View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_27 (Length: 413)
Name: NF17761_low_27
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 30711420 - 30711807
Alignment:
| Q |
17 |
atcatgtttataaggaggttttcaaaaattaacttaacaaaaggtgggtggccattgtatgaattaccattgtttgacaaaagcaatggtgaaaaatgat |
116 |
Q |
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| T |
30711420 |
atcatgtttataaggaggttttcaaaaattaacttaacaaaaggtgggtggccattgtatgaattaccattgtttgacaaaagcaacagtgaaaaatgat |
30711519 |
T |
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| Q |
117 |
catgaaatattgcaaagcaaacatgaaacaacattgtgtatgttatggagatatataactcaagttgctccttggaaaaaccgaaaagaatgcaattgtg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30711520 |
catgaaatattgcaaagcaaacatgaaacaacattgtgtatgttatggagatatataactcaagttgctccttggaaaaactgaaaagaatgcaattgtg |
30711619 |
T |
|
| Q |
217 |
cttagatttaaataagcatgaacaatcaaagcatacattcacagagataattcacaatgatatgaagaattttttgtaccaatatcattgaccgagttac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30711620 |
cttagatttaaataagcatgaacaatcaaagcatacattcacagagataattcacaatgatatgaagaattttttgtaccaatatcattgaccgagttac |
30711719 |
T |
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| Q |
317 |
aaagcatgactttagtgtcctagaggaaacattgaaaggtgggatcaatttttctattctaggtcttgagtttctgatattcttggac |
404 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| |
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| T |
30711720 |
aaagcttgactttagtgtcctagaggaaacattgaaaggtgggatcaattttactattctaggtcttgagtttctgatttacttggac |
30711807 |
T |
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