View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_20 (Length: 438)
Name: NF17761_low_20
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 41793384 - 41793679
Alignment:
| Q |
12 |
agagatgaatgaagaataatgaaagctacatagcatgttatgagtccacgtacgtgtggttgtatcatatggcgagggttgctcttatagtataaattat |
111 |
Q |
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| T |
41793384 |
agagatgaatgaaggataatgaaagctacatagcatgttatgagtccacgtacgtgtggttgtatcatatggcgagggttgctcttatagtataaattat |
41793483 |
T |
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| Q |
112 |
tgattgtcatggtttagagaagtcattttctgatgtagtataaaactaagcacatgaacgtgtatgcatgaattgcatattgatgaagacatgcaattga |
211 |
Q |
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| T |
41793484 |
tgattgtcatggtttagagaagtcattttctgatgtagtataaaactaagcacatgaacgtgtatgcatgaattgcatattgatgaagacatgcaattga |
41793583 |
T |
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| Q |
212 |
tatgatttttcatttgatcgtaccaataatgcatattttatactcaataatgaagtgggtctaagagttttgcaacaaaatcaagtactcctatat |
307 |
Q |
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| T |
41793584 |
tatgatttttcatttgatcgtaccaataatgcatattttatactcaataatgaagtgggtctaagagttttgcaacaaaatcaagtactcctatat |
41793679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 363 - 423
Target Start/End: Original strand, 41793691 - 41793751
Alignment:
| Q |
363 |
aatcgcctattctgccattccctcaagcattcaattttccaatcagttcacaattcaaaat |
423 |
Q |
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| T |
41793691 |
aatcacctattctgccattccctcaagcattcaattttccaatcagttcacaattcaaaat |
41793751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 189 - 307
Target Start/End: Original strand, 41763153 - 41763270
Alignment:
| Q |
189 |
tattgatgaagaca-tgcaattgatatgatttttcatttgatcgtaccaataatgcatattttatactcaataatgaagtgggtctaagagttttgcaac |
287 |
Q |
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| T |
41763153 |
tattgatgaagacaatataattgataggtttttgcatttgatcataccaataatgcat--tatatactcaataatgaagcgggtctgacaatttggcaac |
41763250 |
T |
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| Q |
288 |
aaaatcaagtactcctatat |
307 |
Q |
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||||| |||||||||||||| |
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| T |
41763251 |
aaaataaagtactcctatat |
41763270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 275
Target Start/End: Original strand, 41797210 - 41797356
Alignment:
| Q |
120 |
atggtttaga-gaagtcattttctgatgtagtataaaactaagcacatgaacgtgtatgcatgaattgcatattgatgaagacatgcaattgata-tgat |
217 |
Q |
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| T |
41797210 |
atggtttagaagaagtcattttctgatgtg---taaaactaagcacatgaacgtgtatgttggaatcgc--attgatgaaga----caattgatattgat |
41797300 |
T |
|
| Q |
218 |
ttttcatttgatcgtaccaataatgcatattttatactcaataatgaagtgggtctaa |
275 |
Q |
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||||| ||||||| || ||||||| | ||| |||| ||||||||||||||||||||| |
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| T |
41797301 |
ttttcctttgatcatatcaataat--acattatatagtcaataatgaagtgggtctaa |
41797356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 41762995 - 41763124
Alignment:
| Q |
11 |
cagagatgaatgaagaataatg---aaagctacatagc-atgttatgagtccacgtacgtgtggttgtatcatatggcgagggttgctcttatagt---- |
102 |
Q |
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| T |
41762995 |
cagagatgaatgaagaataatgatcaaagctacatagcaatgttatgaatcc----acgtgtggttgtatcatgtggcaagggcgtcccttataatttta |
41763090 |
T |
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| Q |
103 |
-ataaattattgattgtcatggtttagagaagtc |
135 |
Q |
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| T |
41763091 |
gataaattattgattggcatggtttagagaagtc |
41763124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 7994624 - 7994595
Alignment:
| Q |
305 |
tatggtgaagtttagcatgggaaaggctaa |
334 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7994624 |
tatggtgaagtttagcatgggaaaggctaa |
7994595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 334
Target Start/End: Complemental strand, 18290545 - 18290517
Alignment:
| Q |
306 |
atggtgaagtttagcatgggaaaggctaa |
334 |
Q |
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| T |
18290545 |
atggtgaagtttagcatgggaaaggctaa |
18290517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 26006144 - 26006172
Alignment:
| Q |
306 |
atggtgaagtttagcatgggaaaggctaa |
334 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
26006144 |
atggtgaagtttagcatgggaaaggctaa |
26006172 |
T |
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