtaagagaggatgcaatgaaactagcacttgatttaaaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttcta 39188804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 39421327 - 39421257
Alignment:
Q  50 cttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaat 120  Q
    ||||||||| ||| ||||| |||||||| || | ||| ||||||||||| ||  |||||||||||||||||    
T  39421327 cttgtgtaaaagaagaagcattgaagctcgctcttgatttgaaagctaatatggaagaaaatactgaaaat 39421257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 39604357 - 39604425
Alignment:
Q  53 gtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaatt 121  Q
    |||||||||| |||||  |||||||||||| | | |||||| |||||||||  |||||||| |||||||    
T  39604357 gtgtaagagaagaagcaatgaagctagcacttaatttgaaatctaacataagtgaaaataccgaaaatt 39604425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 17060684 - 17060865
Alignment:
Q  50 cttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgat 149  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |||||||||||||||||| |||||    
T  17060684 cttgtgtaaaagacgaagctttgaagctagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgat 17060783  T
Q  150 tttgacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaagata 231  Q
     ||| || ||||| ||||| ||||||| ||||||  |||||||||||  || ||||  |||||||||| ||| |||||||||    
T  17060784 cttgtcggtttatggattgtttacttattttgatcaagatgaagtcttggatctttttgcatctgttgctgagcacaagata 17060865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 33562326 - 33562471
Alignment:
Q  49 ccttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattga 148  Q
    |||||||| ||| | ||||| ||||||||||||  ||| |||||||||||||| |||||||||||||||  || || || |||||| || |||||  ||     
T  33562326 ccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgc 33562425  T
Q  149 ttttgacgatttatagattgcttacttactttgatggagatgaagt 194  Q
    ||||| | ||||||| |||||||  ||  ||||||| |||||||||    
T  33562426 ttttgtcaatttataaattgcttgattcttttgatgaagatgaagt 33562471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 349 - 436
Target Start/End: Original strand, 35376402 - 35376495
Alignment:
Q  349 gataaaggggaaaggagaataagaactatctgag------aaggagaatcagaatttcattaacatattccatgccttctttcaatgtcttctt 436  Q
    ||||||||||||||| |||||||||||||| |||      |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35376402 gataaaggggaaaggggaataagaactatcagaggaggagaaggagaatcagaatttcattaacatattcaatgccttctttcaatgtcttctt 35376495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 217
Target Start/End: Original strand, 19808944 - 19809105
Alignment:
Q  53 gtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgatttt 152  Q
    |||||||||| ||| | ||||||||||||| ||| |||||||||||||| |||   | |||||||||||||  || |||||| || |||||| || ||||    
T  19808944 gtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa---agtactgaaaattctctggtggttcttggttttctactgctttt 19809040  T
Q  153 gacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttg 217  Q
    | |  |||||  |||||||||||| ||||||| |||||||||||  ||||||| ||||| |||||    
T  19809041 gtcagtttatgaattgcttacttattttgatgaagatgaagtcttggagcttttcgcatttgttg 19809105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 429
Target Start/End: Original strand, 40236171 - 40236270
Alignment:
Q  336 aaagttaaagaatgataaaggggaaaggagaataagaactatctgagaaggagaa------tcagaatttcattaacatattccatgccttctttcaatg 429  Q
    |||| ||||||| ||||||||||||| ||||||||||| |||  ||||| |||||      |||||||||||||||||||||| ||||| ||||||||||    
T  40236171 aaagataaagaaggataaaggggaaaagagaataagaattatgagagaaagagaaggagggtcagaatttcattaacatattcaatgccctctttcaatg 40236270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 425
Target Start/End: Original strand, 30665430 - 30665498
Alignment:
Q  359 aaaggagaataagaactatctgag---aaggagaatcagaatttcattaacatattccatgccttctttc 425  Q
    ||||| |||||||||||||| |||   ||||||||||||||||||| | |||||||| ||||||||||||    
T  30665430 aaaggggaataagaactatcagaggagaaggagaatcagaatttca-tcacatattcaatgccttctttc 30665498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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