View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17761_low_21 (Length: 437)
Name: NF17761_low_21
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_21 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 27147939 - 27148375
Alignment:
| Q |
1 |
tcatattgaattgaaatggataaagcatggtcttccctttctaccaccatagattcaaacaagttctcagacaaatccacatctatcaagactctagcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27147939 |
tcatattgaattgaaatggataaagcatggtcttccctttctaccaccacagattcaaacaagttctcagacaaatccacatctttcaagactctagcaa |
27148038 |
T |
|
| Q |
101 |
aagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgtttttcccagtattctgg |
200 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27148039 |
aaataccaaaacgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgtttttcccagtattcttg |
27148138 |
T |
|
| Q |
201 |
aggtacgttcagaaatcttatccagatttgtgcatgagtttgtaattgagcttgaggtgcaaaatcctttgaccaacggtaaaagcgcatcaaccaaggc |
300 |
Q |
| |
|
||||| |||||||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
27148139 |
aggtaggttcagaaatcttacccaaatttgtgcatgaatttgtgattgagcttgaggtgcaaaatcctttgaccaacagtaaaagtgcatcaaccaaggc |
27148238 |
T |
|
| Q |
301 |
ttgagattaatggttccaaaggcccaaattcgacgcatgtcttccactgaattgaaattgagctcgaagaaaccctttccaagcggaatcaaattccaat |
400 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27148239 |
ttgagattaacggttccaagggcccaaatttgacgcatgtcttccactgaattgaaattgagctcgaagaaaccctttccaagcggaatcaaattccaat |
27148338 |
T |
|
| Q |
401 |
tttgcaattgaggccactgattgctgagttttgcttt |
437 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
27148339 |
ttttcaattgaggccattgattgctgagttttgcttt |
27148375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 9446008 - 9445589
Alignment:
| Q |
1 |
tcatattgaattgaaatggataaagcatggtcttccctttctaccaccatagattcaaaca-agttctcagacaaatccacatctatcaagactctagca |
99 |
Q |
| |
|
|||||||| ||||| || || |||||||| |||||||| ||||| |||| | ||||||||| || | ||||||||||| ||||| | ||| || |||||| |
|
|
| T |
9446008 |
tcatattggattgatattgacaaagcatgatcttccctctctactaccacatattcaaacatagat-tcagacaaatcaacatcaaccaataccctagca |
9445910 |
T |
|
| Q |
100 |
aaagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgtttttcccagtattctg |
199 |
Q |
| |
|
|| ||| || ||||||||| || ||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
9445909 |
aagatactaatacgtctatgtagtatagcttcataaattgacaaaggtgtgcccaaacctgatgctatttcaaacaatgtctgtttctcccaatattcct |
9445810 |
T |
|
| Q |
200 |
gaggtacgttcagaaatcttatccagatttgtgcatgagtttgtaattgagcttgaggtgcaaaatcctttgaccaacggtaaaagcgcatcaaccaagg |
299 |
Q |
| |
|
|| || |||||||||||||| ||| ||||||||||| ||||| ||||||| ||||||| |||||||||||||| | || | ||||| ||||| ||| |
|
|
| T |
9445809 |
aagttaagttcagaaatcttacccaaatttgtgcatgtgtttgagattgagcgtgaggtgtgaaatcctttgaccagcaatagaggcgcagcaacccagg |
9445710 |
T |
|
| Q |
300 |
cttgagattaatggttccaaaggcccaaattcgacgcatgtcttccactgaattgaaattgagctcgaagaaaccctttccaagcggaatcaaattccaa |
399 |
Q |
| |
|
||||||||||| |||||| |||||||| || | ||| ||||| | || ||||| |||||||| || || ||||||||||| ||| ||| ||||||| |
|
|
| T |
9445709 |
cttgagattaaccattccaagagcccaaatccgtcacatatcttcaatagagttgaatttgagctcaaaaaagccctttccaagaggagtcagattccaa |
