View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_18 (Length: 444)
Name: NF17761_low_18
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 172 - 419
Target Start/End: Original strand, 22042567 - 22042815
Alignment:
| Q |
172 |
aagtttaacaacagtgcagagtagtataacaa-attaaaatcagcagttaggaaagctgaaaatatagaatacctgatatggaagatgtacagtttcaaa |
270 |
Q |
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| T |
22042567 |
aagtataacaacagtgcagagtagtataacaacagtgcag--agcagttaggaaagctgaaaatatagaatacctgatatggaagatgtacagtttcaaa |
22042664 |
T |
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| Q |
271 |
acctcccaaaacttgtcttttaagtacaacacgatatccagccatttgaagtggaaagagttgtgaaagatgatgtagttatattttttattgtgaacat |
370 |
Q |
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| T |
22042665 |
acctcctagaatttgtcttttaagtacaacacgatatccagccatttgaagtggaaagagttgttaaagatgatgtagttatattttttattgtgaagat |
22042764 |
T |
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| Q |
371 |
tcaattatgtcaatatatggtttatatagaaag--atatatggagagaaaa |
419 |
Q |
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| T |
22042765 |
gcaataatgtcaagagatgggttatatataaagatatatatggagagaaaa |
22042815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 22042452 - 22042561
Alignment:
| Q |
18 |
aagttacatggtgactttttccattaatatctatcagattccaaactagtttcaaattgtcgaattcttcaagaaactttgggttcacttcgccgaattc |
117 |
Q |
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||||| ||||||||||||||||||||| |||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22042452 |
aagttgcatggtgactttttccattaacatctatgagattccaaactggattcaaatcatcgaattcttcaagaaactttgggttcacttcgccgaattc |
22042551 |
T |
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| Q |
118 |
ctgtgcacat |
127 |
Q |
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| T |
22042552 |
ttgtgcacat |
22042561 |
T |
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