View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17761_low_29 (Length: 404)
Name: NF17761_low_29
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 1036069 - 1036436
Alignment:
| Q |
16 |
cagcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacggatcgcgttatgcctgtacaatttgggaaagacaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1036069 |
cagcaaatgggttaggtaaccaaataattaccgcggcttcatcatttctttacgcgatgctaacggatcgcgttat----------tttgggaaagacaa |
1036158 |
T |
|
| Q |
116 |
agaaggtttattttgtgaaccattttttaattcaacttggttgttaccaaacaactctcctttttgggatgcaaacgatgttaaaacatatcaaagcaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036159 |
agaaggtttattttgtgaaccatttttgaattcaacttggttgttaccaaacgactctcctttttgggatgcaaacgatgttaaaacatatcaaagcaca |
1036258 |
T |
|
| Q |
216 |
attgagatggagattatgtctaatgcattgaatgaagatttaccatcaacaatgtatgtggatctaagatatagtggtacatctgatgagagattttttc |
315 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036259 |
attgagatggagattatgtctaatacattgaatgaagatttaccatcaacaatgtatgtggatctaagatatagtggtacatctgatgagagattttttc |
1036358 |
T |
|
| Q |
316 |
actgtgaccacagtcaatttcttctcagtaaaattcctctgttgtttttcgatgcaggtgagtattttataccttcat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036359 |
actgtgaccacagtcaatttcttctcagtaaaattcctctgttgtttttcgatgcaggtgagtattttataccttcat |
1036436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 1011102 - 1011207
Alignment:
| Q |
106 |
ggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttggttgttaccaaacaactctcctttttgggatgcaaacgatgttaaaacata |
205 |
Q |
| |
|
||||||||||| ||||| |||||||||| || ||||| ||||||||||||||||||||| | || |||||||||||| ||| ||| ||||| ||||||| |
|
|
| T |
1011102 |
ggaaagacaaacaaggtatattttgtgagccttttttgaattcaacttggttgttaccagaaaagtctcctttttggaatgaaaatcatgttgaaacata |
1011201 |
T |
|
| Q |
206 |
tcaaag |
211 |
Q |
| |
|
|||||| |
|
|
| T |
1011202 |
tcaaag |
1011207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 6938766 - 6938399
Alignment:
| Q |
18 |
gcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacggatcgcgttatgcctgtacaatttgggaaagacaaag |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| || ||| | ||||||| || ||||||| ||||| ||||| |||||||||| |
|
|
| T |
6938766 |
gcaaatggtttaggtaaccaaataattagcatggcttcatcatttctatatgcgctcctaacgggacgtgttatgctcgtacagtttggaaaagacaaag |
6938667 |
T |
|
| Q |
118 |
aaggtttattttgtgaaccattttttaattcaacttggttgttaccaaacaactctcctttttgggatgcaaacgatgttaaaacatatcaaagcacaat |
217 |
Q |
| |
|
||||||||||||| ||||||||| | ||||| ||||||||||||||| | || |||||||||||| ||||| | | ||| ||||||||||||||||||| |
|
|
| T |
6938666 |
aaggtttattttgcgaaccatttctgaattcgacttggttgttaccagaaaaatctcctttttggaatgcagaaaaagttcaaacatatcaaagcacaat |
6938567 |
T |
|
| Q |
218 |
tgagatggagattatgtctaatgcattgaatgaagatttaccatcaacaatgtatgtggatctaagatatagtggtacatctgatgagagattttttcac |
317 |
Q |
| |
|
| |||||| | | ||||| |||| ||||||||||| |||||| || || ||||| || || |||||||| |||||| || ||||||||||||||| |
|
|
| T |
6938566 |
taagatgg---gtggggctaatacattaaatgaagattttccatcagcattgcatgtgaatttaggatatagtcctacatcagaagagagattttttcac |
6938470 |
T |
|
| Q |
318 |
tgtgaccacagtcaatttcttctcagtaaaattcctctgttgtttttcgatgcaggtgagtattttatacc |
388 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |||||||| || |||||| |||||||| |||| |
|
|
| T |
6938469 |
tgtgaccacaaccaatttcttctcagtaatattcctcttttgtttttggaagcaggtcagtattttgtacc |
6938399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University