9445610 |
T |
|
| Q |
400 |
ttttgcaattgaggccactga |
420 |
Q |
| |
|
||||| || |||||||||||| |
|
|
| T |
9445609 |
ttttgtaactgaggccactga |
9445589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 31319110 - 31319042
Alignment:
| Q |
348 |
tgaattgaaattgagctcgaagaaaccctttccaagcggaatcaaattccaattttgcaattgaggcca |
416 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||| ||||||||| |||||||||| ||||| ||||| |
|
|
| T |
31319110 |
tgaattgaaattaagctcaaagaaacccttaccaaggggaatcaaactccaattttgtaattggggcca |
31319042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 15485433 - 15485869
Alignment:
| Q |
1 |
tcatattgaattgaaatggataaagcatggtcttccctttctaccaccatagattcaaacaagttctcagacaaatccacatctatcaagactctagcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15485433 |
tcatattgaattgaaatggataaagcatggtcttccctttctaccaccacagattcaaacaagttctcaaacaaatccacatctatcaagactctagcaa |
15485532 |
T |
|
| Q |
101 |
aagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgtttttcccagtattctgg |
200 |
Q |
| |
|
|| ||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15485533 |
aaataccaaaacgtctacgttgtgtagtttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgtttttcccagtattcttg |
15485632 |
T |
|
| Q |
201 |
aggtacgttcagaaatcttatccagatttgtgcatgagtttgtaattgagcttgaggtgcaaaatcctttgaccaacggtaaaagcgcatcaaccaaggc |
300 |
Q |
| |
|
||||| ||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
15485633 |
aggtaggtttagaaatcttacccagatttgagcatgagtttgtgattgagcttgaggtgcaaaatcctttgaccaacagtaaaagcgcatcaacccaggc |
15485732 |
T |
|
| Q |
301 |
ttgagattaatggttccaaaggcccaaattcgacgcatgtcttccactgaattgaaattgagctcgaagaaaccctttccaagcggaatcaaattccaat |
400 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15485733 |
ttgagattaattgttccaagggcccaaatttgacgcatgtcttccaccgaattgaaattgagctcgaagaaacccttttcaagcggaatcaaattccaat |
15485832 |
T |
|
| Q |
401 |
tttgcaattgaggccactgattgctgagttttgcttt |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15485833 |
tttgcaattgaggccactgattgctgagttttgcttt |
15485869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 25876921 - 25876506
Alignment:
| Q |
1 |
tcatattgaattgaaatggataaagcatggtcttccctttctaccaccatagattcaaacaagttctcagacaaatccacatctatcaaga-ctctagca |
99 |
Q |
| |
|
|||||||| ||||| | || |||||||| || ||||| || ||||| | ||||||||||| | |||||||||| |||||| | ||||| ||| ||| |
|
|
| T |
25876921 |
tcatattggattgatacagacaaagcatgatcatccctctccaccacaacagattcaaacattgtttcagacaaattcacatcaa-caagaactcgtgca |
25876823 |
T |
|
| Q |
100 |
aaagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgtttttcccagtattctg |
199 |
Q |
| |
|
||| | || || |||||||||||||| || |||||||| |||||||| |||||||| ||||||||||||||||| || || ||||| ||||| |||||| |
|
|
| T |
25876822 |
aaaattcccaaacgtctatgttgtgtggcctcatcaattgataaaggcgtgcccaatcctgaagctatttcaaataatgtatgtttctcccaatattctt |
25876723 |
T |
|
| Q |
200 |
gaggtacgttcagaaatcttatccagatttgtgcatgagtttgtaattgagcttgaggtgcaaaatcctttgaccaacggtaaaagcgcatcaaccaagg |
299 |
Q |
| |
|
|||| | ||| |||||||||| ||| | |||||||||||| || ||||||||||||||||||||||||| ||||| | || ||||||| ||| | ||| |
|
|
| T |
25876722 |
