View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_22 (Length: 436)
Name: NF17761_low_22
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 85 - 416
Target Start/End: Original strand, 25926717 - 25927048
Alignment:
| Q |
85 |
caagcccaaccgcttttctcacgcgccttctgttttactcgttttacctagtttacattttataatacaaagcgattttataatgttcggattataaaat |
184 |
Q |
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| T |
25926717 |
caagcccaaccgcttttctcgcacgccttctattttacttgttttacctagtttacattttataatacgaagcgattttatgttgttcggattataaaat |
25926816 |
T |
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| Q |
185 |
ttaaaatgtatttaatatggggtctaaagcgtatggtctatagattttatttgttttatagagataacataagttaaatgtgacaacatgatttaaaatt |
284 |
Q |
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| T |
25926817 |
ttaaaatgtatttaatttggggtctaaagcgtacggtgtatagattttatttgttttataaagataacataaattaaatgtgacaacatgatttaaaatt |
25926916 |
T |
|
| Q |
285 |
gacaacaaaatttattaatttaactgaatttcataattcatttacattaacatcacactatatatgtagtaaaaacatttggaaactaaagataaatttg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25926917 |
gacaacaaaatttattaatttaactgaatttcataattcatctatattagcatcacactatatatgtagtaaaaacatttggaaactaaagataaatttg |
25927016 |
T |
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| Q |
385 |
cattacaagaagattgagggagaaggtttttc |
416 |
Q |
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| T |
25927017 |
cattacaagaagatcgagggagaaggtttttc |
25927048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 25926671 - 25926727
Alignment:
| Q |
16 |
aagaatgtaatggaacttcttagaacaatcaagattctcgcaagcccaagctcaacc |
72 |
Q |
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| T |
25926671 |
aagaatgtaatggaacttcttagaacaatcaagattctcgcaagcccaagcccaacc |
25926727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 5746977 - 5747045
Alignment:
| Q |
275 |
atttaaaattgacaacaaaatttattaatttaactgaatttcataattcatttacattaacatcacact |
343 |
Q |
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| T |
5746977 |
atttaaaatagacaacaaaatttattaattgaacacaatttcataatatatttatattaacatcacact |
5747045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 304
Target Start/End: Original strand, 43328270 - 43328299
Alignment:
| Q |
275 |
atttaaaattgacaacaaaatttattaatt |
304 |
Q |
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| T |
43328270 |
atttaaaattgacaacaaaatttattaatt |
43328299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 52975251 - 52975312
Alignment:
| Q |
270 |
acatgatttaaaattgacaacaaaatttattaatttaactgaatttcataattcatttacat |
331 |
Q |
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|||| |||||||||||||||||||||| || |||| || ||||||||||| ||||||||| |
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| T |
52975251 |
acataatttaaaattgacaacaaaattgatcaattgaatacaatttcataatacatttacat |
52975312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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