View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17761_low_24 (Length: 421)
Name: NF17761_low_24
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 37790578 - 37790712
Alignment:
| Q |
18 |
acatagatccaacatcatccctattgatatagcttgagtcgatgacttggctgaaccaattgttagataataagattgagcttatactattggcctcttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37790578 |
acatagatccaacatcatccctattgatatagcttgagtcgatgacttggctgaaccaattgttagataataagattgagcttatgctattggcctcttt |
37790677 |
T |
|
| Q |
118 |
atgtttgtaagttagtagatttgtaaagaactctat |
153 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37790678 |
atgtttgtaagttagtagattt-taaagaactctat |
37790712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 37790716 - 37790833
Alignment:
| Q |
120 |
gtttgtaagttagtagatttgtaaagaactctattggttcttttggataatttgggaagtcaagttattgccaataa---tgtgttcgtgaaaaatcctc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
37790716 |
gtttgtaagttagtagatttgtaaagaactctattggttcttttggataatttgggaagtcaagttattgccaataatattgtgtttgtgaaaaatcctc |
37790815 |
T |
|
| Q |
217 |
gttgaagacatatttgaa |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37790816 |
gttgaagacatatttgaa |
37790833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 37790970 - 37791006
Alignment:
| Q |
373 |
ctcgcattattgattccccgcttctgtctttgatgat |
409 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
37790970 |
ctcgcaatattgattcctcgcttctgtctttgatgat |
37791006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University