gaggaaggtttagaaatcttacccaaacttgtgcatgagtctgagattgagcttgaggtgcaaaatccttggaccagcaatagaagcgcaacaatccagg |
25876623 |
T |
|
| Q |
300 |
cttgagattaatggttccaaaggcccaaattcgacgcatgtcttccactgaattgaaattgagctcgaagaaaccctttccaagcggaatcaaattccaa |
399 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||||||||||| ||||| ||||| ||| ||||| ||||| || || | ||||||| ||||||| |
|
|
| T |
25876622 |
cttgagattaacagttccaagagcccaaattctacgcatgtcttcaactgagttgaatctgaattcgaaaaaacctttccctaaaggaatcagattccaa |
25876523 |
T |
|
| Q |
400 |
ttttgcaattgaggcca |
416 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
25876522 |
ttgagcaattgaggcca |
25876506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 244
Target Start/End: Original strand, 22453458 - 22453581
Alignment:
| Q |
121 |
tgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgtttttcccagtattctggaggtacgttcagaaatctta |
220 |
Q |
| |
|
||||||||||||||||||| ||||| || |||| |||||| || ||||||||||| || ||||||||||| |||||| |||||| ||||| || |||| |
|
|
| T |
22453458 |
tgtgtagcttcatcaatggtcaaaggggtacccagacctgatgcaatttcaaacaacgtttgtttttcccaatattcttgaggtaagttcatgaacctta |
22453557 |
T |
|
| Q |
221 |
tccagatttgtgcatgagtttgta |
244 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22453558 |
cccagatttgtgcatgagtttgta |
22453581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 14046517 - 14046398
Alignment:
| Q |
53 |
attcaaacaagttctcagacaaatccacatctatcaagactctagcaaaagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcc |
152 |
Q |
| |
|
|||||||||| |||||| |||||||||||| || || |||||||||||| ||||||| |||| |||||||| |||||||| | | ||||||||| |
|
|
| T |
14046517 |
attcaaacaatttctcactcaaatccacatcaattaacactctagcaaaaagcccaaatctcctattctgtgtagcatcatcaatagtaagaggtgtgcc |
14046418 |
T |
|
| Q |
153 |
caaacctgaagctatttcaa |
172 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
14046417 |
taaaccagaagctatttcaa |
14046398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 416
Target Start/End: Complemental strand, 11774725 - 11774658
Alignment:
| Q |
349 |
gaattgaaattgagctcgaagaaaccctttccaagcggaatcaaattccaattttgcaattgaggcca |
416 |
Q |
| |
|
||||| ||||||| ||| || |||||||| ||||| ||||| | ||||||||| |||||||||||||| |
|
|
| T |
11774725 |
gaattaaaattgaactcaaaaaaacccttaccaagaggaattagattccaattctgcaattgaggcca |
11774658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 66665 - 66244
Alignment:
| Q |
1 |
tcatattgaattgaaatggataaagcatggtcttccctttctaccaccatagattcaaacaagttctcagacaaatccacatctatcaagactctagcaa |
100 |
Q |
| |
|
||||| |||| |||||| || |||||||| || || || || || || | ||| ||||||| ||| ||||||||||||||||| ||||| || ||||||| |
|
|
| T |
66665 |
tcatactgaactgaaattgacaaagcatgatcctctctatccactacaacagactcaaacaggttttcagacaaatccacatcaatcaaaaccctagcaa |
66566 |
T |
|
| Q |
101 |
aagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgtttttcccagtattctgg |
200 |
Q |
| |
|
|| || |||||| | |||||||||| |||||||||||| ||||| || |||| |||||||||||||| |||| ||| ||| | |||| ||||| | |
|
|
| T |
66565 |
aaaaactaaatcgcttttgttgtgtagattcatcaatggacaaaggagtacccaggcctgaagctatttctaacagagtttgtatcccccaatattcaag |
66466 |
T |
|
| Q |
201 |
aggtacgttca-gaaatcttatccagatttgtgcatgagtttgtaattgagcttgaggtgcaaaatcctttgaccaacggtaaaagcgcatcaaccaagg |
299 |
Q |
| |
|
||| | || | ||||| || ||||||||| ||||||||||| ||||||| ||||||||||| ||||| | ||| | | || ||||||| | ||| |
|
|
| T |
66465 |
aggcagattaatgaaat-gtacccagatttgagcatgagtttgagattgagcatgaggtgcaaagtccttagtccattgtgagaaccgcatcagaccagg |
66367 |
T |
|
| Q |
300 |
cttgagattaatggttccaaaggcccaaattcgacgcatgtcttccactgaattgaaattgagctcgaagaaaccctttccaagcggaatcaaattccaa |
399 |
Q |
| |
|
||||||||| | || |||| ||||| |||| ||||| ||||| | ||| | ||||||| || ||||| || || || |||||||||||| ||||| |
|
|
| T |
66366 |
cttgagattgactgtaccaatagcccagattcttcgcatatcttcaattgaggttaaattgaattcaaagaatcctttaccgagcggaatcaaactccaa |
66267 |
T |
|
| Q |
400 |
ttttgcaattgaggccactgatt |
422 |
Q |
| |
|
|||||||| || |||||| |||| |
|
|
| T |
66266 |
ttttgcaagtgtggccacagatt |
66244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 3076 - 2808
Alignment:
| Q |
1 |
tcatattgaattgaaatggataaagcatggtcttccctttctaccaccatagattcaaacaagttctcagacaaatccacatctatcaagactctagcaa |
100 |
Q |
| |
|
||||| |||| |||||| || |||||||| || || || || || || | ||| ||||||| ||| |||||||| |||||||| ||||| || ||||||| |
|
|
| T |
3076 |
tcatactgaactgaaattgacaaagcatgatcctctctatccactacaacagactcaaacaggttttcagacaagtccacatcaatcaaaaccctagcaa |
2977 |
T |
|
| Q |
101 |
aagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgtttttcccagtattctgg |
200 |
Q |
| |
|
|| ||||||||| | |||||||||| |||||||||||| ||||| || |||| |||||||||||||| |||| ||| ||| | |||| ||||| | |
|
|
| T |
2976 |
aaaaaccaaatcgcttttgttgtgtagattcatcaatggacaaaggagtacccaggcctgaagctatttctaacagagtttgtatcccccaatattcaag |
2877 |
T |
|
| Q |
201 |
aggtacgttcagaaatcttatccagatttgtgcatgagtttgtaattgagcttgaggtgcaaaatcctt |
269 |
Q |
| |
|
||| | || | || | || ||||||||| ||||||||||| ||||||| |||||||||| ||||| |
|
|
| T |
2876 |
aggcagattaatgaaacgtacccagatttgagcatgagtttgagattgagcaagaggtgcaaagtcctt |
2808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 44771761 - 44771697
Alignment:
| Q |
353 |
tgaaattgagctcgaagaaaccctttccaagcggaatcaaattccaattttgcaattgaggccac |
417 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | | |||||||||||||| | ||||||| |
|
|
| T |
44771761 |
tgaaattgaactcgaagaaaccctttccaagcggagtgaggttccaattttgcaaattaggccac |
44771697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 24979054 - 24979109
Alignment:
| Q |
112 |
cgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctat |
167 |
Q |
| |
|
||||||||||| || ||||||||||||| || ||| || ||||||||||||||||| |
|
|
| T |
24979054 |
cgtctatgttgagttgcttcatcaatggttagaggggttcccaaacctgaagctat |
24979109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 6907174 - 6907280
Alignment:
| Q |
163 |
gctatttcaaacaaagtctgtttttcccagtattctggaggtacgttcagaaatcttatccagatttgtgcatgagtttgtaattgagcttgaggtgcaa |
262 |
Q |
| |
|
||||||||||| || || ||||| ||||| |||||| |||||| |||| ||||| | ||| || |||||||| |||||| |||||||||||| |||| |
|
|
| T |
6907174 |
gctatttcaaataatgtttgtttctcccaatattcttgaggtaaattcaagaatctgacccatatctgtgcatgggtttgtgtttgagcttgaggagcaa |
6907273 |
T |
|
| Q |
263 |
aatcctt |
269 |
Q |
| |
|
| ||||| |
|
|
| T |
6907274 |
agtcctt |
6907280 |
T |
|
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